[ { "id": "P0DH87-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "P0DH87-1", "length": 546, "uniprot_id": "PSRK_ARATH", "protein_name": "Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "refseq_ac": "", "refseq_name": "", "gene_name": "PSEUDOSRKA", "gene_names_uniprotkb": "PSEUDOSRKA; T6K22.100", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KISNANLVILDNSDTHVWST", "down_seq": "LTGAVRSSVVAELLDNGNFV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn120", "evidence": [ { "id": "P0DH87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DH87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DH87-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "P0DH87-1", "length": 546, "uniprot_id": "PSRK_ARATH", "protein_name": "Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "refseq_ac": "", "refseq_name": "", "gene_name": "PSEUDOSRKA", "gene_names_uniprotkb": "PSEUDOSRKA; T6K22.100", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSVVAELLDNGNFVLRGSKI", "down_seq": "ESDEFLWQSFDFPTDTLLPQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn147", "evidence": [ { "id": "P0DH87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DH87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DH87-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "P0DH87-1", "length": 546, "uniprot_id": "PSRK_ARATH", "protein_name": "Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "refseq_ac": "", "refseq_name": "", "gene_name": "PSEUDOSRKA", "gene_names_uniprotkb": "PSEUDOSRKA; T6K22.100", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WDGLRFSGILEMQQWDDIIY", "down_seq": "FTENREEVAYTFRVTDHNSY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn243", "evidence": [ { "id": "P0DH87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DH87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DH87-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "P0DH87-1", "length": 546, "uniprot_id": "PSRK_ARATH", "protein_name": "Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "refseq_ac": "", "refseq_name": "", "gene_name": "PSEUDOSRKA", "gene_names_uniprotkb": "PSEUDOSRKA; T6K22.100", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AIVDKRIGLKECEEKCKTHC", "down_seq": "CTAYANSDIRNGGSGCIIWI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn387", "evidence": [ { "id": "P0DH87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DH87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DH87-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "P0DH87-1", "length": 546, "uniprot_id": "PSRK_ARATH", "protein_name": "Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK", "refseq_ac": "", "refseq_name": "", "gene_name": "PSEUDOSRKA", "gene_names_uniprotkb": "PSEUDOSRKA; T6K22.100", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DH87", "url": "https://www.uniprot.org/uniprotkb/P0DH87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PDLSISVNTLSATESLTISS", "down_seq": "KTIVSPGGVFELGFFRILGD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn46", "evidence": [ { "id": "P0DH87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DH87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DH99-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ATTPKYSKARYDEIIKEVSS", "down_seq": "LKKVGYNPDKIPFVPISGFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr177" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKEKFHINIVVIGHVDSGKS", "down_seq": "TTGHLIYKLGGIDKRVIERF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr22" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P0DH99-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NIVVIGHVDSGKSTTTGHLI", "down_seq": "KLGGIDKRVIERFEKEAAEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P0DH99-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.393.393", "start_pos": 393, "end_pos": 393, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KEIEKEPKFLKNGDAGMVKM", "down_seq": "PTKPMVVETFSEYPPLGRFA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr393" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P0DH99-1.395.395", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.395.395", "start_pos": 395, "end_pos": 395, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IEKEPKFLKNGDAGMVKMTP", "down_seq": "KPMVVETFSEYPPLGRFAVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr395" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P0DH99-1.393.393", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.420.420", "start_pos": 420, "end_pos": 420, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VETFSEYPPLGRFAVRDMRQ", "down_seq": "VAVGVIKSVDKKDPTGAKVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr420" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P0DH99-1.428.428", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P0DH99-1.440.440", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLGRFAVRDMRQTVAVGVIK", "down_seq": "VDKKDPTGAKVTKAAVKKGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser428" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P0DH99-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P0DH99-1.440.440", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DH99-1.440.440", "start_pos": 440, "end_pos": 440, "uniprot_canonical_ac": "P0DH99-1", "length": 449, "uniprot_id": "EF1A1_ARATH", "protein_name": "Elongation factor 1-alpha 1", "refseq_ac": "", "refseq_name": "", "gene_name": "A1", "gene_names_uniprotkb": "A1; T6D22.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DH99", "url": "https://www.uniprot.org/uniprotkb/P0DH99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TVAVGVIKSVDKKDPTGAKV", "down_seq": "KAAVKKGAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DH99", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DH99" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr440" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "395", "end_pos": "395" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "440", "end_pos": "440" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P0DH99-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P0DH99-1.428.428", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DKC3-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "P0DKC3-1", "length": 362, "uniprot_id": "PGP1A_ARATH", "protein_name": "Phosphoglycolate phosphatase 1A, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "PGLP1A", "gene_names_uniprotkb": "PGLP1A; F24C7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLSRSVASAV", "down_seq": "PVSSSSLLPNSKPIFCLKTL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr11", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DKC3-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "P0DKC3-1", "length": 362, "uniprot_id": "PGP1A_ARATH", "protein_name": "Phosphoglycolate phosphatase 1A, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "PGLP1A", "gene_names_uniprotkb": "PGLP1A; F24C7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.", "journal": "Plant physiology", "date": "2007-07", "authors": "Schwarte Sandra, Bauwe Hermann", "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "17478634", "url": "https://glygen.org/publication/PubMed/17478634" } ] } ], "crossref": [ { "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17478634", "url": "https://glygen.org/publication/PubMed/17478634", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LFIATNRDAVTHLTDAQEWA", "down_seq": "GGSMVGALVGSTQREPLVVG", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "60% decreased catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" }, { "database": "PubMed", "id": "17478634", "url": "https://glygen.org/publication/PubMed/17478634" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DKC3-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "P0DKC3-1", "length": 362, "uniprot_id": "PGP1A_ARATH", "protein_name": "Phosphoglycolate phosphatase 1A, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "PGLP1A", "gene_names_uniprotkb": "PGLP1A; F24C7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CMVGDRLDTDILFGQNGGCK", "down_seq": "LLVLSGVTSISMLESPENKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "site_lbl": "Thr322" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DKC3-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "P0DKC3-1", "length": 362, "uniprot_id": "PGP1A_ARATH", "protein_name": "Phosphoglycolate phosphatase 1A, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "PGLP1A", "gene_names_uniprotkb": "PGLP1A; F24C7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" }, { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESPENKIQPDFYTSKISDFL", "down_seq": "PKAATV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser356" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DKC3-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "P0DKC3-1", "length": 362, "uniprot_id": "PGP1A_ARATH", "protein_name": "Phosphoglycolate phosphatase 1A, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "PGLP1A", "gene_names_uniprotkb": "PGLP1A; F24C7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKC3", "url": "https://www.uniprot.org/uniprotkb/P0DKC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLPNSKPIFCLKTLSGYRSS", "down_seq": "FCGGCIRKINHKPLRMTSSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0DKC3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0DKC3" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0DKL4-1.1069.1069", "start_pos": 1069, "end_pos": 1069, "uniprot_canonical_ac": "P0DKL4-1", "length": 1214, "uniprot_id": "S130A_ARATH", "protein_name": "Spliceosome-associated protein 130 A", "refseq_ac": "NP_001319757", "refseq_name": "Cleavage and polyadenylation specificity factor (CPSF) A subunit protein", "gene_name": "SAP130A", "gene_names_uniprotkb": "SAP130A; T26I12.80", "gene_names_refseq": "Arabidopsis thaliana spliceosome-associated protein 130 a; AtSAP130a; SAP130a; spliceosome-associated protein 130 a", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKL4", "url": "https://www.uniprot.org/uniprotkb/P0DKL4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GNVYFVRLPQDLSEEIEEDP", "down_seq": "GGKIKWEQGKLNGAPNKVDE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1069", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1069", "end_pos": "1069" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DKL6-1.1069.1069", "start_pos": 1069, "end_pos": 1069, "uniprot_canonical_ac": "P0DKL6-1", "length": 1214, "uniprot_id": "S130B_ARATH", "protein_name": "Spliceosome-associated protein 130 B", "refseq_ac": "NP_567016", "refseq_name": "Cleavage and polyadenylation specificity factor (CPSF) A subunit protein", "gene_name": "SAP130B", "gene_names_uniprotkb": "SAP130B; SF3b130; T26I12.100", "gene_names_refseq": "Arabidopsis thaliana spliceosome-associated protein 130 b; AtSAP130b; SAP130b; T26I12.100; spliceosome-associated protein 130 b", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DKL6", "url": "https://www.uniprot.org/uniprotkb/P0DKL6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GNVYFVRLPQDLSEEIEEDP", "down_seq": "GGKIKWEQGKLNGAPNKVDE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1069", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1069", "end_pos": "1069" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DN96-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "P0DN96-1", "length": 76, "uniprot_id": "PCEP7_ARATH", "protein_name": "Precursor of CEP7", "refseq_ac": "", "refseq_name": "", "gene_name": "CEP7", "gene_names_uniprotkb": "CEP7; MUD21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DN96", "url": "https://www.uniprot.org/uniprotkb/P0DN96" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DN96", "url": "https://www.uniprot.org/uniprotkb/P0DN96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VLIQESHIVEGRPLKSSRIS", "down_seq": "VSKKFAAGNSNLSSKLTTED", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn37", "evidence": [ { "id": "P0DN96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DN96#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P0DN96-1.48.48", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DN96-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "P0DN96-1", "length": 76, "uniprot_id": "PCEP7_ARATH", "protein_name": "Precursor of CEP7", "refseq_ac": "", "refseq_name": "", "gene_name": "CEP7", "gene_names_uniprotkb": "CEP7; MUD21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DN96", "url": "https://www.uniprot.org/uniprotkb/P0DN96" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DN96", "url": "https://www.uniprot.org/uniprotkb/P0DN96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RPLKSSRISNVSKKFAAGNS", "down_seq": "LSSKLTTEDHSLDAFRPTNP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn48", "evidence": [ { "id": "P0DN96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DN96#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P0DN96-1.37.37", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0DN97-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "P0DN97-1", "length": 87, "uniprot_id": "PCEP8_ARATH", "protein_name": "Precursor of CEP8", "refseq_ac": "", "refseq_name": "", "gene_name": "CEP8", "gene_names_uniprotkb": "CEP8; MUD21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0DN97", "url": "https://www.uniprot.org/uniprotkb/P0DN97" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0DN97", "url": "https://www.uniprot.org/uniprotkb/P0DN97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SHEIIPTEARHLRTHRKSIK", "down_seq": "STLTVHEGAGGLRTGGGSVK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn41", "evidence": [ { "id": "P0DN97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0DN97#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P10796-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "P10796-1", "length": 181, "uniprot_id": "RBS1B_ARATH", "protein_name": "Ribulose bisphosphate carboxylase small subunit 1B, chloroplastic", "refseq_ac": "NP_001318696", "refseq_name": "Ribulose bisphosphate carboxylase (small chain) family protein", "gene_name": "RBCS-1B", "gene_names_uniprotkb": "RBCS-1B; ATS1B; MXI10.15", "gene_names_refseq": "MXI10.15; MXI10_15; RBCS1B; Rubisco small subunit 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P10796", "url": "https://www.uniprot.org/uniprotkb/P10796" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WIPCVEFELEHGFVYREHGN", "down_seq": "PGYYDGRYWTMWKLPLFGCT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr113" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P10796-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "P10796-1", "length": 181, "uniprot_id": "RBS1B_ARATH", "protein_name": "Ribulose bisphosphate carboxylase small subunit 1B, chloroplastic", "refseq_ac": "NP_001318696", "refseq_name": "Ribulose bisphosphate carboxylase (small chain) family protein", "gene_name": "RBCS-1B", "gene_names_uniprotkb": "RBCS-1B; ATS1B; MXI10.15", "gene_names_refseq": "MXI10.15; MXI10_15; RBCS1B; Rubisco small subunit 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P10796", "url": "https://www.uniprot.org/uniprotkb/P10796" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEECKKEYPGAFIRIIGFDN", "down_seq": "RQVQCISFIAYKPPSFTDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P10796-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "P10796-1", "length": 181, "uniprot_id": "RBS1B_ARATH", "protein_name": "Ribulose bisphosphate carboxylase small subunit 1B, chloroplastic", "refseq_ac": "NP_001318696", "refseq_name": "Ribulose bisphosphate carboxylase (small chain) family protein", "gene_name": "RBCS-1B", "gene_names_uniprotkb": "RBCS-1B; ATS1B; MXI10.15", "gene_names_refseq": "MXI10.15; MXI10_15; RBCS1B; Rubisco small subunit 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P10796", "url": "https://www.uniprot.org/uniprotkb/P10796" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTSPAQATMVAPFTGLKSSA", "down_seq": "FPVTRKANNDITSITSNGGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10796", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10796" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P10797-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "P10797-1", "length": 181, "uniprot_id": "RBS2B_ARATH", "protein_name": "Ribulose bisphosphate carboxylase small subunit 2B, chloroplastic", "refseq_ac": "NP_198658", "refseq_name": "Ribulose bisphosphate carboxylase (small chain) family protein", "gene_name": "RBCS-2B", "gene_names_uniprotkb": "RBCS-2B; ATS2B; MXI10.14", "gene_names_refseq": "MXI10.14; MXI10_14; RBCS2B; Rubisco small subunit 2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P10797", "url": "https://www.uniprot.org/uniprotkb/P10797" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEECKKEYPGAFIRIIGFDN", "down_seq": "RQVQCISFIAYKPPSFTEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P10797-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "P10797-1", "length": 181, "uniprot_id": "RBS2B_ARATH", "protein_name": "Ribulose bisphosphate carboxylase small subunit 2B, chloroplastic", "refseq_ac": "NP_198658", "refseq_name": "Ribulose bisphosphate carboxylase (small chain) family protein", "gene_name": "RBCS-2B", "gene_names_uniprotkb": "RBCS-2B; ATS2B; MXI10.14", "gene_names_refseq": "MXI10.14; MXI10_14; RBCS2B; Rubisco small subunit 2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P10797", "url": "https://www.uniprot.org/uniprotkb/P10797" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTSPAQATMVAPFTGLKSSA", "down_seq": "FPVTRKANNDITSITSNGGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10797", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10797" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14671-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "P14671-1", "length": 470, "uniprot_id": "TRPB1_ARATH", "protein_name": "Tryptophan synthase beta chain 1, chloroplastic", "refseq_ac": "NP_200292", "refseq_name": "tryptophan synthase beta-subunit 1", "gene_name": "TSB1", "gene_names_uniprotkb": "TSB1; MBG8.7", "gene_names_refseq": "ATTSB1; MBG8.7; MBG8_7; TRP2; TRPB; TRYPTOPHAN BIOSYNTHESIS 2; TRYPTOPHAN BIOSYNTHESIS B; TSB1; tryptophan synthase beta-subunit 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14671", "url": "https://www.uniprot.org/uniprotkb/P14671" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P14671", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14671" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P14671", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14671", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDPPVLMAAGSDPALWQRPD", "down_seq": "FGRFGKFGGKYVPETLMHAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14671", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14671" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23586-1.378.378", "start_pos": 378, "end_pos": 378, "uniprot_canonical_ac": "P23586-1", "length": 522, "uniprot_id": "STP1_ARATH", "protein_name": "Sugar transport protein 1", "refseq_ac": "NP_172592", "refseq_name": "sugar transporter 1", "gene_name": "STP1", "gene_names_uniprotkb": "STP1; T28P6.9", "gene_names_refseq": "ATSTP1; STP1; SUGAR TRANSPORTER 1; T28P6.9; T28P6_9; sugar transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLICQAVVAACIGAKFGVDG", "down_seq": "PGELPKWYAIVVVTFICIYV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr378", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "378", "end_pos": "378" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "252", "end_pos": "252" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "519", "end_pos": "519" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23586-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "P23586-1", "length": 522, "uniprot_id": "STP1_ARATH", "protein_name": "Sugar transport protein 1", "refseq_ac": "NP_172592", "refseq_name": "sugar transporter 1", "gene_name": "STP1", "gene_names_uniprotkb": "STP1; T28P6.9", "gene_names_refseq": "ATSTP1; STP1; SUGAR TRANSPORTER 1; T28P6.9; T28P6_9; sugar transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" }, { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" }, { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" }, { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Novel subsets of the Arabidopsis plasmalemma phosphoproteome identify phosphorylation sites in secondary active transporters.", "journal": "Biochemical and biophysical research communications", "date": "2007-11-16", "authors": "Hem Sonia, Rofidal Val\u00e9rie, Sommerer Nicolas, Rossignol Michel", "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" }, { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "17869214", "url": "https://glygen.org/publication/PubMed/17869214" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana.", "journal": "Proteome science", "date": "2009-11-10", "authors": "Hsu Jue-Liang, Wang Lan-Yu, Wang Shu-Ying, Lin Ching-Huang, Ho Kuo-Chieh, Shi Fong-Ku, Chang Ing-Feng", "evidence": [ { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17869214", "url": "https://glygen.org/publication/PubMed/17869214", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGQHEEAKTKLRRIRGVDDV", "down_seq": "QEFDDLVAASKESQSIEHPW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "17869214", "url": "https://glygen.org/publication/PubMed/17869214" }, { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser252" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "378", "end_pos": "378" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "252", "end_pos": "252" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "519", "end_pos": "519" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23586-1.514.514", "start_pos": 514, "end_pos": 514, "uniprot_canonical_ac": "P23586-1", "length": 522, "uniprot_id": "STP1_ARATH", "protein_name": "Sugar transport protein 1", "refseq_ac": "NP_172592", "refseq_name": "sugar transporter 1", "gene_name": "STP1", "gene_names_uniprotkb": "STP1; T28P6.9", "gene_names_refseq": "ATSTP1; STP1; SUGAR TRANSPORTER 1; T28P6.9; T28P6_9; sugar transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YWSRFVEDGEYGNALEMGKN", "down_seq": "NQAGTKHV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "site_lbl": "Ser514" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "378", "end_pos": "378" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "252", "end_pos": "252" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "519", "end_pos": "519" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P23586-1.519.519", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23586-1.519.519", "start_pos": 519, "end_pos": 519, "uniprot_canonical_ac": "P23586-1", "length": 522, "uniprot_id": "STP1_ARATH", "protein_name": "Sugar transport protein 1", "refseq_ac": "NP_172592", "refseq_name": "sugar transporter 1", "gene_name": "STP1", "gene_names_uniprotkb": "STP1; T28P6.9", "gene_names_refseq": "ATSTP1; STP1; SUGAR TRANSPORTER 1; T28P6.9; T28P6_9; sugar transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P23586", "url": "https://www.uniprot.org/uniprotkb/P23586" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEDGEYGNALEMGKNSNQAG", "down_seq": "KHV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P23586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23586" } ], "site_lbl": "Thr519" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "378", "end_pos": "378" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "252", "end_pos": "252" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "519", "end_pos": "519" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P23586-1.514.514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P25701-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "P25701-1", "length": 136, "uniprot_id": "ACP2_ARATH", "protein_name": "Acyl carrier protein 2, chloroplastic", "refseq_ac": "NP_175860", "refseq_name": "acyl carrier protein 2", "gene_name": "ACP2", "gene_names_uniprotkb": "ACP2; A1; ACL1.2; T22H22.3", "gene_names_refseq": "ACP2; T22H22.3; T22H22_3; acyl carrier protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25701", "url": "https://www.uniprot.org/uniprotkb/P25701" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P25701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25701" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] } ], "crossref": [ { "id": "P25701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25701", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VDKVCAVVRKQLSLKEADEI", "down_seq": "AATKFAALGADSLDTVEIVM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25701" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ], "site_lbl": "Thr79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25873-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "P25873-1", "length": 277, "uniprot_id": "RK15_ARATH", "protein_name": "Large ribosomal subunit protein uL15c", "refseq_ac": "NP_189221", "refseq_name": "ribosomal protein L15", "gene_name": "RPL15", "gene_names_uniprotkb": "RPL15; MPE11.32; MPE11.9; MPE11_7", "gene_names_refseq": "MPE11.32; RIBOSOMAL PROTEIN CL15; RPL15; ribosomal protein L15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25873", "url": "https://www.uniprot.org/uniprotkb/P25873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25873" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P25873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "INPSGRERKLPLKILGTGEL", "down_seq": "MKLTFKARAFSTQAKEKLEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25873" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "276", "end_pos": "276" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25873-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "P25873-1", "length": 277, "uniprot_id": "RK15_ARATH", "protein_name": "Large ribosomal subunit protein uL15c", "refseq_ac": "NP_189221", "refseq_name": "ribosomal protein L15", "gene_name": "RPL15", "gene_names_uniprotkb": "RPL15; MPE11.32; MPE11.9; MPE11_7", "gene_names_refseq": "MPE11.32; RIBOSOMAL PROTEIN CL15; RPL15; ribosomal protein L15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25873", "url": "https://www.uniprot.org/uniprotkb/P25873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P25873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25873" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P25873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EYFAKKRAAAAEAATSEPAA", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25873" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser276" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "276", "end_pos": "276" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28297-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "P28297-1", "length": 576, "uniprot_id": "ACEA_ARATH", "protein_name": "Isocitrate lyase", "refseq_ac": "NP_188809", "refseq_name": "isocitrate lyase", "gene_name": "ICL", "gene_names_uniprotkb": "ICL; MSD21.3", "gene_names_refseq": "ICL; isocitrate lyase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P28297", "url": "https://www.uniprot.org/uniprotkb/P28297" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P28297", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28297", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEHLFFAQQYHDRKQREARM", "down_seq": "MSREERTKTPFVDYLKPIIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P28297", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28297" } ], "site_lbl": "Ser154" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "156", "end_pos": "156" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P28297-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P28297-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "P28297-1", "length": 576, "uniprot_id": "ACEA_ARATH", "protein_name": "Isocitrate lyase", "refseq_ac": "NP_188809", "refseq_name": "isocitrate lyase", "gene_name": "ICL", "gene_names_uniprotkb": "ICL; MSD21.3", "gene_names_refseq": "ICL; isocitrate lyase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P28297", "url": "https://www.uniprot.org/uniprotkb/P28297" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P28297", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28297", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLFFAQQYHDRKQREARMSM", "down_seq": "REERTKTPFVDYLKPIIADG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P28297", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28297" } ], "site_lbl": "Ser156" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "156", "end_pos": "156" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P28297-1.154.154", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P29388-1.250.250", "start_pos": 250, "end_pos": 250, "uniprot_canonical_ac": "P29388-1", "length": 669, "uniprot_id": "NU5M_ARATH", "protein_name": "NADH-ubiquinone oxidoreductase chain 5", "refseq_ac": "", "refseq_name": "", "gene_name": "ND5", "gene_names_uniprotkb": "ND5; NAD5C; NAD5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29388", "url": "https://www.uniprot.org/uniprotkb/P29388" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VGKSAQIGLHTWLPDAMEGP", "down_seq": "PVSALIHAATMVTAGVFMIA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "250", "end_pos": "250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P29514-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "P29514-1", "length": 449, "uniprot_id": "TBB6_ARATH", "protein_name": "Tubulin beta-6 chain", "refseq_ac": "NP_196786", "refseq_name": "beta-6 tubulin", "gene_name": "TUBB6", "gene_names_uniprotkb": "TUBB6; MXC9.21; TUB6", "gene_names_refseq": "MXC9.21; MXC9_21; TUB6; beta-6 tubulin", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29514", "url": "https://www.uniprot.org/uniprotkb/P29514" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P29514", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29514", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "IGSKFWEVVCDEHGIDPTGR", "down_seq": "VGNSDLQLERVNVYYNEASC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29514", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29514" } ], "site_lbl": "Tyr36" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "36", "end_pos": "36" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P29514-1.40.40", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P29514-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "P29514-1", "length": 449, "uniprot_id": "TBB6_ARATH", "protein_name": "Tubulin beta-6 chain", "refseq_ac": "NP_196786", "refseq_name": "beta-6 tubulin", "gene_name": "TUBB6", "gene_names_uniprotkb": "TUBB6; MXC9.21; TUB6", "gene_names_refseq": "MXC9.21; MXC9_21; TUB6; beta-6 tubulin", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29514", "url": "https://www.uniprot.org/uniprotkb/P29514" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P29514", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29514", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FWEVVCDEHGIDPTGRYVGN", "down_seq": "DLQLERVNVYYNEASCGRYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29514", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29514" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "36", "end_pos": "36" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P29514-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P29525-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "P29525-1", "length": 173, "uniprot_id": "OLEO1_ARATH", "protein_name": "Oleosin 18.5 kDa", "refseq_ac": "", "refseq_name": "", "gene_name": "F13M23.280", "gene_names_uniprotkb": "F13M23.280", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29525", "url": "https://www.uniprot.org/uniprotkb/P29525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGRGSDYSKSRQIAKAATAV", "down_seq": "AGGSLLVLSSLTLVGTVIAL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr51", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P29525-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "P29525-1", "length": 173, "uniprot_id": "OLEO1_ARATH", "protein_name": "Oleosin 18.5 kDa", "refseq_ac": "", "refseq_name": "", "gene_name": "F13M23.280", "gene_names_uniprotkb": "F13M23.280", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29525", "url": "https://www.uniprot.org/uniprotkb/P29525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis serine/threonine/tyrosine protein kinase phosphorylates oil body proteins that regulate oil content in the seeds.", "journal": "Scientific reports", "date": "2018-01-18", "authors": "Ramachandiran Iyappan, Vijayakumar Anitha, Ramya Visvanathan, Rajasekharan Ram", "evidence": [ { "database": "iPTMnet", "id": "P29525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29525" } ], "reference": [ { "type": "PubMed", "id": "29348626", "url": "https://glygen.org/publication/PubMed/29348626" } ] } ], "crossref": [ { "id": "P29525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29525", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29348626", "url": "https://glygen.org/publication/PubMed/29348626", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KDRAQYYGQQHTGGEHDRDR", "down_seq": "RGGQHTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29525" }, { "database": "PubMed", "id": "29348626", "url": "https://glygen.org/publication/PubMed/29348626" } ], "site_lbl": "Thr166" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31169-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P31169-1", "length": 66, "uniprot_id": "KIN2_ARATH", "protein_name": "Stress-induced protein KIN2", "refseq_ac": "NP_197101", "refseq_name": "stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)", "gene_name": "KIN2", "gene_names_uniprotkb": "KIN2; COR6.6; F1N13_110", "gene_names_refseq": "AtCor6.6; COLD-RESPONSIVE 6.6; COR6.6; F1N13.110; F1N13_110; KIN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31169", "url": "https://www.uniprot.org/uniprotkb/P31169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SETNKNAFQAGQAAGKAEEK", "down_seq": "NVLLDKAKDAAAAAGASAQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31169-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "P31169-1", "length": 66, "uniprot_id": "KIN2_ARATH", "protein_name": "Stress-induced protein KIN2", "refseq_ac": "NP_197101", "refseq_name": "stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)", "gene_name": "KIN2", "gene_names_uniprotkb": "KIN2; COR6.6; F1N13_110", "gene_names_refseq": "AtCor6.6; COLD-RESPONSIVE 6.6; COR6.6; F1N13.110; F1N13_110; KIN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31169", "url": "https://www.uniprot.org/uniprotkb/P31169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDKAKDAAAAAGASAQQAGK", "down_seq": "ISDAAVGGVNFVKDKTGLNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P31169-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31169-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "P31169-1", "length": 66, "uniprot_id": "KIN2_ARATH", "protein_name": "Stress-induced protein KIN2", "refseq_ac": "NP_197101", "refseq_name": "stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)", "gene_name": "KIN2", "gene_names_uniprotkb": "KIN2; COR6.6; F1N13_110", "gene_names_refseq": "AtCor6.6; COLD-RESPONSIVE 6.6; COR6.6; F1N13.110; F1N13_110; KIN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31169", "url": "https://www.uniprot.org/uniprotkb/P31169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAKDAAAAAGASAQQAGKSI", "down_seq": "DAAVGGVNFVKDKTGLNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31169" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P31169-1.46.46", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTSLFNDSSLHLLSLQLPSA", "down_seq": "LTGSLPREIGEFSMLQSVFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn110", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P33543-1.90.90", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P33543-1.95.95", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LPPSIWNLCDKLVSFKIHGN", "down_seq": "LSGVLPEPALPNSTCGNLQV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn183", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "P33543-1.195.195", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VSFKIHGNNLSGVLPEPALP", "down_seq": "STCGNLQVLDLGGNKFSGEF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P33543-1.183.183", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SNVFEGLVPEGLGVLELESL", "down_seq": "LSHNNFSGMLPDFGESKFGA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn252", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P33543-1.257.257", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLVPEGLGVLELESLNLSHN", "down_seq": "FSGMLPDFGESKFGAESFEG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn257", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P33543-1.252.252", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LGKIKSSLQGNSESLLLSSW", "down_seq": "SSVPVCQWRGVKWVFSNGSP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn57", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WVFSNGSPLQCSDLSSPQWT", "down_seq": "TSLFNDSSLHLLSLQLPSAN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn90", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P33543-1.95.95", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P33543-1.110.110", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GSPLQCSDLSSPQWTNTSLF", "down_seq": "DSSLHLLSLQLPSANLTGSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "P33543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P33543-1.90.90", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P33543-1.110.110", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGAVVVASLLIGYLQNKKRK", "down_seq": "SIESEDDLEEGDEEDEIGEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P33543-1.331.331", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P33543-1.334.334", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.331.331", "start_pos": 331, "end_pos": 331, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAVVVASLLIGYLQNKKRKS", "down_seq": "IESEDDLEEGDEEDEIGEKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser331" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P33543-1.330.330", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P33543-1.334.334", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" }, { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVASLLIGYLQNKKRKSSIE", "down_seq": "EDDLEEGDEEDEIGEKEGGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser334" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P33543-1.330.330", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P33543-1.331.331", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKLVVFQGGENLTLDDVLNA", "down_seq": "GQVMEKTSYGTVYKAKLSDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "site_lbl": "Thr375" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VYKAKLSDGGNIALRLLREG", "down_seq": "CKDRSSCLPVIRQLGRIRHE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr407" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.454.454", "start_pos": 454, "end_pos": 454, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFYQGKRGEKLLIYDYLPNI", "down_seq": "LHDLLHESKPRKPALNWARR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "site_lbl": "Ser454" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33543-1.658.658", "start_pos": 658, "end_pos": 658, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRPSMEEVVKQLEENRPRNR", "down_seq": "ALYSPTETRSDAETPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser658" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P33543-1.662.662", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P33543-1.668.668", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.662.662", "start_pos": 662, "end_pos": 662, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEEVVKQLEENRPRNRSALY", "down_seq": "PTETRSDAETPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser662" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P33543-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P33543-1.668.668", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33543-1.668.668", "start_pos": 668, "end_pos": 668, "uniprot_canonical_ac": "P33543-1", "length": 674, "uniprot_id": "TMKL1_ARATH", "protein_name": "Putative kinase-like protein TMKL1", "refseq_ac": "NP_189109", "refseq_name": "transmembrane kinase-like 1", "gene_name": "TMKL1", "gene_names_uniprotkb": "TMKL1; MSD24.3", "gene_names_refseq": "TMKL1; transmembrane kinase-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P33543", "url": "https://www.uniprot.org/uniprotkb/P33543" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLEENRPRNRSALYSPTETR", "down_seq": "DAETPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P33543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P33543" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser668" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P33543-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P33543-1.662.662", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34047-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "P34047-1", "length": 270, "uniprot_id": "HIS5A_ARATH", "protein_name": "Imidazoleglycerol-phosphate dehydratase 1, chloroplastic", "refseq_ac": "NP_850624", "refseq_name": "imidazoleglycerol-phosphate dehydratase", "gene_name": "HISN5A", "gene_names_uniprotkb": "HISN5A; MCB17.17", "gene_names_refseq": "HISN5A; IGPD; IMIDAZOLEGLYCEROLPHOSPHATE DEHYDRATASE; imidazoleglycerol-phosphate dehydratase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34047", "url": "https://www.uniprot.org/uniprotkb/P34047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FKAFARALRQATETDPRRGG", "down_seq": "IPSSKGVLSRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr259" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34047-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "P34047-1", "length": 270, "uniprot_id": "HIS5A_ARATH", "protein_name": "Imidazoleglycerol-phosphate dehydratase 1, chloroplastic", "refseq_ac": "NP_850624", "refseq_name": "imidazoleglycerol-phosphate dehydratase", "gene_name": "HISN5A", "gene_names_uniprotkb": "HISN5A; MCB17.17", "gene_names_refseq": "HISN5A; IGPD; IMIDAZOLEGLYCEROLPHOSPHATE DEHYDRATASE; imidazoleglycerol-phosphate dehydratase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34047", "url": "https://www.uniprot.org/uniprotkb/P34047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLLRPKLGFIDLLPRRAMIV", "down_seq": "SPSSSLPRFLRMESQSQLRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P34047-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P34047-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "P34047-1", "length": 270, "uniprot_id": "HIS5A_ARATH", "protein_name": "Imidazoleglycerol-phosphate dehydratase 1, chloroplastic", "refseq_ac": "NP_850624", "refseq_name": "imidazoleglycerol-phosphate dehydratase", "gene_name": "HISN5A", "gene_names_uniprotkb": "HISN5A; MCB17.17", "gene_names_refseq": "HISN5A; IGPD; IMIDAZOLEGLYCEROLPHOSPHATE DEHYDRATASE; imidazoleglycerol-phosphate dehydratase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34047", "url": "https://www.uniprot.org/uniprotkb/P34047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLRPKLGFIDLLPRRAMIVS", "down_seq": "PSSSLPRFLRMESQSQLRQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P34047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34047" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P34047-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XPJ6-1.1117.1117", "start_pos": 1117, "end_pos": 1117, "uniprot_canonical_ac": "Q5XPJ6-1", "length": 1170, "uniprot_id": "SCAR4_ARATH", "protein_name": "Protein SCAR4", "refseq_ac": "NP_001318456", "refseq_name": "SCAR family protein 4", "gene_name": "SCAR4", "gene_names_uniprotkb": "SCAR4; ATSCAR4; F7A7.250; F7A7_250; SCAR family protein 4; WAVE3", "gene_names_refseq": "ATSCAR4; F7A7.250; F7A7_250; SCAR family protein 4; SCAR4; WAVE3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XPJ6", "url": "https://www.uniprot.org/uniprotkb/Q5XPJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5XPJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XPJ6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q5XPJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XPJ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "THVGARVDENDSLLEIIRSK", "down_seq": "FNLRPADASGRPNFQVAVPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XPJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XPJ6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1117" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XPJ6-1.638.638", "start_pos": 638, "end_pos": 638, "uniprot_canonical_ac": "Q5XPJ6-1", "length": 1170, "uniprot_id": "SCAR4_ARATH", "protein_name": "Protein SCAR4", "refseq_ac": "NP_001318456", "refseq_name": "SCAR family protein 4", "gene_name": "SCAR4", "gene_names_uniprotkb": "SCAR4; ATSCAR4; F7A7.250; F7A7_250; SCAR family protein 4; WAVE3", "gene_names_refseq": "ATSCAR4; F7A7.250; F7A7_250; SCAR family protein 4; SCAR4; WAVE3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XPJ6", "url": "https://www.uniprot.org/uniprotkb/Q5XPJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q5XPJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XPJ6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q5XPJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XPJ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FEDLSLSADAQDYAAPKEDE", "down_seq": "NSQDGSSMNPAQSKHISTSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XPJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XPJ6" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr638" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AWT8-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q6AWT8-1", "length": 251, "uniprot_id": "GG3_ARATH", "protein_name": "Guanine nucleotide-binding protein subunit gamma 3", "refseq_ac": "NP_680175", "refseq_name": "guanine nucleotide-binding protein subunit gamma", "gene_name": "AGG3; GG3", "gene_names_uniprotkb": "AGG3; GG3; AGG3; T1M15", "gene_names_refseq": "AGG3; Arabidopsis G protein gamma subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6AWT8", "url": "https://www.uniprot.org/uniprotkb/Q6AWT8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6AWT8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AWT8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6AWT8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AWT8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGGVSSSSLAPSSLPPPRPK", "down_seq": "PPEYPDLYGKRREAARVQML", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6AWT8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AWT8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q67ZM4-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q67ZM4-1", "length": 137, "uniprot_id": "ADF7_ARATH", "protein_name": "Actin-depolymerizing factor 7", "refseq_ac": "NP_001329121", "refseq_name": "actin depolymerizing factor 7", "gene_name": "ADF7", "gene_names_uniprotkb": "ADF7; M7J2.40; M7J2_40; actin depolymerizing factor 7", "gene_names_refseq": "ADF7; M7J2.40; M7J2_40; actin depolymerizing factor 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67ZM4", "url": "https://www.uniprot.org/uniprotkb/Q67ZM4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67ZM4", "url": "https://www.uniprot.org/uniprotkb/Q67ZM4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANAA", "down_seq": "GMAVEDECKLKFLELKSKRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q67ZM4", "url": "https://www.uniprot.org/uniprotkb/Q67ZM4" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q43385-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q43385-1", "length": 296, "uniprot_id": "DOF37_ARATH", "protein_name": "Dof zinc finger protein DOF3.7", "refseq_ac": "NP_001078327", "refseq_name": "Dof-type zinc finger DNA-binding family protein", "gene_name": "DAG1; DOF3.7", "gene_names_uniprotkb": "DAG1; DOF3.7; BBFA; DAG1; F21F14.20; dof affecting germination 1", "gene_names_refseq": "BBFA; DAG1; dof affecting germination 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43385", "url": "https://www.uniprot.org/uniprotkb/Q43385" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q43385", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q43385" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q43385", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q43385", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q43385", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q43385" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "81", "end_pos": "81" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q43385-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "Q43385-1", "length": 296, "uniprot_id": "DOF37_ARATH", "protein_name": "Dof zinc finger protein DOF3.7", "refseq_ac": "NP_001078327", "refseq_name": "Dof-type zinc finger DNA-binding family protein", "gene_name": "DAG1; DOF3.7", "gene_names_uniprotkb": "DAG1; DOF3.7; BBFA; DAG1; F21F14.20; dof affecting germination 1", "gene_names_refseq": "BBFA; DAG1; dof affecting germination 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43385", "url": "https://www.uniprot.org/uniprotkb/Q43385" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q43385", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43385" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q43385", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43385", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATMETRKARPQEKVNCPRCN", "down_seq": "TNTKFCYYNNYSLTQPRYFC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q43385", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43385" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser81" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "81", "end_pos": "81" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q43385-1.93.93", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q43385-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "Q43385-1", "length": 296, "uniprot_id": "DOF37_ARATH", "protein_name": "Dof zinc finger protein DOF3.7", "refseq_ac": "NP_001078327", "refseq_name": "Dof-type zinc finger DNA-binding family protein", "gene_name": "DAG1; DOF3.7", "gene_names_uniprotkb": "DAG1; DOF3.7; BBFA; DAG1; F21F14.20; dof affecting germination 1", "gene_names_refseq": "BBFA; DAG1; dof affecting germination 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43385", "url": "https://www.uniprot.org/uniprotkb/Q43385" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q43385", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43385" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q43385", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43385", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVNCPRCNSTNTKFCYYNNY", "down_seq": "LTQPRYFCKGCRRYWTEGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q43385", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43385" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "81", "end_pos": "81" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q43385-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q304B9-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q304B9-1", "length": 757, "uniprot_id": "NCER2_ARATH", "protein_name": "Neutral ceramidase 2", "refseq_ac": "NP_181337", "refseq_name": "Neutral/alkaline non-lysosomal ceramidase", "gene_name": "ATNCER2; NCER2", "gene_names_uniprotkb": "ATNCER2; NCER2; T8P21.8; T8P21_8", "gene_names_refseq": "T8P21.8; T8P21_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YKSSRGHSVDKSLDVKTRVR", "down_seq": "GSKRKFVSAFCQSNCGDVSP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn311", "evidence": [ { "id": "Q304B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q304B9#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "657", "end_pos": "657" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "624", "end_pos": "624" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q304B9-1.348.348", "start_pos": 348, "end_pos": 348, "uniprot_canonical_ac": "Q304B9-1", "length": 757, "uniprot_id": "NCER2_ARATH", "protein_name": "Neutral ceramidase 2", "refseq_ac": "NP_181337", "refseq_name": "Neutral/alkaline non-lysosomal ceramidase", "gene_name": "ATNCER2; NCER2", "gene_names_uniprotkb": "ATNCER2; NCER2; T8P21.8; T8P21_8", "gene_names_refseq": "T8P21.8; T8P21_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DVSPNTLGTFCIDTGLPCDF", "down_seq": "HSTCNGQNELCYGRGPGYPD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn348", "evidence": [ { "id": "Q304B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q304B9#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "657", "end_pos": "657" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "624", "end_pos": "624" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q304B9-1.657.657", "start_pos": 657, "end_pos": 657, "uniprot_canonical_ac": "Q304B9-1", "length": 757, "uniprot_id": "NCER2_ARATH", "protein_name": "Neutral ceramidase 2", "refseq_ac": "NP_181337", "refseq_name": "Neutral/alkaline non-lysosomal ceramidase", "gene_name": "ATNCER2; NCER2", "gene_names_uniprotkb": "ATNCER2; NCER2; T8P21.8; T8P21_8", "gene_names_refseq": "T8P21.8; T8P21_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FGDVKADVPPKSTFRRGQQV", "down_seq": "ATFWSGCPRNDLMTEGSFAV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "Q304B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q304B9#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "657", "end_pos": "657" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "624", "end_pos": "624" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q304B9-1.624.624", "start_pos": 624, "end_pos": 624, "uniprot_canonical_ac": "Q304B9-1", "length": 757, "uniprot_id": "NCER2_ARATH", "protein_name": "Neutral ceramidase 2", "refseq_ac": "NP_181337", "refseq_name": "Neutral/alkaline non-lysosomal ceramidase", "gene_name": "ATNCER2; NCER2", "gene_names_uniprotkb": "ATNCER2; NCER2; T8P21.8; T8P21_8", "gene_names_refseq": "T8P21.8; T8P21_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q304B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304B9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTLPRGPQPPDLLDKQISLL", "down_seq": "PVVVDSTPLGVKFGDVKADV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q304B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304B9" } ], "site_lbl": "Ser624" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "657", "end_pos": "657" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "624", "end_pos": "624" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q304B9-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q304B9-1.631.631", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q304B9-1.630.630", "start_pos": 630, "end_pos": 630, "uniprot_canonical_ac": "Q304B9-1", "length": 757, "uniprot_id": "NCER2_ARATH", "protein_name": "Neutral ceramidase 2", "refseq_ac": "NP_181337", "refseq_name": "Neutral/alkaline non-lysosomal ceramidase", "gene_name": "ATNCER2; NCER2", "gene_names_uniprotkb": "ATNCER2; NCER2; T8P21.8; T8P21_8", "gene_names_refseq": "T8P21.8; T8P21_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q304B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304B9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQPPDLLDKQISLLSPVVVD", "down_seq": "TPLGVKFGDVKADVPPKSTF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q304B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304B9" } ], "site_lbl": "Ser630" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "657", "end_pos": "657" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "624", "end_pos": "624" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q304B9-1.624.624", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q304B9-1.631.631", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q304B9-1.631.631", "start_pos": 631, "end_pos": 631, "uniprot_canonical_ac": "Q304B9-1", "length": 757, "uniprot_id": "NCER2_ARATH", "protein_name": "Neutral ceramidase 2", "refseq_ac": "NP_181337", "refseq_name": "Neutral/alkaline non-lysosomal ceramidase", "gene_name": "ATNCER2; NCER2", "gene_names_uniprotkb": "ATNCER2; NCER2; T8P21.8; T8P21_8", "gene_names_refseq": "T8P21.8; T8P21_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304B9", "url": "https://www.uniprot.org/uniprotkb/Q304B9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q304B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304B9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QPPDLLDKQISLLSPVVVDS", "down_seq": "PLGVKFGDVKADVPPKSTFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q304B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304B9" } ], "site_lbl": "Thr631" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "657", "end_pos": "657" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "624", "end_pos": "624" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q304B9-1.624.624", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q304B9-1.630.630", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94017-1.605.605", "start_pos": 605, "end_pos": 605, "uniprot_canonical_ac": "P94017-1", "length": 692, "uniprot_id": "CAP9_ARATH", "protein_name": "Putative clathrin assembly protein At1g14910", "refseq_ac": "", "refseq_name": "", "gene_name": "PICALM1B", "gene_names_uniprotkb": "PICALM1B; F10B6.32; F10B6_32", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94017", "url": "https://www.uniprot.org/uniprotkb/P94017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FPVVPVSEPQNITGFGALPV", "down_seq": "PASEPSNTTGFGEFPVVSVS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr605", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "605", "end_pos": "605" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94017-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "P94017-1", "length": 692, "uniprot_id": "CAP9_ARATH", "protein_name": "Putative clathrin assembly protein At1g14910", "refseq_ac": "", "refseq_name": "", "gene_name": "PICALM1B", "gene_names_uniprotkb": "PICALM1B; F10B6.32; F10B6_32", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94017", "url": "https://www.uniprot.org/uniprotkb/P94017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94017", "url": "https://www.uniprot.org/uniprotkb/P94017", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HETSSPSDSAVVPSEETQLS", "down_seq": "QSPPSVETPQNFIDTDDLLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P94017", "url": "https://www.uniprot.org/uniprotkb/P94017" } ], "site_lbl": "Ser363" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "605", "end_pos": "605" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEF8-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "Q1PEF8-1", "length": 590, "uniprot_id": "INV2_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV2", "refseq_ac": "NP_190828", "refseq_name": "cell wall invertase 2", "gene_name": "CWINV2", "gene_names_uniprotkb": "CWINV2; AtCWIN2; AtcwINV2; BFRUCT2; F22O6.20; F3C22.4; cell wall invertase 2", "gene_names_refseq": "AtCWIN2; AtcwINV2; CWINV2; F3C22.4; cell wall invertase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DLINWEALEPAIYPSKWFDI", "down_seq": "GTWSGSATHVPGKGPVILYT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn118", "evidence": [ { "id": "Q1PEF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "564", "end_pos": "564" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEF8-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q1PEF8-1", "length": 590, "uniprot_id": "INV2_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV2", "refseq_ac": "NP_190828", "refseq_name": "cell wall invertase 2", "gene_name": "CWINV2", "gene_names_uniprotkb": "CWINV2; AtCWIN2; AtcwINV2; BFRUCT2; F22O6.20; F3C22.4; cell wall invertase 2", "gene_names_refseq": "AtCWIN2; AtcwINV2; CWINV2; F3C22.4; cell wall invertase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GSATHVPGKGPVILYTGITE", "down_seq": "QTQIQNYAIPQDLSDPYLKT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn143", "evidence": [ { "id": "Q1PEF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "564", "end_pos": "564" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEF8-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q1PEF8-1", "length": 590, "uniprot_id": "INV2_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV2", "refseq_ac": "NP_190828", "refseq_name": "cell wall invertase 2", "gene_name": "CWINV2", "gene_names_uniprotkb": "CWINV2; AtCWIN2; AtcwINV2; BFRUCT2; F22O6.20; F3C22.4; cell wall invertase 2", "gene_names_refseq": "AtCWIN2; AtcwINV2; CWINV2; F3C22.4; cell wall invertase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YLKTWIKPDDNPIVKPDNGE", "down_seq": "GSAFRDPTTAWFNKKDGYWR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn180", "evidence": [ { "id": "Q1PEF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "564", "end_pos": "564" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEF8-1.335.335", "start_pos": 335, "end_pos": 335, "uniprot_canonical_ac": "Q1PEF8-1", "length": 590, "uniprot_id": "INV2_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV2", "refseq_ac": "NP_190828", "refseq_name": "cell wall invertase 2", "gene_name": "CWINV2", "gene_names_uniprotkb": "CWINV2; AtCWIN2; AtcwINV2; BFRUCT2; F22O6.20; F3C22.4; cell wall invertase 2", "gene_names_refseq": "AtCWIN2; AtcwINV2; CWINV2; F3C22.4; cell wall invertase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YASKTFFDDKTNRRILWGWA", "down_seq": "ESDTVQDDTVKGWAGIQLIP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn335", "evidence": [ { "id": "Q1PEF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "564", "end_pos": "564" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEF8-1.564.564", "start_pos": 564, "end_pos": 564, "uniprot_canonical_ac": "Q1PEF8-1", "length": 590, "uniprot_id": "INV2_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV2", "refseq_ac": "NP_190828", "refseq_name": "cell wall invertase 2", "gene_name": "CWINV2", "gene_names_uniprotkb": "CWINV2; AtCWIN2; AtcwINV2; BFRUCT2; F22O6.20; F3C22.4; cell wall invertase 2", "gene_names_refseq": "AtCWIN2; AtcwINV2; CWINV2; F3C22.4; cell wall invertase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEF8", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TSRVYPTKAVGEKAHLFVFN", "down_seq": "GSQPVTVESLNAWNMQKPLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn564", "evidence": [ { "id": "Q1PEF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEF8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "564", "end_pos": "564" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEP5-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "Q1PEP5-1", "length": 636, "uniprot_id": "NUCL2_ARATH", "protein_name": "Nucleolin 2", "refseq_ac": "NP_188491", "refseq_name": "nucleolin like 2", "gene_name": "NUC-L2; NUCL2", "gene_names_uniprotkb": "NUC-L2; NUCL2; ATNUC-L2; ATRANGAP1; K24M9.11; NUC2; PARALLEL1-LIKE 1; PARLL1; nucleolin 2; nucleolin like 2", "gene_names_refseq": "ATNUC-L2; ATRANGAP1; NUC-L2; NUC2; PARALLEL1-LIKE 1; PARLL1; RAN GTPASE-ACTIVATING PROTEIN 1; nucleolin 2; nucleolin like 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEP5", "url": "https://www.uniprot.org/uniprotkb/Q1PEP5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EKAKAESSSSDDGSSSDEEP", "down_seq": "PAKKEPIVVKKDSSDESSSD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr224", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "279", "end_pos": "279" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "356", "end_pos": "356" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEP5-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q1PEP5-1", "length": 636, "uniprot_id": "NUCL2_ARATH", "protein_name": "Nucleolin 2", "refseq_ac": "NP_188491", "refseq_name": "nucleolin like 2", "gene_name": "NUC-L2; NUCL2", "gene_names_uniprotkb": "NUC-L2; NUCL2; ATNUC-L2; ATRANGAP1; K24M9.11; NUC2; PARALLEL1-LIKE 1; PARLL1; nucleolin 2; nucleolin like 2", "gene_names_refseq": "ATNUC-L2; ATRANGAP1; NUC-L2; NUC2; PARALLEL1-LIKE 1; PARLL1; RAN GTPASE-ACTIVATING PROTEIN 1; nucleolin 2; nucleolin like 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEP5", "url": "https://www.uniprot.org/uniprotkb/Q1PEP5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KDAKAESSSSEEESSSDDEP", "down_seq": "PAKKPTVVKNAKPAAKDSSS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "279", "end_pos": "279" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "356", "end_pos": "356" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEP5-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "Q1PEP5-1", "length": 636, "uniprot_id": "NUCL2_ARATH", "protein_name": "Nucleolin 2", "refseq_ac": "NP_188491", "refseq_name": "nucleolin like 2", "gene_name": "NUC-L2; NUCL2", "gene_names_uniprotkb": "NUC-L2; NUCL2; ATNUC-L2; ATRANGAP1; K24M9.11; NUC2; PARALLEL1-LIKE 1; PARLL1; nucleolin 2; nucleolin like 2", "gene_names_refseq": "ATNUC-L2; ATRANGAP1; NUC-L2; NUC2; PARALLEL1-LIKE 1; PARLL1; RAN GTPASE-ACTIVATING PROTEIN 1; nucleolin 2; nucleolin like 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEP5", "url": "https://www.uniprot.org/uniprotkb/Q1PEP5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDESDKEESKDEKVTPKKKD", "down_seq": "DVEMVDAEQKSNAKQPKTPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser356" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "279", "end_pos": "279" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "356", "end_pos": "356" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1PEP5-1.97.97", "start_pos": 97, "end_pos": 97, "uniprot_canonical_ac": "Q1PEP5-1", "length": 636, "uniprot_id": "NUCL2_ARATH", "protein_name": "Nucleolin 2", "refseq_ac": "NP_188491", "refseq_name": "nucleolin like 2", "gene_name": "NUC-L2; NUCL2", "gene_names_uniprotkb": "NUC-L2; NUCL2; ATNUC-L2; ATRANGAP1; K24M9.11; NUC2; PARALLEL1-LIKE 1; PARLL1; nucleolin 2; nucleolin like 2", "gene_names_refseq": "ATNUC-L2; ATRANGAP1; NUC-L2; NUC2; PARALLEL1-LIKE 1; PARLL1; RAN GTPASE-ACTIVATING PROTEIN 1; nucleolin 2; nucleolin like 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEP5", "url": "https://www.uniprot.org/uniprotkb/Q1PEP5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTKETPSKLKDESSSEEEDD", "down_seq": "SSDEEIAPAKKRPEPIKKAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1PEP5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PEP5" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser97" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "279", "end_pos": "279" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "356", "end_pos": "356" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-10-18", "authors": "Chac\u00f3n Mica\u00ebla G, Fournier Ashley E, Tran Frances, Dittrich-Domergue Franziska, Pulsifer Ian P, Domergue Fr\u00e9d\u00e9ric, Rowland Owen", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "reference": [ { "type": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "crossref": [ { "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TLSMKELGMERAKLHGWPNT", "down_seq": "VFTKSMGEMLLGKHKENLPL", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" }, { "database": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q0WRB0-1.242.242", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-10-18", "authors": "Chac\u00f3n Mica\u00ebla G, Fournier Ashley E, Tran Frances, Dittrich-Domergue Franziska, Pulsifer Ian P, Domergue Fr\u00e9d\u00e9ric, Rowland Owen", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "reference": [ { "type": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "crossref": [ { "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "KELGMERAKLHGWPNTYVFT", "down_seq": "SMGEMLLGKHKENLPLVIIR", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "I", "comment": "Loss of enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" }, { "database": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WRB0-1.238.238", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-10-18", "authors": "Chac\u00f3n Mica\u00ebla G, Fournier Ashley E, Tran Frances, Dittrich-Domergue Franziska, Pulsifer Ian P, Domergue Fr\u00e9d\u00e9ric, Rowland Owen", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "reference": [ { "type": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "crossref": [ { "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AGGSGVHMVYHVGSSHQNPV", "down_seq": "FGEIHEIAVRYFTKNPLRSR", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "Decreases protein stability and enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" }, { "database": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q0WRB0-1.355.355", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WRB0-1.363.363", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-10-18", "authors": "Chac\u00f3n Mica\u00ebla G, Fournier Ashley E, Tran Frances, Dittrich-Domergue Franziska, Pulsifer Ian P, Domergue Fr\u00e9d\u00e9ric, Rowland Owen", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "reference": [ { "type": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "crossref": [ { "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "VYHVGSSHQNPVTFGEIHEI", "down_seq": "VRYFTKNPLRSRNGSLITVS", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "L", "comment": "Catalyzes the formation of C16:0 fatty alcohol instead of C18:0; when associated with M-377.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" }, { "database": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0WRB0-1.347.347", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WRB0-1.363.363", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WRB0-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q0WRB0-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q0WRB0-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-10-18", "authors": "Chac\u00f3n Mica\u00ebla G, Fournier Ashley E, Tran Frances, Dittrich-Domergue Franziska, Pulsifer Ian P, Domergue Fr\u00e9d\u00e9ric, Rowland Owen", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "reference": [ { "type": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "crossref": [ { "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "QNPVTFGEIHEIAVRYFTKN", "down_seq": "LRSRNGSLITVSKVRFIPTM", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "Decreases protein stability and enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" }, { "database": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0WRB0-1.347.347", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WRB0-1.355.355", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WRB0-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WRB0-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WRB0-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WRB0-1.377.377", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-10-18", "authors": "Chac\u00f3n Mica\u00ebla G, Fournier Ashley E, Tran Frances, Dittrich-Domergue Franziska, Pulsifer Ian P, Domergue Fr\u00e9d\u00e9ric, Rowland Owen", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "reference": [ { "type": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "crossref": [ { "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "RYFTKNPLRSRNGSLITVSK", "down_seq": "RFIPTMALFSLYMTLRYKLP", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "M", "comment": "Catalyzes the formation of C16:0 fatty alcohol instead of C18:0; when associated with L-355.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" }, { "database": "PubMed", "id": "24005667", "url": "https://glygen.org/publication/PubMed/24005667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WRB0-1.363.363", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WRB0-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WRB0-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WRB0-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRB0-1.370.370", "start_pos": 370, "end_pos": 370, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WRB0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRB0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EIHEIAVRYFTKNPLRSRNG", "down_seq": "LITVSKVRFIPTMALFSLYM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WRB0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRB0" } ], "site_lbl": "Ser370" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q0WRB0-1.355.355", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WRB0-1.363.363", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WRB0-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WRB0-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WRB0-1.377.377", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WRB0-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WRB0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRB0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EIAVRYFTKNPLRSRNGSLI", "down_seq": "VSKVRFIPTMALFSLYMTLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WRB0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRB0" } ], "site_lbl": "Thr373" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q0WRB0-1.355.355", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WRB0-1.363.363", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WRB0-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WRB0-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WRB0-1.377.377", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WRB0-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "Q0WRB0-1", "length": 496, "uniprot_id": "FACR5_ARATH", "protein_name": "Probable fatty acyl-CoA reductase 5", "refseq_ac": "NP_190041", "refseq_name": "fatty acid reductase 5", "gene_name": "FAR5", "gene_names_uniprotkb": "FAR5; F14L2.100; fatty acid reductase 5", "gene_names_refseq": "FAR5; fatty acid reductase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRB0", "url": "https://www.uniprot.org/uniprotkb/Q0WRB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WRB0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRB0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVRYFTKNPLRSRNGSLITV", "down_seq": "KVRFIPTMALFSLYMTLRYK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WRB0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRB0" } ], "site_lbl": "Ser375" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "377", "end_pos": "377" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "370", "end_pos": "370" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WRB0-1.355.355", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q0WRB0-1.363.363", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WRB0-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WRB0-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WRB0-1.377.377", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54121-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "P54121-1", "length": 170, "uniprot_id": "AIG2A_ARATH", "protein_name": "Protein AIG2 A", "refseq_ac": "NP_001326185", "refseq_name": "AIG2-like (avirulence induced gene) family protein", "gene_name": "AIG2A; AIG2", "gene_names_uniprotkb": "AIG2A; AIG2; AIG2; AVRRPT2-INDUCED GENE 2; K5K13.3; K5K13_1", "gene_names_refseq": "AIG2; AVRRPT2-INDUCED GENE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54121", "url": "https://www.uniprot.org/uniprotkb/P54121" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WKKNPNGRSREEFEKFVQDD", "down_seq": "SPASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P54121-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P54121-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54121-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "P54121-1", "length": 170, "uniprot_id": "AIG2A_ARATH", "protein_name": "Protein AIG2 A", "refseq_ac": "NP_001326185", "refseq_name": "AIG2-like (avirulence induced gene) family protein", "gene_name": "AIG2A; AIG2", "gene_names_uniprotkb": "AIG2A; AIG2; AIG2; AVRRPT2-INDUCED GENE 2; K5K13.3; K5K13_1", "gene_names_refseq": "AIG2; AVRRPT2-INDUCED GENE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54121", "url": "https://www.uniprot.org/uniprotkb/P54121" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKNPNGRSREEFEKFVQDDS", "down_seq": "PASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P54121-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P54121-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54121-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "P54121-1", "length": 170, "uniprot_id": "AIG2A_ARATH", "protein_name": "Protein AIG2 A", "refseq_ac": "NP_001326185", "refseq_name": "AIG2-like (avirulence induced gene) family protein", "gene_name": "AIG2A; AIG2", "gene_names_uniprotkb": "AIG2A; AIG2; AIG2; AVRRPT2-INDUCED GENE 2; K5K13.3; K5K13_1", "gene_names_refseq": "AIG2; AVRRPT2-INDUCED GENE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54121", "url": "https://www.uniprot.org/uniprotkb/P54121" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNGRSREEFEKFVQDDSSPA", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P54121", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54121" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P54121-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P54121-1.166.166", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NKQ9-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q6NKQ9-1", "length": 279, "uniprot_id": "PDLP8_ARATH", "protein_name": "Plasmodesmata-located protein 8", "refseq_ac": "NP_001326963", "refseq_name": "plasmodesmata-located protein 8", "gene_name": "PDLP8", "gene_names_uniprotkb": "PDLP8; CRRSP15; T4C21_130", "gene_names_refseq": "PDLP8; plasmodesmata-located protein 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NKQ9", "url": "https://www.uniprot.org/uniprotkb/Q6NKQ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "6GRF", "url": "https://www.rcsb.org/structure/6GRF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GRF|B|72", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "6GRF|A|72", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FLSSVVTSSSDASFNSFAVG", "down_seq": "DSSSSSSSSAVFGLYQCRDD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6GRF&bu=0&command=select+.B:72;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn72", "evidence": [ { "id": "6GRF", "database": "PDB", "url": "https://www.rcsb.org/structure/6GRF" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39251-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q39251-1", "length": 137, "uniprot_id": "ADF2_ARATH", "protein_name": "Actin-depolymerizing factor 2", "refseq_ac": "NP_001327290", "refseq_name": "actin depolymerizing factor 2", "gene_name": "ADF2", "gene_names_uniprotkb": "ADF2; F16L2_210; actin depolymerizing factor 2", "gene_names_refseq": "ADF2; actin depolymerizing factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39251", "url": "https://www.uniprot.org/uniprotkb/Q39251" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39251", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39251" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q39251", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39251", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AVHDDCKLKFMELKAKRTFR", "down_seq": "IVYKIEDKQVIVEKLGEPEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39251", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39251" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "29", "end_pos": "29" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39251-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q39251-1", "length": 137, "uniprot_id": "ADF2_ARATH", "protein_name": "Actin-depolymerizing factor 2", "refseq_ac": "NP_001327290", "refseq_name": "actin depolymerizing factor 2", "gene_name": "ADF2", "gene_names_uniprotkb": "ADF2; F16L2_210; actin depolymerizing factor 2", "gene_names_refseq": "ADF2; actin depolymerizing factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39251", "url": "https://www.uniprot.org/uniprotkb/Q39251" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39251", "url": "https://www.uniprot.org/uniprotkb/Q39251", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANAA", "down_seq": "GMAVHDDCKLKFMELKAKRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39251", "url": "https://www.uniprot.org/uniprotkb/Q39251" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "29", "end_pos": "29" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56YN3-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q56YN3-1", "length": 524, "uniprot_id": "NADK1_ARATH", "protein_name": "NAD(H) kinase 1", "refseq_ac": "NP_974347", "refseq_name": "NAD kinase 1", "gene_name": "NADK1", "gene_names_uniprotkb": "NADK1; ATNADK-1; MSA6.11; NAD KINASE 1; NAD kinase 1", "gene_names_refseq": "ATNADK-1; NAD KINASE 1; NAD kinase 1; NADK1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56YN3", "url": "https://www.uniprot.org/uniprotkb/Q56YN3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q56YN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56YN3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q56YN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56YN3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSSTYKLNHTD", "down_seq": "FANGDAKSLLPNPENGFTHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56YN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56YN3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P94078-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FDYNVQERVNDFVAAALAQV", "down_seq": "VTRTNHIMWLMGTDFRYQYA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn278", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94078-1.336.336", "start_pos": 336, "end_pos": 336, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GRLNVLYSTPSIYTDAKYAA", "down_seq": "ESWPLKTDDFFPYADKPNAY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn336", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94078-1.470.470", "start_pos": 470, "end_pos": 470, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AKSSTEKKNPGTKFQQCPLL", "down_seq": "ISYCPASEARLLSGKSLVVV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn470", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94078-1.638.638", "start_pos": 638, "end_pos": 638, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HLSTKNQVTAEQSYAYYIGS", "down_seq": "GTDKDPQASGAYVFRPDGVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn638", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94078-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PHSHDDVGWLKTVDQYYVGS", "down_seq": "NSIRGACVQNVLDSVIASLL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn64", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94078-1.730.730", "start_pos": 730, "end_pos": 730, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PADDGISKEIITKLTTTMKT", "down_seq": "GTFYTDSNGRDFIKRIRDFR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn730", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94078-1.820.820", "start_pos": 820, "end_pos": 820, "uniprot_canonical_ac": "P94078-1", "length": 1019, "uniprot_id": "MANA1_ARATH", "protein_name": "Alpha-mannosidase At3g26720", "refseq_ac": "NP_189306", "refseq_name": "Glycosyl hydrolase family 38 protein", "gene_name": "MLJ15.11", "gene_names_uniprotkb": "MLJ15.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94078", "url": "https://www.uniprot.org/uniprotkb/P94078", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ELMLHRRMQHDDIRGVGEIL", "down_seq": "ETVCLPEGCKGLTIQGKFYV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn820", "evidence": [ { "id": "P94078", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94078#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "638", "end_pos": "638" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42791-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "P42791-1", "length": 187, "uniprot_id": "RL182_ARATH", "protein_name": "Large ribosomal subunit protein eL18y", "refseq_ac": "", "refseq_name": "", "gene_name": "RPL18B; RPL18", "gene_names_uniprotkb": "RPL18B; RPL18; F18C1.14; F18C1_14; ribosomal protein L18", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42791", "url": "https://www.uniprot.org/uniprotkb/P42791" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42791", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42791" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42791", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42791", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGIDLIAGGKSKKTKRTAPK", "down_seq": "DDVYLKLTVKLYRFLVRRTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42791", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42791" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1G1A4-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "Q1G1A4-1", "length": 756, "uniprot_id": "LAS1_ARATH", "protein_name": "Lanosterol synthase", "refseq_ac": "NP_001327787", "refseq_name": "lanosterol synthase 1", "gene_name": "LAS1", "gene_names_uniprotkb": "LAS1; LSS; T14D3.70; lanosterol synthase 1", "gene_names_refseq": "LAS1; lanosterol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1G1A4", "url": "https://www.uniprot.org/uniprotkb/Q1G1A4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1G1A4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G1A4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HCRMVYLPMSYLYGRRFVCR", "down_seq": "NGTILSLRRELYTIPYHHID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1G1A4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G1A4" } ], "site_lbl": "Thr277" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "277", "end_pos": "277" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SXB6-1.473.473", "start_pos": 473, "end_pos": 473, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATALKKWHHTAKNETKHGRH", "down_seq": "GSNTPFSSRPTTPTHGSSPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser473" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9SXB6-1.477.477", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SXB6-1.477.477", "start_pos": 477, "end_pos": 477, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KKWHHTAKNETKHGRHSGSN", "down_seq": "PFSSRPTTPTHGSSPIHLLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr477" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9SXB6-1.473.473", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SXB6-1.509.509", "start_pos": 509, "end_pos": 509, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" }, { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSSPIHLLHNFNNRSVENYP", "down_seq": "SPSPRYSGHGHHEHQFWDPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser509" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9SXB6-1.510.510", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SXB6-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SXB6-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" }, { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSPIHLLHNFNNRSVENYPS", "down_seq": "PSPRYSGHGHHEHQFWDPES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser510" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9SXB6-1.509.509", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9SXB6-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SXB6-1.512.512", "start_pos": 512, "end_pos": 512, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" }, { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PIHLLHNFNNRSVENYPSSP", "down_seq": "PRYSGHGHHEHQFWDPESQH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser512" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9SXB6-1.509.509", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9SXB6-1.510.510", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SXB6-1.565.565", "start_pos": 565, "end_pos": 565, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HESSEPVLASVELPPIRTSK", "down_seq": "LRDFSFKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser565" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9SXB6-1.570.570", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SXB6-1.570.570", "start_pos": 570, "end_pos": 570, "uniprot_canonical_ac": "Q9SXB6-1", "length": 573, "uniprot_id": "MLO2_ARATH", "protein_name": "MLO-like protein 2", "refseq_ac": "NP_172598", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO2", "gene_names_uniprotkb": "MLO2; ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "gene_names_refseq": "ATMLO2; MILDEW RESISTANCE LOCUS O 2; MLO2; PMR2; POWDERY MILDEW RESISTANT 2; T28P6.4; T28P6_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SXB6", "url": "https://www.uniprot.org/uniprotkb/Q9SXB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVLASVELPPIRTSKSLRDF", "down_seq": "FKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SXB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SXB6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser570" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "473", "end_pos": "473" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "565", "end_pos": "565" }, { "start_pos": "570", "end_pos": "570" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9SXB6-1.565.565", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KNALAELKELVREALNKREF", "down_seq": "APPPPPAPVKEEKVEEKKTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr115" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEKKTEETEEKKEEVKTEEK", "down_seq": "LEAETKEEEKSAAPATVETK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PAAPVVAETKKEEILPAAPV", "down_seq": "TETKVEEKVVPVETTPAAPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr221" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TETKVEEKVVPVETTPAAPV", "down_seq": "TETKEEEKAAPVTTETKEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.403.403", "start_pos": 403, "end_pos": 403, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FTMLKNTVQWRKENKIDDLV", "down_seq": "EDLEGSEFEKLVFTHGVDKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser403" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q56ZI2-1.409.409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TVQWRKENKIDDLVSEDLEG", "down_seq": "EFEKLVFTHGVDKQGHVVIY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q56ZI2-1.403.403", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTTEKAVAAPAPEATEEKVV", "down_seq": "EVAVPETEVTAVKEEEVATG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.536.536", "start_pos": 536, "end_pos": 536, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Identification of Phosphoinositide-Binding Protein PATELLIN2 as a Substrate of Arabidopsis MPK4 MAP Kinase during Septum Formation in Cytokinesis.", "journal": "Plant & cell physiology", "date": "2016-08", "authors": "Suzuki Takamasa, Matsushima Chiyuki, Nishimura Shingo, Higashiyama Tetsuya, Sasabe Michiko, Machida Yasunori", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "27335345", "url": "https://glygen.org/publication/PubMed/27335345" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27335345", "url": "https://glygen.org/publication/PubMed/27335345", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FINVPWWYIPYYKTFGSIIT", "down_seq": "PRTRSKMVLSGPSKSAETIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27335345", "url": "https://glygen.org/publication/PubMed/27335345" } ], "site_lbl": "Ser536" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.568.568", "start_pos": 568, "end_pos": 568, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANK1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANK1" }, { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PSKSAETIFKYVAPEVVPVK", "down_seq": "GGLSKDSPFTVEDGVTEAVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ], "site_lbl": "Tyr568" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.664.664", "start_pos": 664, "end_pos": 664, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TDEPVITDSFKASEAGKVVI", "down_seq": "IDNQTFKKKKVLYRSKTQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "site_lbl": "Thr664" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q56ZI2-1.669.669", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56ZI2-1.669.669", "start_pos": 669, "end_pos": 669, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ITDSFKASEAGKVVITIDNQ", "down_seq": "FKKKKVLYRSKTQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "site_lbl": "Thr669" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q56ZI2-1.664.664", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56ZI2-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETEVTAVKEEEVATGKEILQ", "down_seq": "ESFKEEGYLASELQEAEKNA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q56ZI2-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q56ZI2-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" }, { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVTAVKEEEVATGKEILQSE", "down_seq": "FKEEGYLASELQEAEKNALA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q56ZI2-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q56ZI2-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZI2-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q56ZI2-1", "length": 683, "uniprot_id": "PATL2_ARATH", "protein_name": "Patellin-2", "refseq_ac": "NP_173669", "refseq_name": "PATELLIN 2", "gene_name": "PATL2", "gene_names_uniprotkb": "PATL2; F12K8.13; F12K8_13; PATELLIN 2", "gene_names_refseq": "F12K8.13; F12K8_13; PATELLIN 2; PATL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZI2", "url": "https://www.uniprot.org/uniprotkb/Q56ZI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EEEVATGKEILQSESFKEEG", "down_seq": "LASELQEAEKNALAELKELV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56ZI2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56ZI2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Tyr85" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "403", "end_pos": "403" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "536", "end_pos": "536" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q56ZI2-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q56ZI2-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q67XZ3-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "Q67XZ3-1", "length": 594, "uniprot_id": "INV3_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV3", "refseq_ac": "NP_564676", "refseq_name": "beta-fructofuranosidase 5", "gene_name": "CWINV3; FRUCT5", "gene_names_uniprotkb": "CWINV3; FRUCT5; 6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "gene_names_refseq": "6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ILYTGIDQNKGQVQNVAVPV", "down_seq": "ISDPYLREWSKPPQNPLMTT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn147", "evidence": [ { "id": "Q67XZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q67XZ3-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "Q67XZ3-1", "length": 594, "uniprot_id": "INV3_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV3", "refseq_ac": "NP_564676", "refseq_name": "beta-fructofuranosidase 5", "gene_name": "CWINV3; FRUCT5", "gene_names_uniprotkb": "CWINV3; FRUCT5; 6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "gene_names_refseq": "6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GSSTDDRRGLAILYKSRDFF", "down_seq": "WTQSMKPLHYEDLTGMWECP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn217", "evidence": [ { "id": "Q67XZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q67XZ3-1.297.297", "start_pos": 297, "end_pos": 297, "uniprot_canonical_ac": "Q67XZ3-1", "length": 594, "uniprot_id": "INV3_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV3", "refseq_ac": "NP_564676", "refseq_name": "beta-fructofuranosidase 5", "gene_name": "CWINV3; FRUCT5", "gene_names_uniprotkb": "CWINV3; FRUCT5; 6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "gene_names_refseq": "6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TIGSYDREKDVYVPDLGFVQ", "down_seq": "ESAPRLDYGKYYASKTFYDD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn297", "evidence": [ { "id": "Q67XZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q67XZ3-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "Q67XZ3-1", "length": 594, "uniprot_id": "INV3_ARATH", "protein_name": "Beta-fructofuranosidase, insoluble isoenzyme CWINV3", "refseq_ac": "NP_564676", "refseq_name": "beta-fructofuranosidase 5", "gene_name": "CWINV3; FRUCT5", "gene_names_uniprotkb": "CWINV3; FRUCT5; 6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "gene_names_refseq": "6-fructan exohydrolase; ATFRUCT5; AtcwINV3; BETA-FRUCTOFURANOSIDASE; FRUCT5; T7N22.6; T7N22_6; beta-fructofuranosidase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67XZ3", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YASKTFYDDVKKRRILWGWV", "down_seq": "ESSPAKDDIEKGWSGLQSFP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn329", "evidence": [ { "id": "Q67XZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q67XZ3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2V4L8-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "Q2V4L8-1", "length": 484, "uniprot_id": "GUN3_ARATH", "protein_name": "Endoglucanase 3", "refseq_ac": "NP_001031082", "refseq_name": "cellulase 5", "gene_name": "CEL5", "gene_names_uniprotkb": "CEL5; ATCEL5; ATGH9B4; F19G10.16; F19G10_16; cellulase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA CELLULASE 5; ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4; ATCEL5; ATGH9B4; CEL5; F19G10.16; F19G10_16; cellulase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V4L8", "url": "https://www.uniprot.org/uniprotkb/Q2V4L8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QNSRVAIRWATDYLLKCARA", "down_seq": "PGKLYVGVGDPNGDHKCWER", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr128", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2V4L8-1.370.370", "start_pos": 370, "end_pos": 370, "uniprot_canonical_ac": "Q2V4L8-1", "length": 484, "uniprot_id": "GUN3_ARATH", "protein_name": "Endoglucanase 3", "refseq_ac": "NP_001031082", "refseq_name": "cellulase 5", "gene_name": "CEL5", "gene_names_uniprotkb": "CEL5; ATCEL5; ATGH9B4; F19G10.16; F19G10_16; cellulase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA CELLULASE 5; ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4; ATCEL5; ATGH9B4; CEL5; F19G10.16; F19G10_16; cellulase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V4L8", "url": "https://www.uniprot.org/uniprotkb/Q2V4L8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2V4L8", "url": "https://www.uniprot.org/uniprotkb/Q2V4L8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KSTKQTFNCGNSLIVPNALI", "down_seq": "LSKRQVDYVLGVNPMKMSYM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn370", "evidence": [ { "id": "Q2V4L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2V4L8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P52901-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "P52901-1", "length": 389, "uniprot_id": "ODPA1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial", "refseq_ac": "NP_176198", "refseq_name": "pyruvate dehydrogenase complex E1 alpha subunit", "gene_name": "E1 ALPHA; E1", "gene_names_uniprotkb": "E1 ALPHA; E1; AT-E1 ALPHA; E1 ALPHA; F23H11.21", "gene_names_refseq": "AT-E1 ALPHA; E1 ALPHA; PYRUVATE DEHYDROGENASE E1 ALPHA SUBUNIT; pyruvate dehydrogenase complex E1 alpha subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P52901", "url": "https://www.uniprot.org/uniprotkb/P52901" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILVCENNHYGMGTAEWRAAK", "down_seq": "PSYYKRGDYVPGLKVDGMDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52901-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "P52901-1", "length": 389, "uniprot_id": "ODPA1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial", "refseq_ac": "NP_176198", "refseq_name": "pyruvate dehydrogenase complex E1 alpha subunit", "gene_name": "E1 ALPHA; E1", "gene_names_uniprotkb": "E1 ALPHA; E1; AT-E1 ALPHA; E1 ALPHA; F23H11.21", "gene_names_refseq": "AT-E1 ALPHA; E1 ALPHA; PYRUVATE DEHYDROGENASE E1 ALPHA SUBUNIT; pyruvate dehydrogenase complex E1 alpha subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P52901", "url": "https://www.uniprot.org/uniprotkb/P52901" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "FAKQHALEKGPIILEMDTYR", "down_seq": "HGHSMSDPGSTYRTRDEISG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr288" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P52901-1.292.292", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P52901-1.294.294", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52901-1.292.292", "start_pos": 292, "end_pos": 292, "uniprot_canonical_ac": "P52901-1", "length": 389, "uniprot_id": "ODPA1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial", "refseq_ac": "NP_176198", "refseq_name": "pyruvate dehydrogenase complex E1 alpha subunit", "gene_name": "E1 ALPHA; E1", "gene_names_uniprotkb": "E1 ALPHA; E1; AT-E1 ALPHA; E1 ALPHA; F23H11.21", "gene_names_refseq": "AT-E1 ALPHA; E1 ALPHA; PYRUVATE DEHYDROGENASE E1 ALPHA SUBUNIT; pyruvate dehydrogenase complex E1 alpha subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P52901", "url": "https://www.uniprot.org/uniprotkb/P52901" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HALEKGPIILEMDTYRYHGH", "down_seq": "MSDPGSTYRTRDEISGVRQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser292" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P52901-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P52901-1.294.294", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52901-1.294.294", "start_pos": 294, "end_pos": 294, "uniprot_canonical_ac": "P52901-1", "length": 389, "uniprot_id": "ODPA1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial", "refseq_ac": "NP_176198", "refseq_name": "pyruvate dehydrogenase complex E1 alpha subunit", "gene_name": "E1 ALPHA; E1", "gene_names_uniprotkb": "E1 ALPHA; E1; AT-E1 ALPHA; E1 ALPHA; F23H11.21", "gene_names_refseq": "AT-E1 ALPHA; E1 ALPHA; PYRUVATE DEHYDROGENASE E1 ALPHA SUBUNIT; pyruvate dehydrogenase complex E1 alpha subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P52901", "url": "https://www.uniprot.org/uniprotkb/P52901" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEKGPIILEMDTYRYHGHSM", "down_seq": "DPGSTYRTRDEISGVRQERD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P52901", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52901" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser294" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P52901-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P52901-1.292.292", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVN4-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "Q9ZVN4-1", "length": 215, "uniprot_id": "DSP1_ARATH", "protein_name": "Inositol diphosphatase DSP1", "refseq_ac": "", "refseq_name": "", "gene_name": "DSP1; PFA-DSP1", "gene_names_uniprotkb": "DSP1; PFA-DSP1; AtPFA-DSP1; PTP135; T7A14.14; T7A14_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel phosphatase family, structurally related to dual-specificity phosphatases, that displays unique amino acid sequence and substrate specificity.", "journal": "Journal of molecular biology", "date": "2007-12-07", "authors": "Rom\u00e1-Mateo Carlos, R\u00edos Pablo, Tabernero Lydia, Attwood Teresa K, Pulido Rafael", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "17976645", "url": "https://glygen.org/publication/PubMed/17976645" } ] } ], "crossref": [ { "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17976645", "url": "https://glygen.org/publication/PubMed/17976645", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "PESNLQFLKSNGIRLFQFGI", "down_seq": "GNKEPFVNIPDHKIRMALKV", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Reduces phosphatase activity toward para-nitrophenyl phosphate 2-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "17976645", "url": "https://glygen.org/publication/PubMed/17976645" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "191", "end_pos": "191" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVN4-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q9ZVN4-1", "length": 215, "uniprot_id": "DSP1_ARATH", "protein_name": "Inositol diphosphatase DSP1", "refseq_ac": "", "refseq_name": "", "gene_name": "DSP1; PFA-DSP1", "gene_names_uniprotkb": "DSP1; PFA-DSP1; AtPFA-DSP1; PTP135; T7A14.14; T7A14_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A structural expos\u00e9 of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop.", "journal": "Nature communications", "date": "2022-04-25", "authors": "Wang Huanchen, Perera Lalith, Jork Nikolaus, Zong Guangning, Riley Andrew M, Potter Barry V L, Jessen Henning J, Shears Stephen B", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" } ] }, { "title": "Phylogenetic and genetic linkage between novel atypical dual-specificity phosphatases from non-metazoan organisms.", "journal": "Molecular genetics and genomics : MGG", "date": "2011-04", "authors": "Rom\u00e1-Mateo Carlos, Sacrist\u00e1n-Reviriego Almudena, Beresford Nicola J, Caparr\u00f3s-Mart\u00edn Jos\u00e9 Antonio, Culi\u00e1\u00f1ez-Maci\u00e0 Francisco A, Mart\u00edn Humberto, Molina Mar\u00eda, Tabernero Lydia, Pulido Rafael", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] }, { "title": "Arabidopsis PFA-DSP-Type Phosphohydrolases Target Specific Inositol Pyrophosphate Messengers.", "journal": "Biochemistry", "date": "2022-06-21", "authors": "Gaugler Philipp, Schneider Robin, Liu Guizhen, Qiu Danye, Weber Jonathan, Schmid Jochen, Jork Nikolaus, H\u00e4ner Markus, Ritter Kevin, Fern\u00e1ndez-Rebollo Nicol\u00e1s, Giehl Ricardo F H, Trung Minh Nguyen, Yadav Ranjana, Fiedler Dorothea, Gaugler Verena, Jessen Henning J, Schaaf Gabriel, Laha Debabrata", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "35640071", "url": "https://glygen.org/publication/PubMed/35640071" } ] } ], "crossref": [ { "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566", "database": "PubMed", "categories": [ "Other" ] }, { "id": "35640071", "url": "https://glygen.org/publication/PubMed/35640071", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "KIRMALKVLLDEKNHPVLIH", "down_seq": "KRGKHRTGCLVGCLRKLQKW", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" }, { "database": "PubMed", "id": "35640071", "url": "https://glygen.org/publication/PubMed/35640071" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "191", "end_pos": "191" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9ZVN4-1.155.155", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZVN4-1.157.157", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVN4-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q9ZVN4-1", "length": 215, "uniprot_id": "DSP1_ARATH", "protein_name": "Inositol diphosphatase DSP1", "refseq_ac": "", "refseq_name": "", "gene_name": "DSP1; PFA-DSP1", "gene_names_uniprotkb": "DSP1; PFA-DSP1; AtPFA-DSP1; PTP135; T7A14.14; T7A14_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A structural expos\u00e9 of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop.", "journal": "Nature communications", "date": "2022-04-25", "authors": "Wang Huanchen, Perera Lalith, Jork Nikolaus, Zong Guangning, Riley Andrew M, Potter Barry V L, Jessen Henning J, Shears Stephen B", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" } ] }, { "title": "Phylogenetic and genetic linkage between novel atypical dual-specificity phosphatases from non-metazoan organisms.", "journal": "Molecular genetics and genomics : MGG", "date": "2011-04", "authors": "Rom\u00e1-Mateo Carlos, Sacrist\u00e1n-Reviriego Almudena, Beresford Nicola J, Caparr\u00f3s-Mart\u00edn Jos\u00e9 Antonio, Culi\u00e1\u00f1ez-Maci\u00e0 Francisco A, Mart\u00edn Humberto, Molina Mar\u00eda, Tabernero Lydia, Pulido Rafael", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] } ], "crossref": [ { "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LKVLLDEKNHPVLIHCKRGK", "down_seq": "RTGCLVGCLRKLQKWCLTSI", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "D", "comment": "Abolishes phosphatase activity toward the phosphoinositides PI(3,4,5)P3 and PI(3,5)P2; reduces phosphatase activity toward para-nitrophenyl phosphate and O-methylfluorescein phosphate. Strongly reduces activity against 5-InsP(7).", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] }, { "sequence_org": "H", "sequence_mut": "E", "comment": "Abolishes phosphatase activity toward the phosphoinositides PI(3,4,5)P3 and PI(3,5)P2; reduces phosphatase activity toward para-nitrophenyl phosphate and O-methylfluorescein phosphate. Strongly reduces activity against 5-InsP(7).", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] }, { "sequence_org": "H", "sequence_mut": "G", "comment": "Abolishes phosphatase activity toward the phosphoinositides PI(3,4,5)P3 and PI(3,5)P2; reduces phosphatase activity toward para-nitrophenyl phosphate and O-methylfluorescein phosphate. Strongly reduces activity against 5-InsP(7).", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] }, { "sequence_org": "H", "sequence_mut": "L", "comment": "Abolishes phosphatase activity toward the phosphoinositides PI(3,4,5)P3 and PI(3,5)P2; reduces phosphatase activity toward para-nitrophenyl phosphate and O-methylfluorescein phosphate. Strongly reduces activity against 5-InsP(7).", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] }, { "sequence_org": "H", "sequence_mut": "S", "comment": "Abolishes phosphatase activity toward the phosphoinositides PI(3,4,5)P3 and PI(3,5)P2; reduces phosphatase activity toward para-nitrophenyl phosphate and O-methylfluorescein phosphate. Strongly reduces activity against 5-InsP(7).", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "21409566", "url": "https://glygen.org/publication/PubMed/21409566" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "191", "end_pos": "191" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9ZVN4-1.150.150", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVN4-1.157.157", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVN4-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "Q9ZVN4-1", "length": 215, "uniprot_id": "DSP1_ARATH", "protein_name": "Inositol diphosphatase DSP1", "refseq_ac": "", "refseq_name": "", "gene_name": "DSP1; PFA-DSP1", "gene_names_uniprotkb": "DSP1; PFA-DSP1; AtPFA-DSP1; PTP135; T7A14.14; T7A14_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A structural expos\u00e9 of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop.", "journal": "Nature communications", "date": "2022-04-25", "authors": "Wang Huanchen, Perera Lalith, Jork Nikolaus, Zong Guangning, Riley Andrew M, Potter Barry V L, Jessen Henning J, Shears Stephen B", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" } ] } ], "crossref": [ { "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VLLDEKNHPVLIHCKRGKHR", "down_seq": "GCLVGCLRKLQKWCLTSIFD", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Strongly reduces activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "191", "end_pos": "191" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9ZVN4-1.150.150", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVN4-1.155.155", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVN4-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q9ZVN4-1", "length": 215, "uniprot_id": "DSP1_ARATH", "protein_name": "Inositol diphosphatase DSP1", "refseq_ac": "", "refseq_name": "", "gene_name": "DSP1; PFA-DSP1", "gene_names_uniprotkb": "DSP1; PFA-DSP1; AtPFA-DSP1; PTP135; T7A14.14; T7A14_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A structural expos\u00e9 of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop.", "journal": "Nature communications", "date": "2022-04-25", "authors": "Wang Huanchen, Perera Lalith, Jork Nikolaus, Zong Guangning, Riley Andrew M, Potter Barry V L, Jessen Henning J, Shears Stephen B", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" } ] }, { "title": "A novel phosphatase family, structurally related to dual-specificity phosphatases, that displays unique amino acid sequence and substrate specificity.", "journal": "Journal of molecular biology", "date": "2007-12-07", "authors": "Rom\u00e1-Mateo Carlos, R\u00edos Pablo, Tabernero Lydia, Attwood Teresa K, Pulido Rafael", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" } ], "reference": [ { "type": "PubMed", "id": "17976645", "url": "https://glygen.org/publication/PubMed/17976645" } ] } ], "crossref": [ { "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17976645", "url": "https://glygen.org/publication/PubMed/17976645", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "CLTSIFDEYQRFAAAKARVS", "down_seq": "QRFMEIFDVSSFSHIPMSFS", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Strongly reduces activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVN4", "url": "https://www.uniprot.org/uniprotkb/Q9ZVN4" }, { "database": "PubMed", "id": "35468885", "url": "https://glygen.org/publication/PubMed/35468885" }, { "database": "PubMed", "id": "17976645", "url": "https://glygen.org/publication/PubMed/17976645" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "191", "end_pos": "191" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PP29-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLDSEFNAKLSDFGLAKVGP", "down_seq": "GDRTHVSTQVMGTQGYAAPE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr242", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q5PP29-1.249.249", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5PP29-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q5PP29-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.167.167", "start_pos": 167, "end_pos": 167, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MNLVKLIGYCSKGDHIRLLV", "down_seq": "EYMPKGSLENHLFRRGAEPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Tyr167" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AARGLAFLHEAQVIYRDFKA", "down_seq": "NILLDSEFNAKLSDFGLAKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Ser219" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLSDFGLAKVGPTGDRTHV", "down_seq": "TQVMGTQGYAAPEYVATGRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Ser249" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q5PP29-1.242.242", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q5PP29-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5PP29-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q5PP29-1.263.263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.250.250", "start_pos": 250, "end_pos": 250, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSDFGLAKVGPTGDRTHVS", "down_seq": "QVMGTQGYAAPEYVATGRIT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Thr250" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5PP29-1.242.242", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q5PP29-1.249.249", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q5PP29-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q5PP29-1.263.263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKVGPTGDRTHVSTQVMG", "down_seq": "QGYAAPEYVATGRITAKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Thr255" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q5PP29-1.242.242", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q5PP29-1.249.249", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q5PP29-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5PP29-1.263.263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDRTHVSTQVMGTQGYAAPE", "down_seq": "VATGRITAKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Tyr263" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q5PP29-1.249.249", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q5PP29-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q5PP29-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRPKMSDVLSTLEELEMTLK", "down_seq": "GSISNSVMKLTSSSSSFTAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5PP29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP29" } ], "site_lbl": "Ser371" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PP29-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q5PP29-1", "length": 412, "uniprot_id": "PBL4_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL4", "refseq_ac": "NP_174019", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL4", "gene_names_uniprotkb": "PBL4; T2P11.16; T7N9.2", "gene_names_refseq": "T2P11.16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLQTPRSEGELLASPTLKAF", "down_seq": "FNELKTATRNFRPDSVIGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5PP29", "url": "https://www.uniprot.org/uniprotkb/Q5PP29" } ], "site_lbl": "Thr72" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39019-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MASSGLGNGVGTSRSAKGLK", "down_seq": "SSSSVDWLTRDLAETRIRDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q39019-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39019-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLKICDFGSAKVLVKGEPNV", "down_seq": "YICSRYYRAPELIFGASEYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q39019-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39019-1.246.246", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39019-1.248.248", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LKICDFGSAKVLVKGEPNVS", "down_seq": "ICSRYYRAPELIFGASEYTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" }, { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Tyr243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q39019-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39019-1.246.246", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39019-1.248.248", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CDFGSAKVLVKGEPNVSYIC", "down_seq": "RYYRAPELIFGASEYTTAID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser246" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q39019-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39019-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39019-1.248.248", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "FGSAKVLVKGEPNVSYICSR", "down_seq": "YRAPELIFGASEYTTAIDIW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Tyr248" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q39019-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39019-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39019-1.246.246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGLGNGVGTSRSAKGLKSSS", "down_seq": "SVDWLTRDLAETRIRDKVET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser24" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q39019-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39019-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q39019-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLGNGVGTSRSAKGLKSSSS", "down_seq": "VDWLTRDLAETRIRDKVETD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q39019-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39019-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q39019-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSVDWLTRDLAETRIRDKVE", "down_seq": "DDERDSEPDIIDGAGAEPGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q39019-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q39019-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39019-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39019-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q39019-1", "length": 421, "uniprot_id": "KSG10_ARATH", "protein_name": "Shaggy-related protein kinase kappa", "refseq_ac": "NP_001031013", "refseq_name": "shaggy-like protein kinase 41", "gene_name": "ASK10; SK41", "gene_names_uniprotkb": "ASK10; SK41; ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; shaggy-like protein kinase 41", "gene_names_refseq": "ATSK41; AtHIR1; F21M12.23; F21M12_23; HIR1; SK41; hypersensitive induced reaction 1; shaggy-like protein kinase 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39019", "url": "https://www.uniprot.org/uniprotkb/Q39019" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRDLAETRIRDKVETDDERD", "down_seq": "EPDIIDGAGAEPGHVIRTTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39019", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser50" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q39019-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V399-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "Q4V399-1", "length": 433, "uniprot_id": "RSGA1_ARATH", "protein_name": "Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial", "refseq_ac": "NP_176911", "refseq_name": "Minichromosome maintenance (MCM2/3/5) family protein", "gene_name": "EMB1688; rsgA", "gene_names_uniprotkb": "EMB1688; rsgA; EMB1688; T1F15.10; T1F15_10; emb1688; embryo defective 1688", "gene_names_refseq": "T1F15.10; T1F15_10; emb1688; embryo defective 1688", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V399", "url": "https://www.uniprot.org/uniprotkb/Q4V399" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q4V399", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V399" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q4V399", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V399" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q4V399", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V399" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q4V399", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V399", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATAQANFMRVIVQDVANSVT", "down_seq": "DDDNDSSKTGVELLCVVRAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4V399", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V399" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser57" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2UVJ5-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q2UVJ5-1", "length": 975, "uniprot_id": "CCC1_ARATH", "protein_name": "Cation-chloride cotransporter 1", "refseq_ac": "NP_174333", "refseq_name": "cation-chloride co-transporter 1", "gene_name": "CCC1", "gene_names_uniprotkb": "CCC1; ATCCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5", "gene_names_refseq": "ATCCC1; CCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5; cation-chloride co-transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ETFLKAFPAAGIFRETITKV", "down_seq": "GTAVSESIQSPNSHDLQVYG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn256", "evidence": [ { "id": "Q2UVJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "911", "end_pos": "911" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2UVJ5-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "Q2UVJ5-1", "length": 975, "uniprot_id": "CCC1_ARATH", "protein_name": "Cation-chloride cotransporter 1", "refseq_ac": "NP_174333", "refseq_name": "cation-chloride co-transporter 1", "gene_name": "CCC1", "gene_names_uniprotkb": "CCC1; ATCCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5", "gene_names_refseq": "ATCCC1; CCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5; cation-chloride co-transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSLVNILGLKSMTGEQIQAP", "down_seq": "SPRDGEDISITQGHPKPPAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser110" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "911", "end_pos": "911" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q2UVJ5-1.111.111", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2UVJ5-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q2UVJ5-1", "length": 975, "uniprot_id": "CCC1_ARATH", "protein_name": "Cation-chloride cotransporter 1", "refseq_ac": "NP_174333", "refseq_name": "cation-chloride co-transporter 1", "gene_name": "CCC1", "gene_names_uniprotkb": "CCC1; ATCCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5", "gene_names_refseq": "ATCCC1; CCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5; cation-chloride co-transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" }, { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" }, { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLVNILGLKSMTGEQIQAPS", "down_seq": "PRDGEDISITQGHPKPPALK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser111" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "911", "end_pos": "911" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q2UVJ5-1.110.110", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2UVJ5-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "Q2UVJ5-1", "length": 975, "uniprot_id": "CCC1_ARATH", "protein_name": "Cation-chloride cotransporter 1", "refseq_ac": "NP_174333", "refseq_name": "cation-chloride co-transporter 1", "gene_name": "CCC1", "gene_names_uniprotkb": "CCC1; ATCCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5", "gene_names_refseq": "ATCCC1; CCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5; cation-chloride co-transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MD", "down_seq": "GDIEEAGGNGEEEFRSGPRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "911", "end_pos": "911" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2UVJ5-1.911.911", "start_pos": 911, "end_pos": 911, "uniprot_canonical_ac": "Q2UVJ5-1", "length": 975, "uniprot_id": "CCC1_ARATH", "protein_name": "Cation-chloride cotransporter 1", "refseq_ac": "NP_174333", "refseq_name": "cation-chloride co-transporter 1", "gene_name": "CCC1", "gene_names_uniprotkb": "CCC1; ATCCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5", "gene_names_refseq": "ATCCC1; CCC1; F26G16.4; F26G16_4; HAP5; HAPLESS 5; cation-chloride co-transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2UVJ5", "url": "https://www.uniprot.org/uniprotkb/Q2UVJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PLLANGKPMVVNEQQVEKFL", "down_seq": "TMLKLNSTILSYSRMAAVVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2UVJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2UVJ5" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Tyr911" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "911", "end_pos": "911" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XF79-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLDVDFNAKLSDFGLAKAGP", "down_seq": "GDRTHVTTQVIGTQGYAAPE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr242", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q5XF79-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q5XF79-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF79-1.167.167", "start_pos": 167, "end_pos": 167, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HMNLVKLIGYCLEGEKRLLV", "down_seq": "EYMPKGSLENHLFRRGAEPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "site_lbl": "Tyr167" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF79-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AARGLSFLHEAKVIYRDFKA", "down_seq": "NILLDVDFNAKLSDFGLAKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "site_lbl": "Ser219" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF79-1.250.250", "start_pos": 250, "end_pos": 250, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSDFGLAKAGPTGDRTHVT", "down_seq": "QVIGTQGYAAPEYIATGRLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "site_lbl": "Thr250" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5XF79-1.242.242", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q5XF79-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q5XF79-1.263.263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF79-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKAGPTGDRTHVTTQVIG", "down_seq": "QGYAAPEYIATGRLTSKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "site_lbl": "Thr255" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q5XF79-1.242.242", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q5XF79-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5XF79-1.263.263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF79-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDRTHVTTQVIGTQGYAAPE", "down_seq": "IATGRLTSKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "site_lbl": "Tyr263" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q5XF79-1.250.250", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q5XF79-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF79-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IALRCLNTEPKLRPDMADVL", "down_seq": "TLQQLETSSKKMGSTQNIVM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser360" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q5XF79-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q5XF79-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XF79-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TEPKLRPDMADVLSTLQQLE", "down_seq": "SSKKMGSTQNIVMSPSSHMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr367" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q5XF79-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q5XF79-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XF79-1.369.369", "start_pos": 369, "end_pos": 369, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKLRPDMADVLSTLQQLETS", "down_seq": "KKMGSTQNIVMSPSSHMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XF79", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF79" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser369" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q5XF79-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q5XF79-1.367.367", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XF79-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q5XF79-1", "length": 387, "uniprot_id": "PBL18_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL18", "refseq_ac": "NP_001323365", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL18", "gene_names_uniprotkb": "PBL18; T6C23.1; T6C23_1", "gene_names_refseq": "T6C23.1; T6C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SNLTPRSEGELLPSPTLKAF", "down_seq": "FNELKTATRNFKPNSMIGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5XF79", "url": "https://www.uniprot.org/uniprotkb/Q5XF79" } ], "site_lbl": "Thr73" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93757-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "P93757-1", "length": 387, "uniprot_id": "GMK1_ARATH", "protein_name": "Guanylate kinase 1", "refseq_ac": "NP_001323632", "refseq_name": "guanylate kinase 1", "gene_name": "GK-1", "gene_names_uniprotkb": "GK-1; AGK1; T11A7.23; guanylate kinase 1", "gene_names_refseq": "AGK1; GK-1; T11A7.23; guanylate kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93757", "url": "https://www.uniprot.org/uniprotkb/P93757" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93757", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93757" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93757", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93757", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKEFPSMFGFSVSHTTRSPR", "down_seq": "MEMDGVHYHFADKKVMEKEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93757", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93757" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1PEX8-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q1PEX8-1", "length": 75, "uniprot_id": "CSTM5_ARATH", "protein_name": "Protein CYSTEINE-RICH TRANSMEMBRANE MODULE 5", "refseq_ac": "NP_180779", "refseq_name": "cysteine-rich/transmembrane domain A-like protein", "gene_name": "ATHCYSTM5; CYSTM5", "gene_names_uniprotkb": "ATHCYSTM5; CYSTM5; F22D22.5; F22D22_5", "gene_names_refseq": "F22D22.5; F22D22_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEX8", "url": "https://www.uniprot.org/uniprotkb/Q1PEX8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSQYSQNQYAGAYP", "down_seq": "PPVSTGPYVAPPPLGYPTND", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr15", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZV43-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q9ZV43-1", "length": 1187, "uniprot_id": "CHR8_ARATH", "protein_name": "Protein CHROMATIN REMODELING 8", "refseq_ac": "NP_001318246", "refseq_name": "chromatin remodeling 8", "gene_name": "CHR8", "gene_names_uniprotkb": "CHR8; CSB; ERCC6; MSF3.14; MSF3_14; RAD26; RAD54; chromatin remodeling 8", "gene_names_refseq": "CHR8; ERCC6; MSF3.14; MSF3_14; RAD26; chromatin remodeling 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZV43", "url": "https://www.uniprot.org/uniprotkb/Q9ZV43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZV43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV43" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZV43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV43", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLEPPTAPFRRLRKLYKTPN", "down_seq": "PDNEAKKRKAGKKSKKTRPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZV43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV43" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser299" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "299", "end_pos": "299" }, { "start_pos": "866", "end_pos": "866" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZV43-1.866.866", "start_pos": 866, "end_pos": 866, "uniprot_canonical_ac": "Q9ZV43-1", "length": 1187, "uniprot_id": "CHR8_ARATH", "protein_name": "Protein CHROMATIN REMODELING 8", "refseq_ac": "NP_001318246", "refseq_name": "chromatin remodeling 8", "gene_name": "CHR8", "gene_names_uniprotkb": "CHR8; CSB; ERCC6; MSF3.14; MSF3_14; RAD26; RAD54; chromatin remodeling 8", "gene_names_refseq": "CHR8; ERCC6; MSF3.14; MSF3_14; RAD26; chromatin remodeling 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZV43", "url": "https://www.uniprot.org/uniprotkb/Q9ZV43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZV43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV43", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TVYRLITRGTIEEKVYHRQI", "down_seq": "KHFLTNKILKNPQQRRFFKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZV43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV43" } ], "site_lbl": "Tyr866" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "299", "end_pos": "299" }, { "start_pos": "866", "end_pos": "866" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3EBY6-1.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "Q3EBY6-1", "length": 416, "uniprot_id": "MCAC2_ARATH", "protein_name": "Protein MID1-COMPLEMENTING ACTIVITY 2", "refseq_ac": "NP_001031366", "refseq_name": "PLAC8 family protein", "gene_name": "MCA2", "gene_names_uniprotkb": "MCA2; T17A5.4; T17A5_4; mid1-complementing activity 2", "gene_names_refseq": "MCA2; T17A5.4; T17A5_4; mid1-complementing activity 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EBY6", "url": "https://www.uniprot.org/uniprotkb/Q3EBY6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEIHRASYGTEKSNKEMSPP", "down_seq": "PQFMEE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr410", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "410", "end_pos": "410" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39242-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q39242-1", "length": 383, "uniprot_id": "TRXB2_ARATH", "protein_name": "Thioredoxin reductase 2", "refseq_ac": "NP_179334", "refseq_name": "NADPH-dependent thioredoxin reductase A", "gene_name": "NTR2; NTRA", "gene_names_uniprotkb": "NTR2; NTRA; ATNTRA; F5J6.18; F5J6_18; NTR2; NTRA; THIOREDOXIN REDUCTASE A", "gene_names_refseq": "ATNTRA; F5J6.18; F5J6_18; NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2; NADPH-dependent thioredoxin reductase A; NTR2; NTRA; THIOREDOXIN REDUCTASE A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39242", "url": "https://www.uniprot.org/uniprotkb/Q39242" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YIIHRRDTFRASKIMQQRAL", "down_seq": "NPKIEVIWNSAVVEAYGDEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser256" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "256", "end_pos": "256" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "382", "end_pos": "382" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39242-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "Q39242-1", "length": 383, "uniprot_id": "TRXB2_ARATH", "protein_name": "Thioredoxin reductase 2", "refseq_ac": "NP_179334", "refseq_name": "NADPH-dependent thioredoxin reductase A", "gene_name": "NTR2; NTRA", "gene_names_uniprotkb": "NTR2; NTRA; ATNTRA; F5J6.18; F5J6_18; NTR2; NTRA; THIOREDOXIN REDUCTASE A", "gene_names_refseq": "ATNTRA; F5J6.18; F5J6_18; NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2; NADPH-dependent thioredoxin reductase A; NTR2; NTRA; THIOREDOXIN REDUCTASE A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39242", "url": "https://www.uniprot.org/uniprotkb/Q39242" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAGTGCMAALDAEHYLQEIG", "down_seq": "QEGKSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser377" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "256", "end_pos": "256" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "382", "end_pos": "382" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q39242-1.382.382", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39242-1.382.382", "start_pos": 382, "end_pos": 382, "uniprot_canonical_ac": "Q39242-1", "length": 383, "uniprot_id": "TRXB2_ARATH", "protein_name": "Thioredoxin reductase 2", "refseq_ac": "NP_179334", "refseq_name": "NADPH-dependent thioredoxin reductase A", "gene_name": "NTR2; NTRA", "gene_names_uniprotkb": "NTR2; NTRA; ATNTRA; F5J6.18; F5J6_18; NTR2; NTRA; THIOREDOXIN REDUCTASE A", "gene_names_refseq": "ATNTRA; F5J6.18; F5J6_18; NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2; NADPH-dependent thioredoxin reductase A; NTR2; NTRA; THIOREDOXIN REDUCTASE A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39242", "url": "https://www.uniprot.org/uniprotkb/Q39242" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CMAALDAEHYLQEIGSQEGK", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39242" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser382" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "256", "end_pos": "256" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "382", "end_pos": "382" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q39242-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR66-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "Q0WR66-1", "length": 793, "uniprot_id": "ASY3_ARATH", "protein_name": "Meiosis-specific protein ASY3", "refseq_ac": "NP_182221", "refseq_name": "asynaptic protein", "gene_name": "ASY3", "gene_names_uniprotkb": "ASY3; ASYNAPTIC 3; AtASY3; F14M4.19", "gene_names_refseq": "ASY3; ASYNAPTIC 3; Arabidopsis thaliana ASYNAPTIC 3; AtASY3; F14M4.19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR66", "url": "https://www.uniprot.org/uniprotkb/Q0WR66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AHSRKKDEADWSRKEASKSN", "down_seq": "PPRSESTETGKRSSSSDKKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" } ], "site_lbl": "Thr358" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q0WR66-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WR66-1.367.367", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WR66-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "Q0WR66-1", "length": 793, "uniprot_id": "ASY3_ARATH", "protein_name": "Meiosis-specific protein ASY3", "refseq_ac": "NP_182221", "refseq_name": "asynaptic protein", "gene_name": "ASY3", "gene_names_uniprotkb": "ASY3; ASYNAPTIC 3; AtASY3; F14M4.19", "gene_names_refseq": "ASY3; ASYNAPTIC 3; Arabidopsis thaliana ASYNAPTIC 3; AtASY3; F14M4.19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR66", "url": "https://www.uniprot.org/uniprotkb/Q0WR66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EADWSRKEASKSNTPPRSES", "down_seq": "ETGKRSSSSDKKGSSHDLHP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr365" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q0WR66-1.358.358", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WR66-1.367.367", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR66-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "Q0WR66-1", "length": 793, "uniprot_id": "ASY3_ARATH", "protein_name": "Meiosis-specific protein ASY3", "refseq_ac": "NP_182221", "refseq_name": "asynaptic protein", "gene_name": "ASY3", "gene_names_uniprotkb": "ASY3; ASYNAPTIC 3; AtASY3; F14M4.19", "gene_names_refseq": "ASY3; ASYNAPTIC 3; Arabidopsis thaliana ASYNAPTIC 3; AtASY3; F14M4.19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR66", "url": "https://www.uniprot.org/uniprotkb/Q0WR66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DWSRKEASKSNTPPRSESTE", "down_seq": "GKRSSSSDKKGSSHDLHPQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr367" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q0WR66-1.358.358", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WR66-1.365.365", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR66-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q0WR66-1", "length": 793, "uniprot_id": "ASY3_ARATH", "protein_name": "Meiosis-specific protein ASY3", "refseq_ac": "NP_182221", "refseq_name": "asynaptic protein", "gene_name": "ASY3", "gene_names_uniprotkb": "ASY3; ASYNAPTIC 3; AtASY3; F14M4.19", "gene_names_refseq": "ASY3; ASYNAPTIC 3; Arabidopsis thaliana ASYNAPTIC 3; AtASY3; F14M4.19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR66", "url": "https://www.uniprot.org/uniprotkb/Q0WR66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QANKKEKSDLAAKQRNSAQV", "down_seq": "GHVTSPWRSPRSSHRKLGTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q0WR66-1.83.83", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR66-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "Q0WR66-1", "length": 793, "uniprot_id": "ASY3_ARATH", "protein_name": "Meiosis-specific protein ASY3", "refseq_ac": "NP_182221", "refseq_name": "asynaptic protein", "gene_name": "ASY3", "gene_names_uniprotkb": "ASY3; ASYNAPTIC 3; AtASY3; F14M4.19", "gene_names_refseq": "ASY3; ASYNAPTIC 3; Arabidopsis thaliana ASYNAPTIC 3; AtASY3; F14M4.19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR66", "url": "https://www.uniprot.org/uniprotkb/Q0WR66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KEKSDLAAKQRNSAQVTGHV", "down_seq": "SPWRSPRSSHRKLGTLESVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR66", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR66" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr83" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WR66-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XEZ1-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q5XEZ1-1", "length": 346, "uniprot_id": "B3GT9_ARATH", "protein_name": "Hydroxyproline O-galactosyltransferase HPGT3", "refseq_ac": "NP_180102", "refseq_name": "Galactosyltransferase family protein", "gene_name": "HPGT3", "gene_names_uniprotkb": "HPGT3; B3GALT9; T22F11.11; T22F11_11", "gene_names_refseq": "T22F11.11; T22F11_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XEZ1", "url": "https://www.uniprot.org/uniprotkb/Q5XEZ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XEZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XEZ1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGRLWQDAENRVVLNNILKK", "down_seq": "YDQKPKVLTVDDKLMVLGCK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XEZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XEZ1" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q5XEZ1-1.65.65", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q5XEZ1-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XEZ1-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q5XEZ1-1", "length": 346, "uniprot_id": "B3GT9_ARATH", "protein_name": "Hydroxyproline O-galactosyltransferase HPGT3", "refseq_ac": "NP_180102", "refseq_name": "Galactosyltransferase family protein", "gene_name": "HPGT3", "gene_names_uniprotkb": "HPGT3; B3GALT9; T22F11.11; T22F11_11", "gene_names_refseq": "T22F11.11; T22F11_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XEZ1", "url": "https://www.uniprot.org/uniprotkb/Q5XEZ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XEZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XEZ1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GRLWQDAENRVVLNNILKKS", "down_seq": "DQKPKVLTVDDKLMVLGCKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XEZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XEZ1" } ], "site_lbl": "Tyr65" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q5XEZ1-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5XEZ1-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XEZ1-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q5XEZ1-1", "length": 346, "uniprot_id": "B3GT9_ARATH", "protein_name": "Hydroxyproline O-galactosyltransferase HPGT3", "refseq_ac": "NP_180102", "refseq_name": "Galactosyltransferase family protein", "gene_name": "HPGT3", "gene_names_uniprotkb": "HPGT3; B3GALT9; T22F11.11; T22F11_11", "gene_names_refseq": "T22F11.11; T22F11_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XEZ1", "url": "https://www.uniprot.org/uniprotkb/Q5XEZ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XEZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XEZ1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NRVVLNNILKKSYDQKPKVL", "down_seq": "VDDKLMVLGCKDLERRIVET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XEZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XEZ1" } ], "site_lbl": "Thr73" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q5XEZ1-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q5XEZ1-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56Y01-1.258.258", "start_pos": 258, "end_pos": 258, "uniprot_canonical_ac": "Q56Y01-1", "length": 289, "uniprot_id": "IPCS3_ARATH", "protein_name": "Phosphatidylinositol:ceramide inositolphosphotransferase 3", "refseq_ac": "", "refseq_name": "", "gene_name": "ATIPCS3; IPCS3", "gene_names_uniprotkb": "ATIPCS3; IPCS3; AtIPCS3; ERHL1; F16P2.49", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56Y01", "url": "https://www.uniprot.org/uniprotkb/Q56Y01" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MFYVDSKLPEMAERSSGPSP", "down_seq": "PLLPLSTKDSKNKSKEDHQR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr258", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "258", "end_pos": "258" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEY6-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "Q1PEY6-1", "length": 156, "uniprot_id": "EPFL6_ARATH", "protein_name": "EPIDERMAL PATTERNING FACTOR-like protein 6", "refseq_ac": "NP_001189638", "refseq_name": "allergen-like protein", "gene_name": "CHAL; EPFL6", "gene_names_uniprotkb": "CHAL; EPFL6; CHALLAH; CHAL; EPF1-like 6; EPFL6; T9D9.18; T9D9_18", "gene_names_refseq": "CHALLAH; CHAL; EPF1-like 6; EPFL6; T9D9.18; T9D9_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEY6", "url": "https://www.uniprot.org/uniprotkb/Q1PEY6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Regional specification of stomatal production by the putative ligand CHALLAH.", "journal": "Development (Cambridge, England)", "date": "2010-02", "authors": "Abrash Emily B, Bergmann Dominique C", "evidence": [ { "database": "UniProtKB", "id": "Q1PEY6", "url": "https://www.uniprot.org/uniprotkb/Q1PEY6" } ], "reference": [ { "type": "PubMed", "id": "20056678", "url": "https://glygen.org/publication/PubMed/20056678" } ] } ], "crossref": [ { "id": "Q1PEY6", "url": "https://www.uniprot.org/uniprotkb/Q1PEY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20056678", "url": "https://glygen.org/publication/PubMed/20056678", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "ILRGLGSSPPRCSSKCGRCT", "down_seq": "CKPVHVPVPPGTPVTAEYYP", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In chal-1; derepress stomatal production in a specific subset of tissues.", "evidence": [ { "database": "UniProtKB", "id": "Q1PEY6", "url": "https://www.uniprot.org/uniprotkb/Q1PEY6" }, { "database": "PubMed", "id": "20056678", "url": "https://glygen.org/publication/PubMed/20056678" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVJ6-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ASLNKDADKTTKKWLTRVFV", "down_seq": "RADHSDEMNEIKEEYNNLYG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr272", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9ZVJ6-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZVJ6-1.287.287", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVJ6-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VKKALKKGEEAYNLIVEVSC", "down_seq": "RSAEDLLGARKAYHSLFDQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "site_lbl": "Thr115" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVJ6-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DIASHVHGPQRKLLVGLVSA", "down_seq": "RYEGNKVKDDSAKSDAKILA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "site_lbl": "Tyr159" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVJ6-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" }, { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9ZVJ6", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9ZVJ6*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EKDEVVRILTTRSKLHLQHL", "down_seq": "KHFNEIKGSDLLGGVSKSSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9ZVJ6", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9ZVJ6*" }, { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" } ], "site_lbl": "Tyr211" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVJ6-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" }, { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9ZVJ6", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9ZVJ6*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DADKTTKKWLTRVFVTRADH", "down_seq": "DEMNEIKEEYNNLYGETLAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9ZVJ6", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9ZVJ6*" }, { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" } ], "site_lbl": "Ser277" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9ZVJ6-1.272.272", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZVJ6-1.287.287", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVJ6-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TRVFVTRADHSDEMNEIKEE", "down_seq": "NNLYGETLAQRIQEKIKGNY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "site_lbl": "Tyr287" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9ZVJ6-1.272.272", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9ZVJ6-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVJ6-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALISTLGKSQKEHRKLFRKA", "down_seq": "KSFFVEDEERAFEKCHDHFV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZVJ6-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVJ6-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q9ZVJ6-1", "length": 319, "uniprot_id": "ANXD4_ARATH", "protein_name": "Annexin D4", "refseq_ac": "NP_181409", "refseq_name": "annexin 4", "gene_name": "ANN4; ANNAT4", "gene_names_uniprotkb": "ANN4; ANNAT4; ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "gene_names_refseq": "ANNAT4; ANNEXIN 4; AtANN4; T6A23.5; T6A23_5; annexin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVJ6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISTLGKSQKEHRKLFRKASK", "down_seq": "FFVEDEERAFEKCHDHFVRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVJ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVJ6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "272", "end_pos": "272" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZVJ6-1.46.46", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93732-1.247.247", "start_pos": 247, "end_pos": 247, "uniprot_canonical_ac": "P93732-1", "length": 380, "uniprot_id": "PIP_ARATH", "protein_name": "Proline iminopeptidase", "refseq_ac": "NP_001325175", "refseq_name": "proline iminopeptidase", "gene_name": "PIP", "gene_names_uniprotkb": "PIP; PROLINE IMINOPEPTIDASE; T1O16.15; proline iminopeptidase", "gene_names_refseq": "PIP; PROLINE IMINOPEPTIDASE; proline iminopeptidase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93732", "url": "https://www.uniprot.org/uniprotkb/P93732" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93732", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93732" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P93732", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93732", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LIPENERGSSLVDAYHKRLN", "down_seq": "DDLEIQYAAARAWTKWEMMT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93732", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93732" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser247" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V3B8-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q4V3B8-1", "length": 540, "uniprot_id": "SIPL3_ARATH", "protein_name": "Signal peptide peptidase-like 3", "refseq_ac": "NP_001318409", "refseq_name": "SIGNAL PEPTIDE PEPTIDASE-LIKE 3", "gene_name": "SPPL3", "gene_names_uniprotkb": "SPPL3; ATSPPL3; F14B2; MLF8", "gene_names_refseq": "ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3; ATSPPL3; SIGNAL PEPTIDE PEPTIDASE-LIKE 3; SPPL3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3B8", "url": "https://www.uniprot.org/uniprotkb/Q4V3B8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4V3B8", "url": "https://www.uniprot.org/uniprotkb/Q4V3B8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VINDKEDLDEMGCMEKDTSL", "down_seq": "VSIPVLMISKSSGDALNKSM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn155", "evidence": [ { "id": "Q4V3B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3B8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "172", "end_pos": "172" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q4V3B8-1.172.172", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4V3B8-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q4V3B8-1", "length": 540, "uniprot_id": "SIPL3_ARATH", "protein_name": "Signal peptide peptidase-like 3", "refseq_ac": "NP_001318409", "refseq_name": "SIGNAL PEPTIDE PEPTIDASE-LIKE 3", "gene_name": "SPPL3", "gene_names_uniprotkb": "SPPL3; ATSPPL3; F14B2; MLF8", "gene_names_refseq": "ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3; ATSPPL3; SIGNAL PEPTIDE PEPTIDASE-LIKE 3; SPPL3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3B8", "url": "https://www.uniprot.org/uniprotkb/Q4V3B8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4V3B8", "url": "https://www.uniprot.org/uniprotkb/Q4V3B8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TSLNVSIPVLMISKSSGDAL", "down_seq": "KSMVDNKNVELLLYAPKRPA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn172", "evidence": [ { "id": "Q4V3B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4V3B8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "172", "end_pos": "172" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q4V3B8-1.155.155", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5MK23-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q5MK23-1", "length": 228, "uniprot_id": "ARV2_ARATH", "protein_name": "Protein ARV 2", "refseq_ac": "NP_192060", "refseq_name": "Arv1-like protein", "gene_name": "ARV2", "gene_names_uniprotkb": "ARV2; F11O4.16; F11O4_16", "gene_names_refseq": "ARV2; F11O4.16; F11O4_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AYLLLDTYRSLLLRRTNDGS", "down_seq": "VSMSFLFESLEVLVNVLSAN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn107", "evidence": [ { "id": "Q5MK23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5MK23#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1", "end_pos": "35" }, { "start_pos": "1", "end_pos": "46" }, { "start_pos": "1", "end_pos": "56" }, { "start_pos": "1", "end_pos": "68" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5MK23-1.1.35", "start_pos": 1, "end_pos": 35, "uniprot_canonical_ac": "Q5MK23-1", "length": 228, "uniprot_id": "ARV2_ARATH", "protein_name": "Protein ARV 2", "refseq_ac": "NP_192060", "refseq_name": "Arv1-like protein", "gene_name": "ARV2", "gene_names_uniprotkb": "ARV2; F11O4.16; F11O4_16", "gene_names_refseq": "ARV2; F11O4.16; F11O4_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis thaliana expresses two functional isoforms of Arvp, a protein involved in the regulation of cellular lipid homeostasis.", "journal": "Biochimica et biophysica acta", "date": "2006-07", "authors": "For\u00e9s Oriol, Arr\u00f3 Montserrat, Pahissa Albert, Ferrero Sergi, Germann Melody, Stukey Joseph, McDonough Virginia, Nickels Joseph T, Campos Narciso, Ferrer Albert", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "reference": [ { "type": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "crossref": [ { "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENC", "start_aa": "M", "up_seq": "", "down_seq": "EEVADEYVECELLIIFIDLI", "mutagenesis": [ { "sequence_org": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENC", "sequence_mut": "", "comment": "Normal ability to complement arv1-disrupted yeast.", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" }, { "database": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1", "end_pos": "35" }, { "start_pos": "1", "end_pos": "46" }, { "start_pos": "1", "end_pos": "56" }, { "start_pos": "1", "end_pos": "68" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5MK23-1.1.46", "start_pos": 1, "end_pos": 46, "uniprot_canonical_ac": "Q5MK23-1", "length": 228, "uniprot_id": "ARV2_ARATH", "protein_name": "Protein ARV 2", "refseq_ac": "NP_192060", "refseq_name": "Arv1-like protein", "gene_name": "ARV2", "gene_names_uniprotkb": "ARV2; F11O4.16; F11O4_16", "gene_names_refseq": "ARV2; F11O4.16; F11O4_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis thaliana expresses two functional isoforms of Arvp, a protein involved in the regulation of cellular lipid homeostasis.", "journal": "Biochimica et biophysica acta", "date": "2006-07", "authors": "For\u00e9s Oriol, Arr\u00f3 Montserrat, Pahissa Albert, Ferrero Sergi, Germann Melody, Stukey Joseph, McDonough Virginia, Nickels Joseph T, Campos Narciso, Ferrer Albert", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "reference": [ { "type": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "crossref": [ { "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECE", "start_aa": "M", "up_seq": "", "down_seq": "LLIIFIDLILHKTKAYRHLL", "mutagenesis": [ { "sequence_org": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECE", "sequence_mut": "", "comment": "Impaired ability to complement arv1-disrupted yeast.", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" }, { "database": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1", "end_pos": "35" }, { "start_pos": "1", "end_pos": "46" }, { "start_pos": "1", "end_pos": "56" }, { "start_pos": "1", "end_pos": "68" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5MK23-1.1.56", "start_pos": 1, "end_pos": 56, "uniprot_canonical_ac": "Q5MK23-1", "length": 228, "uniprot_id": "ARV2_ARATH", "protein_name": "Protein ARV 2", "refseq_ac": "NP_192060", "refseq_name": "Arv1-like protein", "gene_name": "ARV2", "gene_names_uniprotkb": "ARV2; F11O4.16; F11O4_16", "gene_names_refseq": "ARV2; F11O4.16; F11O4_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis thaliana expresses two functional isoforms of Arvp, a protein involved in the regulation of cellular lipid homeostasis.", "journal": "Biochimica et biophysica acta", "date": "2006-07", "authors": "For\u00e9s Oriol, Arr\u00f3 Montserrat, Pahissa Albert, Ferrero Sergi, Germann Melody, Stukey Joseph, McDonough Virginia, Nickels Joseph T, Campos Narciso, Ferrer Albert", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "reference": [ { "type": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "crossref": [ { "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLIL", "start_aa": "M", "up_seq": "", "down_seq": "HKTKAYRHLLYNVVNQESAN", "mutagenesis": [ { "sequence_org": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLIL", "sequence_mut": "", "comment": "Impaired ability to complement arv1-disrupted yeast.", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" }, { "database": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1", "end_pos": "35" }, { "start_pos": "1", "end_pos": "46" }, { "start_pos": "1", "end_pos": "56" }, { "start_pos": "1", "end_pos": "68" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5MK23-1.1.68", "start_pos": 1, "end_pos": 68, "uniprot_canonical_ac": "Q5MK23-1", "length": 228, "uniprot_id": "ARV2_ARATH", "protein_name": "Protein ARV 2", "refseq_ac": "NP_192060", "refseq_name": "Arv1-like protein", "gene_name": "ARV2", "gene_names_uniprotkb": "ARV2; F11O4.16; F11O4_16", "gene_names_refseq": "ARV2; F11O4.16; F11O4_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis thaliana expresses two functional isoforms of Arvp, a protein involved in the regulation of cellular lipid homeostasis.", "journal": "Biochimica et biophysica acta", "date": "2006-07", "authors": "For\u00e9s Oriol, Arr\u00f3 Montserrat, Pahissa Albert, Ferrero Sergi, Germann Melody, Stukey Joseph, McDonough Virginia, Nickels Joseph T, Campos Narciso, Ferrer Albert", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" } ], "reference": [ { "type": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "crossref": [ { "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLILHKTKAYRHLLYN", "start_aa": "M", "up_seq": "", "down_seq": "VVNQESANVQHLLWKLVLAY", "mutagenesis": [ { "sequence_org": "MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLILHKTKAYRHLLYN", "sequence_mut": "", "comment": "Impaired ability to complement arv1-disrupted yeast.", "evidence": [ { "database": "UniProtKB", "id": "Q5MK23", "url": "https://www.uniprot.org/uniprotkb/Q5MK23" }, { "database": "PubMed", "id": "16725371", "url": "https://glygen.org/publication/PubMed/16725371" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1", "end_pos": "35" }, { "start_pos": "1", "end_pos": "46" }, { "start_pos": "1", "end_pos": "56" }, { "start_pos": "1", "end_pos": "68" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYZ9-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "Q9SYZ9-1", "length": 353, "uniprot_id": "TAF8_ARATH", "protein_name": "Transcription initiation factor TFIID subunit 8", "refseq_ac": "NP_567964", "refseq_name": "TBP-associated factor 8", "gene_name": "TAF8", "gene_names_uniprotkb": "TAF8; F10M10.110; F10M10_110; TBP-associated factor 8", "gene_names_refseq": "F10M10.110; F10M10_110; TAF8; TBP-associated factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYZ9", "url": "https://www.uniprot.org/uniprotkb/Q9SYZ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDMDGVKEEMRDDESELRSV", "down_seq": "SGEKVESLNRDGLSVIEAFA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser248" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "249", "end_pos": "249" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9SYZ9-1.249.249", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYZ9-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q9SYZ9-1", "length": 353, "uniprot_id": "TAF8_ARATH", "protein_name": "Transcription initiation factor TFIID subunit 8", "refseq_ac": "NP_567964", "refseq_name": "TBP-associated factor 8", "gene_name": "TAF8", "gene_names_uniprotkb": "TAF8; F10M10.110; F10M10_110; TBP-associated factor 8", "gene_names_refseq": "F10M10.110; F10M10_110; TAF8; TBP-associated factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYZ9", "url": "https://www.uniprot.org/uniprotkb/Q9SYZ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DMDGVKEEMRDDESELRSVS", "down_seq": "GEKVESLNRDGLSVIEAFAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SYZ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYZ9" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser249" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "249", "end_pos": "249" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9SYZ9-1.248.248", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38853-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q38853-1", "length": 182, "uniprot_id": "STR15_ARATH", "protein_name": "Rhodanese-like domain-containing protein 15, chloroplastic", "refseq_ac": "NP_001078496", "refseq_name": "Rhodanese/Cell cycle control phosphatase superfamily protein", "gene_name": "SEN1; STR15", "gene_names_uniprotkb": "SEN1; STR15; ATSEN1; DARK INDUCIBLE 1; DIN1; F4B14.3; F8D20.280; SEN1; SENESCENCE 1; SENESCENCE ASSOCIATED GENE 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SENESCENCE 1; ATSEN1; DARK INDUCIBLE 1; DIN1; F4B14.3; SEN1; SENESCENCE 1; SENESCENCE ASSOCIATED GENE 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38853", "url": "https://www.uniprot.org/uniprotkb/Q38853" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q38853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38853" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38853" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q38853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38853", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRAINVPYMYRVGSGMVKNP", "down_seq": "FLRQVSSHFRKHDEIIIGCE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38853" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser123" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EWX0-1.512.512", "start_pos": 512, "end_pos": 512, "uniprot_canonical_ac": "Q6EWX0-1", "length": 534, "uniprot_id": "ORC5_ARATH", "protein_name": "Origin of replication complex subunit 5", "refseq_ac": "NP_194720", "refseq_name": "origin recognition complex protein 5", "gene_name": "ORC5", "gene_names_uniprotkb": "ORC5; ATORC5; EMB2798; EMBRYO DEFECTIVE 2798; F27B13.150; F27B13_150", "gene_names_refseq": "ATORC5; EMB2798; EMBRYO DEFECTIVE 2798; F27B13.150; F27B13_150; ORC5; ORIGIN RECOGNITION COMPLEX SUBUNIT 5; origin recognition complex protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EWX0", "url": "https://www.uniprot.org/uniprotkb/Q6EWX0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EWX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EWX0" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q6EWX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EWX0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FLIKSGSCPLEGSIRYRSMV", "down_seq": "EDLAQKVAKSLSFPLSKYLY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EWX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EWX0" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser512" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "512", "end_pos": "512" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1PE89-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "Q1PE89-1", "length": 389, "uniprot_id": "PBL24_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL24", "refseq_ac": "NP_193055", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL24", "gene_names_uniprotkb": "PBL24; F17N18.80; F17N18_80", "gene_names_refseq": "F17N18.80; F17N18_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLEYLHEKANPPVIYRDFKS", "down_seq": "NILLNVDFDAKLSDFGLAKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "site_lbl": "Ser202" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PE89-1.228.228", "start_pos": 228, "end_pos": 228, "uniprot_canonical_ac": "Q1PE89-1", "length": 389, "uniprot_id": "PBL24_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL24", "refseq_ac": "NP_193055", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL24", "gene_names_uniprotkb": "PBL24; F17N18.80; F17N18_80", "gene_names_refseq": "F17N18.80; F17N18_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q1PE89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PE89" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q1PE89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PE89", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VDFDAKLSDFGLAKLGSVGD", "down_seq": "QNVSSRVVGTYGYCAPEYHK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1PE89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PE89" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr228" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q1PE89-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q1PE89-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q1PE89-1.246.246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1PE89-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q1PE89-1", "length": 389, "uniprot_id": "PBL24_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL24", "refseq_ac": "NP_193055", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL24", "gene_names_uniprotkb": "PBL24; F17N18.80; F17N18_80", "gene_names_refseq": "F17N18.80; F17N18_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLSDFGLAKLGSVGDTQNV", "down_seq": "SRVVGTYGYCAPEYHKTGQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q1PE89-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q1PE89-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q1PE89-1.246.246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PE89-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q1PE89-1", "length": 389, "uniprot_id": "PBL24_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL24", "refseq_ac": "NP_193055", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL24", "gene_names_uniprotkb": "PBL24; F17N18.80; F17N18_80", "gene_names_refseq": "F17N18.80; F17N18_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKLGSVGDTQNVSSRVVG", "down_seq": "YGYCAPEYHKTGQLTVKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "site_lbl": "Thr238" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q1PE89-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q1PE89-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q1PE89-1.246.246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PE89-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "Q1PE89-1", "length": 389, "uniprot_id": "PBL24_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL24", "refseq_ac": "NP_193055", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL24", "gene_names_uniprotkb": "PBL24; F17N18.80; F17N18_80", "gene_names_refseq": "F17N18.80; F17N18_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDTQNVSSRVVGTYGYCAPE", "down_seq": "HKTGQLTVKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q1PE89", "url": "https://www.uniprot.org/uniprotkb/Q1PE89" } ], "site_lbl": "Tyr246" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q1PE89-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q1PE89-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q1PE89-1.238.238", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43294-1.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "P43294-1", "length": 443, "uniprot_id": "MHK_ARATH", "protein_name": "Serine/threonine-protein kinase MHK", "refseq_ac": "NP_193038", "refseq_name": "Protein kinase superfamily protein", "gene_name": "MHK", "gene_names_uniprotkb": "MHK; F25G13.110; F25G13_110; PROTEIN KINASE", "gene_names_refseq": "F25G13.110; F25G13_110; MHK; PROTEIN KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43294", "url": "https://www.uniprot.org/uniprotkb/P43294" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43294", "url": "https://www.uniprot.org/uniprotkb/P43294", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NILKIADFGLAREVASMPPY", "down_seq": "EYVSTRWYRAPEVLLQSSLY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P43294", "url": "https://www.uniprot.org/uniprotkb/P43294" }, { "database": "iPTMnet", "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr164" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P43294-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43294-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43294-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "P43294-1", "length": 443, "uniprot_id": "MHK_ARATH", "protein_name": "Serine/threonine-protein kinase MHK", "refseq_ac": "NP_193038", "refseq_name": "Protein kinase superfamily protein", "gene_name": "MHK", "gene_names_uniprotkb": "MHK; F25G13.110; F25G13_110; PROTEIN KINASE", "gene_names_refseq": "F25G13.110; F25G13_110; MHK; PROTEIN KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43294", "url": "https://www.uniprot.org/uniprotkb/P43294" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LKIADFGLAREVASMPPYTE", "down_seq": "VSTRWYRAPEVLLQSSLYTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P43294-1.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43294-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43294-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "P43294-1", "length": 443, "uniprot_id": "MHK_ARATH", "protein_name": "Serine/threonine-protein kinase MHK", "refseq_ac": "NP_193038", "refseq_name": "Protein kinase superfamily protein", "gene_name": "MHK", "gene_names_uniprotkb": "MHK; F25G13.110; F25G13_110; PROTEIN KINASE", "gene_names_refseq": "F25G13.110; F25G13_110; MHK; PROTEIN KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43294", "url": "https://www.uniprot.org/uniprotkb/P43294" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ADFGLAREVASMPPYTEYVS", "down_seq": "RWYRAPEVLLQSSLYTPAVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43294", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43294" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr169" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P43294-1.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43294-1.166.166", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ07-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "Q0WQ07-1", "length": 513, "uniprot_id": "C7051_ARATH", "protein_name": "Cytochrome P450 705A1", "refseq_ac": "NP_193268", "refseq_name": "cytochrome P450, family 705, subfamily A, polypeptide 1", "gene_name": "CYP705A1", "gene_names_uniprotkb": "CYP705A1; DL3710C; FCAALL.270; cytochrome P450; dl3710c; family 705; polypeptide 1; subfamily A", "gene_names_refseq": "''cytochrome P450; CYP705A1; DL3710C; FCAALL.270; cytochrome P450; family 705; polypeptide 1''; polypeptide 1; subfamily A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ07", "url": "https://www.uniprot.org/uniprotkb/Q0WQ07" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ07" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q0WQ07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGHLHLLLSTLIHKSLQKLS", "down_seq": "KYGPLLHLRIFNIPFILVSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ07" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser68" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WQ07-1.70.70", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ07-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "Q0WQ07-1", "length": 513, "uniprot_id": "C7051_ARATH", "protein_name": "Cytochrome P450 705A1", "refseq_ac": "NP_193268", "refseq_name": "cytochrome P450, family 705, subfamily A, polypeptide 1", "gene_name": "CYP705A1", "gene_names_uniprotkb": "CYP705A1; DL3710C; FCAALL.270; cytochrome P450; dl3710c; family 705; polypeptide 1; subfamily A", "gene_names_refseq": "''cytochrome P450; CYP705A1; DL3710C; FCAALL.270; cytochrome P450; family 705; polypeptide 1''; polypeptide 1; subfamily A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ07", "url": "https://www.uniprot.org/uniprotkb/Q0WQ07" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ07" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q0WQ07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HLHLLLSTLIHKSLQKLSSK", "down_seq": "GPLLHLRIFNIPFILVSSDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ07" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr70" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WQ07-1.68.68", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92943-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "P92943-1", "length": 792, "uniprot_id": "CLCD_ARATH", "protein_name": "Chloride channel protein CLC-d", "refseq_ac": "NP_001330038", "refseq_name": "chloride channel D", "gene_name": "CLC-D", "gene_names_uniprotkb": "CLC-D; ATCLC-D; AtCLCd; CBSCLC2; CHLORIDE CHANNEL D; CLCd; F9D12.10; T19G15.90; T19G15_90; chloride channel D", "gene_names_refseq": "ATCLC-D; AtCLCd; CHLORIDE CHANNEL D; CLC-D; CLCd; T19G15.90; T19G15_90; chloride channel D", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A family of putative chloride channels from Arabidopsis and functional complementation of a yeast strain with a CLC gene disruption.", "journal": "The Journal of biological chemistry", "date": "1996-12-27", "authors": "Hechenberger M, Schwappach B, Fischer W N, Frommer W B, Jentsch T J, Steinmeyer K", "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "reference": [ { "type": "PubMed", "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232" } ] } ], "crossref": [ { "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "GIDIPGTLLFRTLIGKIFGS", "down_seq": "GSVGGGLALGKEGPLVHTGA", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "R", "comment": "Abolishes the activity.", "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" }, { "database": "PubMed", "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "471", "end_pos": "471" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "669", "end_pos": "669" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P92943-1.187.187", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92943-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "P92943-1", "length": 792, "uniprot_id": "CLCD_ARATH", "protein_name": "Chloride channel protein CLC-d", "refseq_ac": "NP_001330038", "refseq_name": "chloride channel D", "gene_name": "CLC-D", "gene_names_uniprotkb": "CLC-D; ATCLC-D; AtCLCd; CBSCLC2; CHLORIDE CHANNEL D; CLCd; F9D12.10; T19G15.90; T19G15_90; chloride channel D", "gene_names_refseq": "ATCLC-D; AtCLCd; CHLORIDE CHANNEL D; CLC-D; CLCd; T19G15.90; T19G15_90; chloride channel D", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A family of putative chloride channels from Arabidopsis and functional complementation of a yeast strain with a CLC gene disruption.", "journal": "The Journal of biological chemistry", "date": "1996-12-27", "authors": "Hechenberger M, Schwappach B, Fischer W N, Frommer W B, Jentsch T J, Steinmeyer K", "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "reference": [ { "type": "PubMed", "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232" } ] } ], "crossref": [ { "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "LLFRTLIGKIFGSIGSVGGG", "down_seq": "ALGKEGPLVHTGACIASLLG", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "R", "comment": "Abolishes the activity.", "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" }, { "database": "PubMed", "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "471", "end_pos": "471" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "669", "end_pos": "669" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P92943-1.180.180", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92943-1.471.471", "start_pos": 471, "end_pos": 471, "uniprot_canonical_ac": "P92943-1", "length": 792, "uniprot_id": "CLCD_ARATH", "protein_name": "Chloride channel protein CLC-d", "refseq_ac": "NP_001330038", "refseq_name": "chloride channel D", "gene_name": "CLC-D", "gene_names_uniprotkb": "CLC-D; ATCLC-D; AtCLCd; CBSCLC2; CHLORIDE CHANNEL D; CLCd; F9D12.10; T19G15.90; T19G15_90; chloride channel D", "gene_names_refseq": "ATCLC-D; AtCLCd; CHLORIDE CHANNEL D; CLC-D; CLCd; T19G15.90; T19G15_90; chloride channel D", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A family of putative chloride channels from Arabidopsis and functional complementation of a yeast strain with a CLC gene disruption.", "journal": "The Journal of biological chemistry", "date": "1996-12-27", "authors": "Hechenberger M, Schwappach B, Fischer W N, Frommer W B, Jentsch T J, Steinmeyer K", "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "reference": [ { "type": "PubMed", "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232" } ] } ], "crossref": [ { "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "LLTFLAMFYTLAVVTFGTAV", "down_seq": "AGQFVPGIMIGSTYGRLVGM", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "Abolishes the activity.", "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" }, { "database": "PubMed", "id": "8969232", "url": "https://glygen.org/publication/PubMed/8969232" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "471", "end_pos": "471" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "669", "end_pos": "669" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92943-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "P92943-1", "length": 792, "uniprot_id": "CLCD_ARATH", "protein_name": "Chloride channel protein CLC-d", "refseq_ac": "NP_001330038", "refseq_name": "chloride channel D", "gene_name": "CLC-D", "gene_names_uniprotkb": "CLC-D; ATCLC-D; AtCLCd; CBSCLC2; CHLORIDE CHANNEL D; CLCd; F9D12.10; T19G15.90; T19G15_90; chloride channel D", "gene_names_refseq": "ATCLC-D; AtCLCd; CHLORIDE CHANNEL D; CLC-D; CLCd; T19G15.90; T19G15_90; chloride channel D", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92943", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92943" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92943", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92943", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QNGIESDNLLWSRVPESDDT", "down_seq": "TDDITLLNSHRDGDGGVNSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92943", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92943" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "471", "end_pos": "471" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "669", "end_pos": "669" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92943-1.669.669", "start_pos": 669, "end_pos": 669, "uniprot_canonical_ac": "P92943-1", "length": 792, "uniprot_id": "CLCD_ARATH", "protein_name": "Chloride channel protein CLC-d", "refseq_ac": "NP_001330038", "refseq_name": "chloride channel D", "gene_name": "CLC-D", "gene_names_uniprotkb": "CLC-D; ATCLC-D; AtCLCd; CBSCLC2; CHLORIDE CHANNEL D; CLCd; F9D12.10; T19G15.90; T19G15_90; chloride channel D", "gene_names_refseq": "ATCLC-D; AtCLCd; CHLORIDE CHANNEL D; CLC-D; CLCd; T19G15.90; T19G15_90; chloride channel D", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92943", "url": "https://www.uniprot.org/uniprotkb/P92943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92943", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92943" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92943", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92943", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVDFQHSPLPCDPSARNIRH", "down_seq": "FSEFAKPVSSKGLCIEDIHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92943", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92943" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser669" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "471", "end_pos": "471" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "669", "end_pos": "669" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NMM8-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q6NMM8-1", "length": 469, "uniprot_id": "F8H_ARATH", "protein_name": "Probable glucuronoxylan glucuronosyltransferase F8H", "refseq_ac": "NP_001330046", "refseq_name": "glucuronoxylan glucuronosyltransferase, putative", "gene_name": "F8H", "gene_names_uniprotkb": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "gene_names_refseq": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VRTLDPDEADYFFVPVYVSC", "down_seq": "FSTSNGFPSLSHARSLLSSA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn171", "evidence": [ { "id": "Q6NMM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "411", "end_pos": "411" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NMM8-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q6NMM8-1", "length": 469, "uniprot_id": "F8H_ARATH", "protein_name": "Probable glucuronoxylan glucuronosyltransferase F8H", "refseq_ac": "NP_001330046", "refseq_name": "glucuronoxylan glucuronosyltransferase, putative", "gene_name": "F8H", "gene_names_uniprotkb": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "gene_names_refseq": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HARSLLSSAVDFLSDHYPFW", "down_seq": "RSQGSDHVFVASHDFGACFH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn203", "evidence": [ { "id": "Q6NMM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "411", "end_pos": "411" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NMM8-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "Q6NMM8-1", "length": 469, "uniprot_id": "F8H_ARATH", "protein_name": "Probable glucuronoxylan glucuronosyltransferase F8H", "refseq_ac": "NP_001330046", "refseq_name": "glucuronoxylan glucuronosyltransferase, putative", "gene_name": "F8H", "gene_names_uniprotkb": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "gene_names_refseq": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VNGRRDIWAFFRGKMEVNPK", "down_seq": "ISGRFYSKGVRTAILKKFGG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn301", "evidence": [ { "id": "Q6NMM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "411", "end_pos": "411" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NMM8-1.411.411", "start_pos": 411, "end_pos": 411, "uniprot_canonical_ac": "Q6NMM8-1", "length": 469, "uniprot_id": "F8H_ARATH", "protein_name": "Probable glucuronoxylan glucuronosyltransferase F8H", "refseq_ac": "NP_001330046", "refseq_name": "glucuronoxylan glucuronosyltransferase, putative", "gene_name": "F8H", "gene_names_uniprotkb": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "gene_names_refseq": "F8H; FRA8 homolog; MRN17.17; MRN17_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NMM8", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TVAEKDVRNLRKVLEHVAAT", "down_seq": "LSAIQRNLHEPVFKRALLYN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn411", "evidence": [ { "id": "Q6NMM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NMM8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "411", "end_pos": "411" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46875-1.344.344", "start_pos": 344, "end_pos": 344, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STQIRQLQDRLVNSERRLQV", "down_seq": "DLSTFEKMNEYEDQKQSIID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser344" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P46875-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P46875-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P46875-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P46875-1.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46875-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRQLQDRLVNSERRLQVSDL", "down_seq": "TFEKMNEYEDQKQSIIDLKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser347" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P46875-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P46875-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P46875-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P46875-1.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46875-1.348.348", "start_pos": 348, "end_pos": 348, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RQLQDRLVNSERRLQVSDLS", "down_seq": "FEKMNEYEDQKQSIIDLKSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr348" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P46875-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P46875-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P46875-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P46875-1.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46875-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VNSERRLQVSDLSTFEKMNE", "down_seq": "EDQKQSIIDLKSRVEEAELK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Tyr355" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P46875-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P46875-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P46875-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P46875-1.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46875-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQVSDLSTFEKMNEYEDQKQ", "down_seq": "IIDLKSRVEEAELKLVEGEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser361" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P46875-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P46875-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P46875-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P46875-1.355.355", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46875-1.737.737", "start_pos": 737, "end_pos": 737, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGESLCSLRFAARVNACEIG", "down_seq": "PRRQTNIKPLENRLSLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr737" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P46875-1.752.752", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46875-1.752.752", "start_pos": 752, "end_pos": 752, "uniprot_canonical_ac": "P46875-1", "length": 754, "uniprot_id": "KN14N_ARATH", "protein_name": "Kinesin-like protein KIN-14N", "refseq_ac": "NP_001330580", "refseq_name": "kinesin 3", "gene_name": "ATK3; KIN14N", "gene_names_uniprotkb": "ATK3; KIN14N; ATK3; K5F14.1; KATC; MRB17.18; kinesin 3", "gene_names_refseq": "ATK3; KATC; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C; MRB17.18; kinesin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46875", "url": "https://www.uniprot.org/uniprotkb/P46875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ACEIGTPRRQTNIKPLENRL", "down_seq": "LG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46875" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser752" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P46875-1.737.737", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGTTYRQSQQPNHVVQFPTR", "down_seq": "IESPLSSSTLKNCAKAAIES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9FH80-1.169.169", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FH80-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TYRQSQQPNHVVQFPTRSIE", "down_seq": "PLSSSTLKNCAKAAIESQQH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9FH80-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FH80-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSQQPNHVVQFPTRSIESPL", "down_seq": "SSTLKNCAKAAIESQQHSVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9FH80-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FH80-1.169.169", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9FH80-1.190.190", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLSSSTLKNCAKAAIESQQH", "down_seq": "VLRNDEKLAPVSLDSIGIAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser190" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9FH80-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.567.567", "start_pos": 567, "end_pos": 567, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TASHAAELTAGYYNPSNRDG", "down_seq": "SLVFETLKKYSVTVKFVCPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Tyr567" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9FH80-1.568.568", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FH80-1.573.573", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9FH80-1.577.577", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.568.568", "start_pos": 568, "end_pos": 568, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASHAAELTAGYYNPSNRDGY", "down_seq": "LVFETLKKYSVTVKFVCPGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser568" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9FH80-1.567.567", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9FH80-1.573.573", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9FH80-1.577.577", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.573.573", "start_pos": 573, "end_pos": 573, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ELTAGYYNPSNRDGYSLVFE", "down_seq": "LKKYSVTVKFVCPGPQMSPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Thr573" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9FH80-1.567.567", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9FH80-1.568.568", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FH80-1.577.577", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FH80-1.577.577", "start_pos": 577, "end_pos": 577, "uniprot_canonical_ac": "Q9FH80-1", "length": 689, "uniprot_id": "BAM8_ARATH", "protein_name": "Beta-amylase 8", "refseq_ac": "NP_001032014", "refseq_name": "beta-amylase 2", "gene_name": "BAM8; BMY2", "gene_names_uniprotkb": "BAM8; BMY2; BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "gene_names_refseq": "BAM8; BETA-AMYLASE 8; BMY2; K9E15.8; K9E15_8; beta-amylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FH80", "url": "https://www.uniprot.org/uniprotkb/Q9FH80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GYYNPSNRDGYSLVFETLKK", "down_seq": "SVTVKFVCPGPQMSPNAHEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FH80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FH80" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Tyr577" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "567", "end_pos": "567" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9FH80-1.567.567", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9FH80-1.568.568", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9FH80-1.573.573", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48528-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "P48528-1", "length": 305, "uniprot_id": "PPX2_ARATH", "protein_name": "Serine/threonine-protein phosphatase PP-X isozyme 2", "refseq_ac": "NP_200337", "refseq_name": "protein phosphatase X 2", "gene_name": "PPX2", "gene_names_uniprotkb": "PPX2; MCO15.21; MCO15_21; PPX-2; PROTEIN PHOSPHATASE X -2; protein phosphatase X 2", "gene_names_refseq": "MCO15.21; MCO15_21; PPX-2; PPX2; PROTEIN PHOSPHATASE X -2; protein phosphatase X 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48528", "url": "https://www.uniprot.org/uniprotkb/P48528" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P48528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48528" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P48528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48528", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "DLDKQIEQLKRCEALKESEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48528" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E989-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "Q3E989-1", "length": 512, "uniprot_id": "PME54_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 54", "refseq_ac": "NP_197586", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME54", "gene_names_uniprotkb": "PME54; ARATH54; F22D1.30; F22D1_30", "gene_names_refseq": "F22D1.30; F22D1_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E989", "url": "https://www.uniprot.org/uniprotkb/Q3E989" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E989", "url": "https://www.uniprot.org/uniprotkb/Q3E989", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SCERLMKMSTRRLRQAMEAL", "down_seq": "GSSRKRHTKHDVQTWLSAAM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn131", "evidence": [ { "id": "Q3E989", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E989#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "71", "end_pos": "71" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E989-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q3E989-1", "length": 512, "uniprot_id": "PME54_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 54", "refseq_ac": "NP_197586", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME54", "gene_names_uniprotkb": "PME54; ARATH54; F22D1.30; F22D1_30", "gene_names_refseq": "F22D1.30; F22D1_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E989", "url": "https://www.uniprot.org/uniprotkb/Q3E989" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DTIMKNPKPKTKSTALPRWV", "down_seq": "AGERRLLVGRARAHVVVAKD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr215", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "71", "end_pos": "71" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E989-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "Q3E989-1", "length": 512, "uniprot_id": "PME54_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 54", "refseq_ac": "NP_197586", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME54", "gene_names_uniprotkb": "PME54; ARATH54; F22D1.30; F22D1_30", "gene_names_refseq": "F22D1.30; F22D1_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E989", "url": "https://www.uniprot.org/uniprotkb/Q3E989" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E989", "url": "https://www.uniprot.org/uniprotkb/Q3E989", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NLREFRHGSLDGLDFVSFLV", "down_seq": "KTISDSNLLIPPLSSSMGSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn71", "evidence": [ { "id": "Q3E989", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E989#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "71", "end_pos": "71" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39017-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "Q39017-1", "length": 728, "uniprot_id": "DGK1_ARATH", "protein_name": "Diacylglycerol kinase 1", "refseq_ac": "NP_001331085", "refseq_name": "diacylglycerol kinase1", "gene_name": "DGK1", "gene_names_uniprotkb": "DGK1; ATDGK1; DIACYLGLYCEROL KINASE 1; F13G24.120; F13G24_120; MXM12.16; diacylglycerol kinase1", "gene_names_refseq": "ATDGK1; DGK1; DIACYLGLYCEROL KINASE 1; F13G24.120; F13G24_120; diacylglycerol kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39017", "url": "https://www.uniprot.org/uniprotkb/Q39017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SITHGANELASTALASIRIQ", "down_seq": "KKYKQTNETSADTGNSGSNC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017" } ], "site_lbl": "Ser261" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "335", "end_pos": "335" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q39017-1.264.264", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39017-1.264.264", "start_pos": 264, "end_pos": 264, "uniprot_canonical_ac": "Q39017-1", "length": 728, "uniprot_id": "DGK1_ARATH", "protein_name": "Diacylglycerol kinase 1", "refseq_ac": "NP_001331085", "refseq_name": "diacylglycerol kinase1", "gene_name": "DGK1", "gene_names_uniprotkb": "DGK1; ATDGK1; DIACYLGLYCEROL KINASE 1; F13G24.120; F13G24_120; MXM12.16; diacylglycerol kinase1", "gene_names_refseq": "ATDGK1; DGK1; DIACYLGLYCEROL KINASE 1; F13G24.120; F13G24_120; diacylglycerol kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39017", "url": "https://www.uniprot.org/uniprotkb/Q39017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HGANELASTALASIRIQSKK", "down_seq": "KQTNETSADTGNSGSNCDES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017" } ], "site_lbl": "Tyr264" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "335", "end_pos": "335" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q39017-1.261.261", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39017-1.335.335", "start_pos": 335, "end_pos": 335, "uniprot_canonical_ac": "Q39017-1", "length": 728, "uniprot_id": "DGK1_ARATH", "protein_name": "Diacylglycerol kinase 1", "refseq_ac": "NP_001331085", "refseq_name": "diacylglycerol kinase1", "gene_name": "DGK1", "gene_names_uniprotkb": "DGK1; ATDGK1; DIACYLGLYCEROL KINASE 1; F13G24.120; F13G24_120; MXM12.16; diacylglycerol kinase1", "gene_names_refseq": "ATDGK1; DGK1; DIACYLGLYCEROL KINASE 1; F13G24.120; F13G24_120; diacylglycerol kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39017", "url": "https://www.uniprot.org/uniprotkb/Q39017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGDSDSNGKLEKKPSVKRTG", "down_seq": "FGQKEYHALRSKLKYELADL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39017" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser335" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "335", "end_pos": "335" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NKZ8-1.388.388", "start_pos": 388, "end_pos": 388, "uniprot_canonical_ac": "Q6NKZ8-1", "length": 525, "uniprot_id": "C14A2_ARATH", "protein_name": "Cytochrome P450 714A2", "refseq_ac": "NP_197872", "refseq_name": "cytochrome P450, family 714, subfamily A, polypeptide 2", "gene_name": "CYP714A2", "gene_names_uniprotkb": "CYP714A2; ELA2; EUI-like p450 A2; F6A4.110; F6A4_110; cytochrome P450; family 714; polypeptide 2; subfamily A", "gene_names_refseq": "CYP714A2; ELA2; EUI-like p450 A2; F6A4.110; F6A4_110; cytochrome P450; family 714; polypeptide 2; subfamily A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NKZ8", "url": "https://www.uniprot.org/uniprotkb/Q6NKZ8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NKZ8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NKZ8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSSCKNGIPDAESIPNLKTV", "down_seq": "MVIQETMRLYPPAPIVGREA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NKZ8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NKZ8" } ], "site_lbl": "Thr388" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "388", "end_pos": "388" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q64J17-1.23.24", "start_pos": 23, "end_pos": 24, "uniprot_canonical_ac": "Q64J17-1", "length": 309, "uniprot_id": "PIMT2_ARATH", "protein_name": "Protein-L-isoaspartate O-methyltransferase 2", "refseq_ac": "NP_001078740", "refseq_name": "protein-l-isoaspartate methyltransferase 2", "gene_name": "PIMT2", "gene_names_uniprotkb": "PIMT2; AtPIMT2; K6A12.10; K6A12_10", "gene_names_refseq": "Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2; AtPIMT2; K6A12.10; K6A12_10; PIMT2; protein-l-isoaspartate methyltransferase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q64J17", "url": "https://www.uniprot.org/uniprotkb/Q64J17" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A second protein L-isoaspartyl methyltransferase gene in Arabidopsis produces two transcripts whose products are sequestered in the nucleus.", "journal": "Plant physiology", "date": "2004-09", "authors": "Xu Qilong, Belcastro Marisa P, Villa Sarah T, Dinkins Randy D, Clarke Steven G, Downie A Bruce", "evidence": [ { "database": "UniProtKB", "id": "Q64J17", "url": "https://www.uniprot.org/uniprotkb/Q64J17" } ], "reference": [ { "type": "PubMed", "id": "15347786", "url": "https://glygen.org/publication/PubMed/15347786" } ] } ], "crossref": [ { "id": "Q64J17", "url": "https://www.uniprot.org/uniprotkb/Q64J17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15347786", "url": "https://glygen.org/publication/PubMed/15347786", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "KK", "start_aa": "K", "up_seq": "TNTQTEQQIIREETRIDKII", "down_seq": "RKKKMRAQVLLCPTITAYGR", "mutagenesis": [ { "sequence_org": "KK", "sequence_mut": "RR", "comment": "Loss of nuclear targeting.", "evidence": [ { "database": "UniProtKB", "id": "Q64J17", "url": "https://www.uniprot.org/uniprotkb/Q64J17" }, { "database": "PubMed", "id": "15347786", "url": "https://glygen.org/publication/PubMed/15347786" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "23", "end_pos": "24" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q304A0-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "Q304A0-1", "length": 386, "uniprot_id": "MRS27_ARATH", "protein_name": "Magnesium transporter MRS2-7", "refseq_ac": "NP_001078557", "refseq_name": "magnesium transporter 7", "gene_name": "MGT7; MRS2-7", "gene_names_uniprotkb": "MGT7; MRS2-7; ATMGT7; F17I14.120; F17I14_120; MGT7; MRS2-7; magnesium transporter 7", "gene_names_refseq": "ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7; ATMGT7; F17I14.120; F17I14_120; MGT7; MRS2-7; magnesium transporter 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q304A0", "url": "https://www.uniprot.org/uniprotkb/Q304A0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q304A0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304A0" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q304A0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304A0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSSAVVTAKRKTSQLSRSWI", "down_seq": "IDATGQKTVLDVDKHVIMHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q304A0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q304A0" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser31" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WMY5-1.271.271", "start_pos": 271, "end_pos": 271, "uniprot_canonical_ac": "Q0WMY5-1", "length": 952, "uniprot_id": "PP365_ARATH", "protein_name": "Pentatricopeptide repeat-containing protein At5g04810, chloroplastic", "refseq_ac": "NP_568141", "refseq_name": "pentatricopeptide (PPR) repeat-containing protein", "gene_name": "PPR4", "gene_names_uniprotkb": "PPR4; MUK11.12; MUK11.13; T1E3_170", "gene_names_refseq": "MUK11.12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WMY5", "url": "https://www.uniprot.org/uniprotkb/Q0WMY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WMY5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WMY5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQRVRWVEEGEEDTKMSNKS", "down_seq": "WHQEREGSRKSLQRILDTNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WMY5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WMY5" } ], "site_lbl": "Ser271" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "271", "end_pos": "271" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00IB6-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q00IB6-1", "length": 440, "uniprot_id": "CPL4_ARATH", "protein_name": "RNA polymerase II C-terminal domain phosphatase-like 4", "refseq_ac": "NP_001078764", "refseq_name": "C-terminal domain phosphatase-like 4", "gene_name": "CPL4", "gene_names_uniprotkb": "CPL4; MTI20", "gene_names_refseq": "C-terminal domain phosphatase-like 4; CPL4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q00IB6", "url": "https://www.uniprot.org/uniprotkb/Q00IB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q00IB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00IB6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q00IB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00IB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TMGDRNYARQMAKLLDPKGE", "down_seq": "FGDRVISRDDGTVRHEKSLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q00IB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00IB6" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Tyr220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39067-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q39067-1", "length": 445, "uniprot_id": "CCB12_ARATH", "protein_name": "Cyclin-B1-2", "refseq_ac": "", "refseq_name": "", "gene_name": "CYC1BAT; CYCB1-2", "gene_names_uniprotkb": "CYC1BAT; CYCB1-2; CYC1B; CYCB1:2; CYCLIN B1:2; MBL20.2; MBL20_2; cyclin B 1:2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39067", "url": "https://www.uniprot.org/uniprotkb/Q39067" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39067", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39067" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39067", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39067", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TKKEVAMSPKNKKVTYSSVL", "down_seq": "ARSKAACGIVNKPKIIDIDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39067", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39067" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38799-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q38799-1", "length": 363, "uniprot_id": "ODPB1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial", "refseq_ac": "NP_199898", "refseq_name": "Transketolase family protein", "gene_name": "PDH2", "gene_names_uniprotkb": "PDH2; K16E14.1; MAB1", "gene_names_refseq": "K16E14.6; MAB1; MACCI-BOU", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38799", "url": "https://www.uniprot.org/uniprotkb/Q38799" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q38799", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38799" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q38799", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38799", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLGILRQRAIDGAS", "down_seq": "LRRTRFALVSARSYAAGAKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38799", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38799" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "362", "end_pos": "362" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q38799-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38799-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q38799-1", "length": 363, "uniprot_id": "ODPB1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial", "refseq_ac": "NP_199898", "refseq_name": "Transketolase family protein", "gene_name": "PDH2", "gene_names_uniprotkb": "PDH2; K16E14.1; MAB1", "gene_names_refseq": "K16E14.6; MAB1; MACCI-BOU", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38799", "url": "https://www.uniprot.org/uniprotkb/Q38799" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LSM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LSM7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRQRAIDGASTLRRTRFALV", "down_seq": "ARSYAAGAKEMTVRDALNSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LSM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LSM7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "362", "end_pos": "362" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q38799-1.15.15", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38799-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q38799-1", "length": 363, "uniprot_id": "ODPB1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial", "refseq_ac": "NP_199898", "refseq_name": "Transketolase family protein", "gene_name": "PDH2", "gene_names_uniprotkb": "PDH2; K16E14.1; MAB1", "gene_names_refseq": "K16E14.6; MAB1; MACCI-BOU", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38799", "url": "https://www.uniprot.org/uniprotkb/Q38799" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LSM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LSM7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEGFPQHGVCAEICASVVEE", "down_seq": "FSYLDAPVERIAGADVPMPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LSM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LSM7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser316" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "362", "end_pos": "362" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38799-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "Q38799-1", "length": 363, "uniprot_id": "ODPB1_ARATH", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial", "refseq_ac": "NP_199898", "refseq_name": "Transketolase family protein", "gene_name": "PDH2", "gene_names_uniprotkb": "PDH2; K16E14.1; MAB1", "gene_names_refseq": "K16E14.6; MAB1; MACCI-BOU", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38799", "url": "https://www.uniprot.org/uniprotkb/Q38799" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LSM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LSM7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLALPQIEDIVRASKRACYR", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LSM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LSM7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser362" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "362", "end_pos": "362" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQN9-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q0WQN9-1", "length": 298, "uniprot_id": "CCD42_ARATH", "protein_name": "Cyclin-D4-2", "refseq_ac": "NP_196606", "refseq_name": "cyclin d4;2", "gene_name": "CYCD4-2; CYCD4", "gene_names_uniprotkb": "CYCD4-2; CYCD4; CYCD4:2; F12B17.210; F12B17_210; cyclin d4:2", "gene_names_refseq": "2; CYCD4; F12B17.210; F12B17_210; cyclin d4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQN9", "url": "https://www.uniprot.org/uniprotkb/Q0WQN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SVQRMELLVLNVLRWRLRAV", "down_seq": "PCSYVRYFLSKINGYDQEPH", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr172", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "172", "end_pos": "172" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQN9-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q0WQN9-1", "length": 298, "uniprot_id": "CCD42_ARATH", "protein_name": "Cyclin-D4-2", "refseq_ac": "NP_196606", "refseq_name": "cyclin d4;2", "gene_name": "CYCD4-2; CYCD4", "gene_names_uniprotkb": "CYCD4-2; CYCD4; CYCD4:2; F12B17.210; F12B17_210; cyclin d4:2", "gene_names_refseq": "2; CYCD4; F12B17.210; F12B17_210; cyclin d4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQN9", "url": "https://www.uniprot.org/uniprotkb/Q0WQN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQN9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSLQVIASTTKGIDFLEFRA", "down_seq": "EIAAAVALSVSGEHFDKFSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQN9" } ], "site_lbl": "Ser218" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "172", "end_pos": "172" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQN9-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "Q0WQN9-1", "length": 298, "uniprot_id": "CCD42_ARATH", "protein_name": "Cyclin-D4-2", "refseq_ac": "NP_196606", "refseq_name": "cyclin d4;2", "gene_name": "CYCD4-2; CYCD4", "gene_names_uniprotkb": "CYCD4-2; CYCD4; CYCD4:2; F12B17.210; F12B17_210; cyclin d4:2", "gene_names_refseq": "2; CYCD4; F12B17.210; F12B17_210; cyclin d4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQN9", "url": "https://www.uniprot.org/uniprotkb/Q0WQN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQN9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSSSQTPNNTVLQFKSRRY", "down_seq": "HSLSTASVSSSLTSLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQN9" } ], "site_lbl": "Ser282" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "172", "end_pos": "172" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6GKV1-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "Q6GKV1-1", "length": 324, "uniprot_id": "GET4_ARATH", "protein_name": "Protein GET4", "refseq_ac": "NP_201127", "refseq_name": "golgi-to-ER traffic-like protein", "gene_name": "GET4; MDC12.19", "gene_names_uniprotkb": "GET4; MDC12.19; MDC12.19; MDC12_19", "gene_names_refseq": "MDC12.19; MDC12_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6GKV1", "url": "https://www.uniprot.org/uniprotkb/Q6GKV1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8BH44", "url": "https://www.uniprot.org/uniprotkb/A0A1P8BH44" }, { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRCIFKLFPRVPVPPHLVDV", "down_seq": "DDEDVQNLQESLGEARSRVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6GKV1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6GKV1" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser118" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q500W7-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q500W7-1", "length": 450, "uniprot_id": "PIGM_ARATH", "protein_name": "GPI mannosyltransferase 1", "refseq_ac": "NP_001332623", "refseq_name": "mannosyltransferase family protein", "gene_name": "PIGM; PNT1", "gene_names_uniprotkb": "PIGM; PNT1; PEANUT 1; PNT1; T6G21.34", "gene_names_refseq": "PEANUT 1; PNT1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q500W7", "url": "https://www.uniprot.org/uniprotkb/Q500W7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q500W7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500W7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSRESEN", "down_seq": "DDEPSKWMKFRSLLVFSMLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q500W7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500W7" } ], "site_lbl": "Thr8" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ADGPAYITQCPIKPGHSYVY", "down_seq": "FTVTGQRGTLWWHAHVLWLR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WWKSDTETVVNEALKSGLAP", "down_seq": "VSDAHVINGHPGFVPNCPSQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn185", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGQYLIAAAPFQDSAVVAVD", "down_seq": "RTATATVHYSGTLSATPTKT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VHYSGTLSATPTKTTSPPPQ", "down_seq": "ATSVANTFVNSLRSLNSKTY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HDLLFTVGLGINRCHSCKAG", "down_seq": "FSRVVAAINNITFKMPKTAL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn373", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q6ID18-1.383.383", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.383.383", "start_pos": 383, "end_pos": 383, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "INRCHSCKAGNFSRVVAAIN", "down_seq": "ITFKMPKTALLQAHYFNLTG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn383", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q6ID18-1.373.373", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q6ID18-1.400.400", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AINNITFKMPKTALLQAHYF", "down_seq": "LTGIYTTDFPAKPRRVFDFT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn400", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q6ID18-1.383.383", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GKPPSNLATMKATKLYKLPY", "down_seq": "STVQVVLQDTGNVAPENHPI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn441", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.545.545", "start_pos": 545, "end_pos": 545, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EVHTTWGLKMAFLVENGKGP", "down_seq": "QSIRPPPSDLPKC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn545", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6ID18-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "Q6ID18-1", "length": 558, "uniprot_id": "LAC10_ARATH", "protein_name": "Laccase-10", "refseq_ac": "NP_195739", "refseq_name": "laccase 10", "gene_name": "LAC10", "gene_names_uniprotkb": "LAC10; F7J8.170; F7J8_170; laccase 10", "gene_names_refseq": "F7J8.170; F7J8_170; LAC10; laccase 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6ID18", "url": "https://www.uniprot.org/uniprotkb/Q6ID18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TIYANEDDTILVNVVNNVKY", "down_seq": "VSIHWHGIRQLRTGWADGPA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn76", "evidence": [ { "id": "Q6ID18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6ID18#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJS0-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "Q7XJS0-1", "length": 480, "uniprot_id": "ASHR1_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHR1", "refseq_ac": "", "refseq_name": "", "gene_name": "ASHR1; SDG37", "gene_names_uniprotkb": "ASHR1; SDG37; ASH1-related 1; ASHR1; SDG37; SET DOMAIN GROUP 37; SET domain group 37; SET37; T13L16.8; T13L16_8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJS0", "url": "https://www.uniprot.org/uniprotkb/Q7XJS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LHRDECKALTRLEKEKRKFV", "down_seq": "PTIRLMVRLYIKRNLQNEKV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr108", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "342", "end_pos": "342" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJS0-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "Q7XJS0-1", "length": 480, "uniprot_id": "ASHR1_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHR1", "refseq_ac": "", "refseq_name": "", "gene_name": "ASHR1; SDG37", "gene_names_uniprotkb": "ASHR1; SDG37; ASH1-related 1; ASHR1; SDG37; SET DOMAIN GROUP 37; SET domain group 37; SET37; T13L16.8; T13L16_8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJS0", "url": "https://www.uniprot.org/uniprotkb/Q7XJS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "A0A2H1ZE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A2H1ZE22", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SKEEVKKLASDLKTVSEKAP", "down_seq": "SPSAEDKQAAIELYKTIEKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A2H1ZE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A2H1ZE22" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr342" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "342", "end_pos": "342" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1WIQ6-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q1WIQ6-1", "length": 496, "uniprot_id": "GAPN_ARATH", "protein_name": "NADP-dependent glyceraldehyde-3-phosphate dehydrogenase", "refseq_ac": "NP_001189589", "refseq_name": "aldehyde dehydrogenase 11A3", "gene_name": "ALDH11A3", "gene_names_uniprotkb": "ALDH11A3; F27D4.18; F27D4_18; GAPN; NP-GAPDH; aldehyde dehydrogenase 11A3", "gene_names_refseq": "ALDH11A3; F27D4.18; F27D4_18; NP-GAPDH; aldehyde dehydrogenase 11A3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1WIQ6", "url": "https://www.uniprot.org/uniprotkb/Q1WIQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q1WIQ6", "url": "https://www.uniprot.org/uniprotkb/Q1WIQ6" }, { "database": "iPTMnet", "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q1WIQ6", "url": "https://www.uniprot.org/uniprotkb/Q1WIQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAG", "down_seq": "GLFAEILDGEVYKYYADGEW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q1WIQ6", "url": "https://www.uniprot.org/uniprotkb/Q1WIQ6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "4", "end_pos": "4" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1WIQ6-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "Q1WIQ6-1", "length": 496, "uniprot_id": "GAPN_ARATH", "protein_name": "NADP-dependent glyceraldehyde-3-phosphate dehydrogenase", "refseq_ac": "NP_001189589", "refseq_name": "aldehyde dehydrogenase 11A3", "gene_name": "ALDH11A3", "gene_names_uniprotkb": "ALDH11A3; F27D4.18; F27D4_18; GAPN; NP-GAPDH; aldehyde dehydrogenase 11A3", "gene_names_refseq": "ALDH11A3; F27D4.18; F27D4_18; NP-GAPDH; aldehyde dehydrogenase 11A3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1WIQ6", "url": "https://www.uniprot.org/uniprotkb/Q1WIQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AELLHKAAAILKDNKAPMAE", "down_seq": "LVKEIAKPAKDSVTEVVRSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1WIQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIQ6" } ], "site_lbl": "Ser98" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "4", "end_pos": "4" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P41127-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "P41127-1", "length": 206, "uniprot_id": "RL131_ARATH", "protein_name": "Large ribosomal subunit protein eL13z", "refseq_ac": "NP_001030831", "refseq_name": "breast basic conserved 1", "gene_name": "BBC1; RPL13B", "gene_names_uniprotkb": "BBC1; RPL13B; 40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; T2J13.150; breast basic conserved 1", "gene_names_refseq": "40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; breast basic conserved 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPKKLAPTIGIAVDHRRKNR", "down_seq": "LEGLQTNVQRLKTYKTKLVI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser104" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41127-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "P41127-1", "length": 206, "uniprot_id": "RL131_ARATH", "protein_name": "Large ribosomal subunit protein eL13z", "refseq_ac": "NP_001030831", "refseq_name": "breast basic conserved 1", "gene_name": "BBC1; RPL13B", "gene_names_uniprotkb": "BBC1; RPL13B; 40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; T2J13.150; breast basic conserved 1", "gene_names_refseq": "40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; breast basic conserved 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.", "journal": "Molecular & cellular proteomics : MCP", "date": "2008-02", "authors": "Carroll Adam J, Heazlewood Joshua L, Ito Jun, Millar A Harvey", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "17934214", "url": "https://glygen.org/publication/PubMed/17934214" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17934214", "url": "https://glygen.org/publication/PubMed/17934214", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TYKTKLVIFPRRARKVKAGD", "down_seq": "TPEELANATQVQGDYLPIVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" }, { "database": "PubMed", "id": "17934214", "url": "https://glygen.org/publication/PubMed/17934214" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P41127-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P41127-1.146.146", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41127-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "P41127-1", "length": 206, "uniprot_id": "RL131_ARATH", "protein_name": "Large ribosomal subunit protein eL13z", "refseq_ac": "NP_001030831", "refseq_name": "breast basic conserved 1", "gene_name": "BBC1; RPL13B", "gene_names_uniprotkb": "BBC1; RPL13B; 40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; T2J13.150; breast basic conserved 1", "gene_names_refseq": "40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; breast basic conserved 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" }, { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YKTKLVIFPRRARKVKAGDS", "down_seq": "PEELANATQVQGDYLPIVRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr138" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P41127-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P41127-1.146.146", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41127-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "P41127-1", "length": 206, "uniprot_id": "RL131_ARATH", "protein_name": "Large ribosomal subunit protein eL13z", "refseq_ac": "NP_001030831", "refseq_name": "breast basic conserved 1", "gene_name": "BBC1; RPL13B", "gene_names_uniprotkb": "BBC1; RPL13B; 40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; T2J13.150; breast basic conserved 1", "gene_names_refseq": "40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; breast basic conserved 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRRARKVKAGDSTPEELANA", "down_seq": "QVQGDYLPIVREKPTMELVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr146" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P41127-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P41127-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41127-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "P41127-1", "length": 206, "uniprot_id": "RL131_ARATH", "protein_name": "Large ribosomal subunit protein eL13z", "refseq_ac": "NP_001030831", "refseq_name": "breast basic conserved 1", "gene_name": "BBC1; RPL13B", "gene_names_uniprotkb": "BBC1; RPL13B; 40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; T2J13.150; breast basic conserved 1", "gene_names_refseq": "40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; breast basic conserved 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPIVREKPTMELVKLTSEMK", "down_seq": "FKAFDKIRLERTNKRHAGAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser173" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41127-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "P41127-1", "length": 206, "uniprot_id": "RL131_ARATH", "protein_name": "Large ribosomal subunit protein eL13z", "refseq_ac": "NP_001030831", "refseq_name": "breast basic conserved 1", "gene_name": "BBC1; RPL13B", "gene_names_uniprotkb": "BBC1; RPL13B; 40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; T2J13.150; breast basic conserved 1", "gene_names_refseq": "40S RIBOSOMAL PROTEIN; ATBBC1; BBC1; RSU2; breast basic conserved 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41127", "url": "https://www.uniprot.org/uniprotkb/P41127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTRRRIARQKKAVKIFPRPT", "down_seq": "GPLRPVVHGQTLKYNMKVRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41127" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser50" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "50", "end_pos": "50" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WM29-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q0WM29-1", "length": 607, "uniprot_id": "MMSA_ARATH", "protein_name": "Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial", "refseq_ac": "NP_179032", "refseq_name": "aldehyde dehydrogenase 6B2", "gene_name": "ALDH6B2", "gene_names_uniprotkb": "ALDH6B2; F15N24.6; T22C12.10; T22C12_10; aldehyde dehydrogenase 6B2", "gene_names_refseq": "ALDH6B2; T22C12.10; T22C12_10; aldehyde dehydrogenase 6B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WM29", "url": "https://www.uniprot.org/uniprotkb/Q0WM29" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GICPFNFPAMIPLWMFPVAV", "down_seq": "CGNTFILKPSEKDPGASVIL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr275", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39199-1.369.369", "start_pos": 369, "end_pos": 369, "uniprot_canonical_ac": "Q39199-1", "length": 439, "uniprot_id": "RECAC_ARATH", "protein_name": "DNA repair protein recA homolog 1, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "RECA1; RECA", "gene_names_uniprotkb": "RECA1; RECA; YUP8H12R.33; YUP8H12R_18; YUP8H12R_33; homolog of bacterial RecA", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39199", "url": "https://www.uniprot.org/uniprotkb/Q39199" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39199", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39199", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LGCVLDCAEIMEVVVKKGSW", "down_seq": "SYEDQRLGQGREKALQHLRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39199", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39199" } ], "site_lbl": "Tyr369" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "369", "end_pos": "369" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39199-1.371.371", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39199-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "Q39199-1", "length": 439, "uniprot_id": "RECAC_ARATH", "protein_name": "DNA repair protein recA homolog 1, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "RECA1; RECA", "gene_names_uniprotkb": "RECA1; RECA; YUP8H12R.33; YUP8H12R_18; YUP8H12R_33; homolog of bacterial RecA", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39199", "url": "https://www.uniprot.org/uniprotkb/Q39199" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39199", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39199", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "CVLDCAEIMEVVVKKGSWYS", "down_seq": "EDQRLGQGREKALQHLRENP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39199", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39199" } ], "site_lbl": "Tyr371" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "369", "end_pos": "369" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39199-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39212-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "Q39212-1", "length": 319, "uniprot_id": "RPD3B_ARATH", "protein_name": "DNA-directed RNA polymerases IV and V subunit 3B", "refseq_ac": "NP_179142", "refseq_name": "DNA-directed RNA polymerase family protein", "gene_name": "NRPD3B; NRPE3B", "gene_names_uniprotkb": "NRPD3B; NRPE3B; F26H6.8; F26H6_8; NRPE3B; RBP36B; RPB36B", "gene_names_refseq": "F26H6.8; F26H6_8; NRPE3B; RBP36B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39212", "url": "https://www.uniprot.org/uniprotkb/Q39212" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "A8MR04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MR04" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "A8MR04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MR04", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "INEEMMNTLTDEEKIDLIES", "down_seq": "PTKVFGIDPVTGQVVVVDPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MR04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MR04" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser216" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06611-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q06611-1", "length": 286, "uniprot_id": "PIP12_ARATH", "protein_name": "Aquaporin PIP1-2", "refseq_ac": "NP_182120", "refseq_name": "plasma membrane intrinsic protein 1B", "gene_name": "PIP1-2; PIP1B", "gene_names_uniprotkb": "PIP1-2; PIP1B; ATHH2; F4I18.6; PIP1:2; PIP1B; TMP-A; TMPA; TRANSMEMBRANE PROTEIN A", "gene_names_refseq": "2; ATHH2; F4I18.6; NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1; PIP1B; PIP1; TMP-A; TRANSMEMBRANE PROTEIN A; plasma membrane intrinsic protein 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06611", "url": "https://www.uniprot.org/uniprotkb/Q06611" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKEEDVRVGANKFPERQPIG", "down_seq": "SAQSDKDYKEPPPAPLFEPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr23" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q06611-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q06611-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06611-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q06611-1", "length": 286, "uniprot_id": "PIP12_ARATH", "protein_name": "Aquaporin PIP1-2", "refseq_ac": "NP_182120", "refseq_name": "plasma membrane intrinsic protein 1B", "gene_name": "PIP1-2; PIP1B", "gene_names_uniprotkb": "PIP1-2; PIP1B; ATHH2; F4I18.6; PIP1:2; PIP1B; TMP-A; TMPA; TRANSMEMBRANE PROTEIN A", "gene_names_refseq": "2; ATHH2; F4I18.6; NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1; PIP1B; PIP1; TMP-A; TRANSMEMBRANE PROTEIN A; plasma membrane intrinsic protein 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06611", "url": "https://www.uniprot.org/uniprotkb/Q06611" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEEDVRVGANKFPERQPIGT", "down_seq": "AQSDKDYKEPPPAPLFEPGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser24" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q06611-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q06611-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06611-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q06611-1", "length": 286, "uniprot_id": "PIP12_ARATH", "protein_name": "Aquaporin PIP1-2", "refseq_ac": "NP_182120", "refseq_name": "plasma membrane intrinsic protein 1B", "gene_name": "PIP1-2; PIP1B", "gene_names_uniprotkb": "PIP1-2; PIP1B; ATHH2; F4I18.6; PIP1:2; PIP1B; TMP-A; TMPA; TRANSMEMBRANE PROTEIN A", "gene_names_refseq": "2; ATHH2; F4I18.6; NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1; PIP1B; PIP1; TMP-A; TRANSMEMBRANE PROTEIN A; plasma membrane intrinsic protein 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06611", "url": "https://www.uniprot.org/uniprotkb/Q06611" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVRVGANKFPERQPIGTSAQ", "down_seq": "DKDYKEPPPAPLFEPGELAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q06611", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06611" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q06611-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q06611-1.24.24", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06611-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q06611-1", "length": 286, "uniprot_id": "PIP12_ARATH", "protein_name": "Aquaporin PIP1-2", "refseq_ac": "NP_182120", "refseq_name": "plasma membrane intrinsic protein 1B", "gene_name": "PIP1-2; PIP1B", "gene_names_uniprotkb": "PIP1-2; PIP1B; ATHH2; F4I18.6; PIP1:2; PIP1B; TMP-A; TMPA; TRANSMEMBRANE PROTEIN A", "gene_names_refseq": "2; ATHH2; F4I18.6; NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1; PIP1B; PIP1; TMP-A; TRANSMEMBRANE PROTEIN A; plasma membrane intrinsic protein 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06611", "url": "https://www.uniprot.org/uniprotkb/Q06611" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06611", "url": "https://www.uniprot.org/uniprotkb/Q06611", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGAALAALYHVIVIRAIPFK", "down_seq": "RS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q06611", "url": "https://www.uniprot.org/uniprotkb/Q06611" } ], "site_lbl": "Ser284" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49967-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "P49967-1", "length": 495, "uniprot_id": "SR543_ARATH", "protein_name": "Signal recognition particle subunit SRP54 3", "refseq_ac": "NP_564535", "refseq_name": "Signal recognition particle, SRP54 subunit protein", "gene_name": "SRP-54C", "gene_names_uniprotkb": "SRP-54C; F27K7.8; F27K7_8", "gene_names_refseq": "F27K7.8; F27K7_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49967", "url": "https://www.uniprot.org/uniprotkb/P49967" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P49967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49967" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "P49967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49967", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IITKMDGHAKGGGALSAVAA", "down_seq": "KSPVIFIGTGEHMDEFEVFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49967" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr266" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "266", "end_pos": "266" }, { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49967-1.482.482", "start_pos": 482, "end_pos": 482, "uniprot_canonical_ac": "P49967-1", "length": 495, "uniprot_id": "SR543_ARATH", "protein_name": "Signal recognition particle subunit SRP54 3", "refseq_ac": "NP_564535", "refseq_name": "Signal recognition particle, SRP54 subunit protein", "gene_name": "SRP-54C", "gene_names_uniprotkb": "SRP-54C; F27K7.8; F27K7_8", "gene_names_refseq": "F27K7.8; F27K7_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49967", "url": "https://www.uniprot.org/uniprotkb/P49967" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P49967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49967" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P49967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49967", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QMLKQIGGMGGLQSLMKQMG", "down_seq": "GKDMMGMFGGGDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49967" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser482" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "266", "end_pos": "266" }, { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92996-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "P92996-1", "length": 222, "uniprot_id": "GL120_ARATH", "protein_name": "Germin-like protein subfamily 1 member 20", "refseq_ac": "NP_198735", "refseq_name": "germin-like protein 2", "gene_name": "GER2; GLP5A", "gene_names_uniprotkb": "GER2; GLP5A; ATGER2; GER2; GERM2; GERMIN-LIKE PROTEIN 2A; GLP2A; GLP2B; K3K3.40; K3K3.6; K3K3_40; germin-like protein 2", "gene_names_refseq": "A. THALIANA GERMIN LIKE PROTEIN 2; ATGER2; GER2; GERMIN-LIKE PROTEIN 2A; GLP2A; K3K3.40; K3K3_40; germin-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92996", "url": "https://www.uniprot.org/uniprotkb/P92996" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92996", "url": "https://www.uniprot.org/uniprotkb/P92996", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KDFFFSGLNVPGNTNNQVGS", "down_seq": "VTTVNVDQIPGLNTMGISLV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn77", "evidence": [ { "id": "P92996", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92996#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5FYU1-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q5FYU1-1", "length": 425, "uniprot_id": "ACH1_ARATH", "protein_name": "Acyl-CoA hydrolase 1", "refseq_ac": "NP_001078340", "refseq_name": "Acyl-CoA thioesterase family protein", "gene_name": "CNTE1", "gene_names_uniprotkb": "CNTE1; ACH1; F6N23.2; F6N23.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5FYU1", "url": "https://www.uniprot.org/uniprotkb/Q5FYU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5FYU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5FYU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RLRDGNNFATRSVDARQKGK", "down_seq": "IFTLFASFQKKQQGFIHQES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5FYU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5FYU1" } ], "site_lbl": "Thr223" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" }, { "start_pos": "226", "end_pos": "226" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q5FYU1-1.226.226", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5FYU1-1.226.226", "start_pos": 226, "end_pos": 226, "uniprot_canonical_ac": "Q5FYU1-1", "length": 425, "uniprot_id": "ACH1_ARATH", "protein_name": "Acyl-CoA hydrolase 1", "refseq_ac": "NP_001078340", "refseq_name": "Acyl-CoA thioesterase family protein", "gene_name": "CNTE1", "gene_names_uniprotkb": "CNTE1; ACH1; F6N23.2; F6N23.3", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5FYU1", "url": "https://www.uniprot.org/uniprotkb/Q5FYU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5FYU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5FYU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DGNNFATRSVDARQKGKTIF", "down_seq": "LFASFQKKQQGFIHQESTMP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5FYU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5FYU1" } ], "site_lbl": "Thr226" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" }, { "start_pos": "226", "end_pos": "226" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q5FYU1-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M750-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.", "journal": "The New phytologist", "date": "2014-07", "authors": "Pecher Pascal, Eschen-Lippold Lennart, Herklotz Siska, Kuhle Katja, Naumann Kai, Bethke Gerit, Uhrig Joachim, Weyhe Martin, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLKPNPTHHQPDPRSTPSSF", "down_seq": "IPPIKAVPNKKQSSSSASGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "site_lbl": "Ser106" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.", "journal": "The New phytologist", "date": "2014-07", "authors": "Pecher Pascal, Eschen-Lippold Lennart, Herklotz Siska, Kuhle Katja, Naumann Kai, Bethke Gerit, Uhrig Joachim, Weyhe Martin, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKNLKINPLNPVFNPVNSAF", "down_seq": "PRKPEILSPSILDFPSLVLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser155" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q5M750-1.163.163", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q5M750-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q5M750-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LNPVFNPVNSAFSPRKPEIL", "down_seq": "PSILDFPSLVLSPVTPLIPD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser163" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5M750-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q5M750-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q5M750-1.175.175", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5M750-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVFNPVNSAFSPRKPEILSP", "down_seq": "ILDFPSLVLSPVTPLIPDPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q5M750-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q5M750-1.163.163", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q5M750-1.175.175", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q5M750-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M750-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.", "journal": "The New phytologist", "date": "2014-07", "authors": "Pecher Pascal, Eschen-Lippold Lennart, Herklotz Siska, Kuhle Katja, Naumann Kai, Bethke Gerit, Uhrig Joachim, Weyhe Martin, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MENSPRYREATNLIP", "down_seq": "PRCHNSNNSCGMSSSSESNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRKPEILSPSILDFPSLVL", "down_seq": "PVTPLIPDPFDRSGSSNQSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser175" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5M750-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q5M750-1.163.163", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q5M750-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5M750-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5M750-1.190.190", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5M750-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KPEILSPSILDFPSLVLSPV", "down_seq": "PLIPDPFDRSGSSNQSPNEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5M750-1.163.163", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q5M750-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5M750-1.175.175", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q5M750-1.190.190", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5M750-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSLVLSPVTPLIPDPFDRSG", "down_seq": "SNQSPNELAAEEKAMKERGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser190" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5M750-1.175.175", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q5M750-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5M750-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.", "journal": "The New phytologist", "date": "2014-07", "authors": "Pecher Pascal, Eschen-Lippold Lennart, Herklotz Siska, Kuhle Katja, Naumann Kai, Bethke Gerit, Uhrig Joachim, Weyhe Martin, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSPVTPLIPDPFDRSGSSNQ", "down_seq": "PNELAAEEKAMKERGFYLHP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser194" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q5M750-1.175.175", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q5M750-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q5M750-1.190.190", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.", "journal": "The New phytologist", "date": "2014-07", "authors": "Pecher Pascal, Eschen-Lippold Lennart, Herklotz Siska, Kuhle Katja, Naumann Kai, Bethke Gerit, Uhrig Joachim, Weyhe Martin, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNELAAEEKAMKERGFYLHP", "down_seq": "PATTPMDPEPRLLPLFPVTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser215" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q5M750-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5M750-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5M750-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q5M750-1.235.235", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LAAEEKAMKERGFYLHPSPA", "down_seq": "TPMDPEPRLLPLFPVTSPRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr218" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q5M750-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q5M750-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5M750-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q5M750-1.235.235", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.", "journal": "The New phytologist", "date": "2014-07", "authors": "Pecher Pascal, Eschen-Lippold Lennart, Herklotz Siska, Kuhle Katja, Naumann Kai, Bethke Gerit, Uhrig Joachim, Weyhe Martin, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAEEKAMKERGFYLHPSPAT", "down_seq": "PMDPEPRLLPLFPVTSPRVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "PubMed", "id": "24750137", "url": "https://glygen.org/publication/PubMed/24750137" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr219" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q5M750-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q5M750-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5M750-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5M750-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q5M750-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PSPATTPMDPEPRLLPLFPV", "down_seq": "SPRVSGSSSASTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q5M750-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q5M750-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q5M750-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q5M750-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q5M750-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q5M750-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.235.235", "start_pos": 235, "end_pos": 235, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPATTPMDPEPRLLPLFPVT", "down_seq": "PRVSGSSSASTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" }, { "database": "iPTMnet", "id": "Q5M750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M750" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser235" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5M750-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q5M750-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q5M750-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q5M750-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5M750-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5M750-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M750-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPMDPEPRLLPLFPVTSPRV", "down_seq": "GSSSASTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "site_lbl": "Ser239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5M750-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q5M750-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q5M750-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5M750-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M750-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q5M750-1", "length": 247, "uniprot_id": "VQ4_ARATH", "protein_name": "VQ motif-containing protein 4", "refseq_ac": "NP_564303", "refseq_name": "VQ motif-containing protein", "gene_name": "MVQ1; VQ4", "gene_names_uniprotkb": "MVQ1; VQ4; 6-targeted VQP 1; F3H9.7; F3H9_7; MVQ1", "gene_names_refseq": "F3H9.7; F3H9_7; MPK3/6-targeted VQP 1; MVQ1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEPRLLPLFPVTSPRVSGSS", "down_seq": "ASTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M750", "url": "https://www.uniprot.org/uniprotkb/Q5M750" } ], "site_lbl": "Ser243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q5M750-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q5M750-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q5M750-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XUX6-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q5XUX6-1", "length": 644, "uniprot_id": "RMI1_ARATH", "protein_name": "RecQ-mediated genome instability protein 1", "refseq_ac": "NP_201159", "refseq_name": "recQ-mediated instability protein (DUF1767)", "gene_name": "RMI1", "gene_names_uniprotkb": "RMI1; ATRMI1; BLAP75; MLE2.17; MLE2_17; RECQ MEDIATED INSTABILITY 1", "gene_names_refseq": "ATRMI1; BLAP75; MLE2.17; MLE2_17; RECQ MEDIATED INSTABILITY 1; RMI1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XUX6", "url": "https://www.uniprot.org/uniprotkb/Q5XUX6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GERIAISEVEIIDVFGNPQP", "down_seq": "PPDSSIPTPYPVYPSESVSG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr73", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P41377-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KVMRALGDYQGVKVHACVGG", "down_seq": "SVREDQRILQAGVHVVVGTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" }, { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P41377-1.146.146", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41377-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VMRALGDYQGVKVHACVGGT", "down_seq": "VREDQRILQAGVHVVVGTPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser146" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P41377-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41377-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QNTRDIIMREFRSGSSRVLI", "down_seq": "TDLLARGIDVQQVSLVINFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr334" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41377-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAG", "down_seq": "APEGTQFDTRQFDQRLNEVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P41377-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41377-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IQQRGIVPFCKGLDVIQQAQ", "down_seq": "GTGKTATFCSGVLQQLDYAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P41377-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41377-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QRGIVPFCKGLDVIQQAQSG", "down_seq": "GKTATFCSGVLQQLDYALLQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr87" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P41377-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41377-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P41377-1", "length": 412, "uniprot_id": "IF4A2_ARATH", "protein_name": "Eukaryotic initiation factor 4A-2", "refseq_ac": "NP_175829", "refseq_name": "eif4a-2", "gene_name": "EIF4A-2; TIF4A-2", "gene_names_uniprotkb": "EIF4A-2; TIF4A-2; F20D21.9; F20D21_52; F20D21_9; RH19; eif4a-2", "gene_names_refseq": "EIF4A-2; F20D21.9; F20D21_9; eif4a-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41377", "url": "https://www.uniprot.org/uniprotkb/P41377" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAGSAPEG", "down_seq": "QFDTRQFDQRLNEVLDGQDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41377", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41377" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P41377-1.4.4", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3YL57-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q3YL57-1", "length": 756, "uniprot_id": "NHX8_ARATH", "protein_name": "Sodium/hydrogen exchanger 8", "refseq_ac": "NP_172918", "refseq_name": "Na+/H+ exchanger 8", "gene_name": "NHX8", "gene_names_uniprotkb": "NHX8; ATNHX8; F10B6.1; F10B6_1; H+ exchanger 8; SODIUM HYDROGEN EXCHANGER 8; SOS1B; T5E21.14", "gene_names_refseq": "ATNHX8; F10B6.1; F10B6_1; NHX8; Na+/H+ exchanger 8; SODIUM HYDROGEN EXCHANGER 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3YL57", "url": "https://www.uniprot.org/uniprotkb/Q3YL57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3YL57", "url": "https://www.uniprot.org/uniprotkb/Q3YL57", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AALPYKSPEKAIASSSYSAE", "down_seq": "DSSPVDAVIFAGTSLVLGTA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn27", "evidence": [ { "id": "Q3YL57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3YL57#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "27", "end_pos": "27" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "405", "end_pos": "405" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3YL57-1.401.401", "start_pos": 401, "end_pos": 401, "uniprot_canonical_ac": "Q3YL57-1", "length": 756, "uniprot_id": "NHX8_ARATH", "protein_name": "Sodium/hydrogen exchanger 8", "refseq_ac": "NP_172918", "refseq_name": "Na+/H+ exchanger 8", "gene_name": "NHX8", "gene_names_uniprotkb": "NHX8; ATNHX8; F10B6.1; F10B6_1; H+ exchanger 8; SODIUM HYDROGEN EXCHANGER 8; SOS1B; T5E21.14", "gene_names_refseq": "ATNHX8; F10B6.1; F10B6_1; NHX8; Na+/H+ exchanger 8; SODIUM HYDROGEN EXCHANGER 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3YL57", "url": "https://www.uniprot.org/uniprotkb/Q3YL57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q3YL57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3YL57" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q3YL57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3YL57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDWKESIILTWSGLRGAVSL", "down_seq": "LALSVKQSSGNSYLSSDTGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3YL57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3YL57" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser401" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "27", "end_pos": "27" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "405", "end_pos": "405" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q3YL57-1.405.405", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3YL57-1.405.405", "start_pos": 405, "end_pos": 405, "uniprot_canonical_ac": "Q3YL57-1", "length": 756, "uniprot_id": "NHX8_ARATH", "protein_name": "Sodium/hydrogen exchanger 8", "refseq_ac": "NP_172918", "refseq_name": "Na+/H+ exchanger 8", "gene_name": "NHX8", "gene_names_uniprotkb": "NHX8; ATNHX8; F10B6.1; F10B6_1; H+ exchanger 8; SODIUM HYDROGEN EXCHANGER 8; SOS1B; T5E21.14", "gene_names_refseq": "ATNHX8; F10B6.1; F10B6_1; NHX8; Na+/H+ exchanger 8; SODIUM HYDROGEN EXCHANGER 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3YL57", "url": "https://www.uniprot.org/uniprotkb/Q3YL57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q3YL57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3YL57" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q3YL57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3YL57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESIILTWSGLRGAVSLSLAL", "down_seq": "VKQSSGNSYLSSDTGTRFLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3YL57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3YL57" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser405" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "27", "end_pos": "27" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "405", "end_pos": "405" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q3YL57-1.401.401", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q67YU0-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "Q67YU0-1", "length": 540, "uniprot_id": "CKX5_ARATH", "protein_name": "Cytokinin dehydrogenase 5", "refseq_ac": "NP_177678", "refseq_name": "cytokinin oxidase 5", "gene_name": "CKX5", "gene_names_uniprotkb": "CKX5; ATCKX5; ATCKX6; CKX6; CYTOKININ OXIDASE 6; F1B16.2; F1B16_2; cytokinin oxidase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5; ATCKX5; ATCKX6; CKX5; CYTOKININ OXIDASE 6; F1B16.2; F1B16_2; cytokinin oxidase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67YU0", "url": "https://www.uniprot.org/uniprotkb/Q67YU0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67YU0", "url": "https://www.uniprot.org/uniprotkb/Q67YU0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWRSSFFSPRNPVKISSVSS", "down_seq": "GSVLYCLEITKNYHDSDSEI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn310", "evidence": [ { "id": "Q67YU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q67YU0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "406", "end_pos": "406" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q67YU0-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "Q67YU0-1", "length": 540, "uniprot_id": "CKX5_ARATH", "protein_name": "Cytokinin dehydrogenase 5", "refseq_ac": "NP_177678", "refseq_name": "cytokinin oxidase 5", "gene_name": "CKX5", "gene_names_uniprotkb": "CKX5; ATCKX5; ATCKX6; CKX6; CYTOKININ OXIDASE 6; F1B16.2; F1B16_2; cytokinin oxidase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5; ATCKX5; ATCKX6; CKX5; CYTOKININ OXIDASE 6; F1B16.2; F1B16_2; cytokinin oxidase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q67YU0", "url": "https://www.uniprot.org/uniprotkb/Q67YU0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q67YU0", "url": "https://www.uniprot.org/uniprotkb/Q67YU0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FVPKSRISDFDKGVFKGILG", "down_seq": "KTSGPILIYPMNKDKWDERS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn406", "evidence": [ { "id": "Q67YU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q67YU0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "406", "end_pos": "406" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P57720-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "P57720-1", "length": 436, "uniprot_id": "AROC_ARATH", "protein_name": "Chorismate synthase, chloroplastic", "refseq_ac": "NP_564534", "refseq_name": "chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase", "gene_name": "EMB1144", "gene_names_uniprotkb": "EMB1144; F27K7.1; T24P22.3; T24P22_3; embryo defective 1144", "gene_names_refseq": "EMB1144; T24P22.3; T24P22_3; embryo defective 1144", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57720", "url": "https://www.uniprot.org/uniprotkb/P57720" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVAYRPSHADATYDMKYGVR", "down_seq": "VQGGGRSSARETIGRVAPGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" } ], "site_lbl": "Ser168" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "358", "end_pos": "358" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P57720-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "P57720-1", "length": 436, "uniprot_id": "AROC_ARATH", "protein_name": "Chorismate synthase, chloroplastic", "refseq_ac": "NP_564534", "refseq_name": "chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase", "gene_name": "EMB1144", "gene_names_uniprotkb": "EMB1144; F27K7.1; T24P22.3; T24P22_3; embryo defective 1144", "gene_names_refseq": "EMB1144; T24P22.3; T24P22_3; embryo defective 1144", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57720", "url": "https://www.uniprot.org/uniprotkb/P57720" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GNSVGGVVTCIVRNAPRGLG", "down_seq": "PVFDKLEAELAKACMSLPAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr276" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "358", "end_pos": "358" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57720-1.357.357", "start_pos": 357, "end_pos": 357, "uniprot_canonical_ac": "P57720-1", "length": 436, "uniprot_id": "AROC_ARATH", "protein_name": "Chorismate synthase, chloroplastic", "refseq_ac": "NP_564534", "refseq_name": "chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase", "gene_name": "EMB1144", "gene_names_uniprotkb": "EMB1144; F27K7.1; T24P22.3; T24P22_3; embryo defective 1144", "gene_names_refseq": "EMB1144; T24P22.3; T24P22_3; embryo defective 1144", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57720", "url": "https://www.uniprot.org/uniprotkb/P57720" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IQGGISNGEIINMRVAFKPT", "down_seq": "TIGRKQNTVTRDKVETEMIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser357" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "358", "end_pos": "358" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P57720-1.358.358", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57720-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "P57720-1", "length": 436, "uniprot_id": "AROC_ARATH", "protein_name": "Chorismate synthase, chloroplastic", "refseq_ac": "NP_564534", "refseq_name": "chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase", "gene_name": "EMB1144", "gene_names_uniprotkb": "EMB1144; F27K7.1; T24P22.3; T24P22_3; embryo defective 1144", "gene_names_refseq": "EMB1144; T24P22.3; T24P22_3; embryo defective 1144", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57720", "url": "https://www.uniprot.org/uniprotkb/P57720" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QGGISNGEIINMRVAFKPTS", "down_seq": "IGRKQNTVTRDKVETEMIAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57720", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57720" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr358" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "358", "end_pos": "358" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P57720-1.357.357", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48347-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESTVFFYKMKGDYYRYLAEF", "down_seq": "SGAERKEAADQSLEAYKAAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P48347-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48347-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STVFFYKMKGDYYRYLAEFS", "down_seq": "GAERKEAADQSLEAYKAAVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "site_lbl": "Ser138" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P48347-1.137.137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48347-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPVRLGLALNFSVFYYEILN", "down_seq": "PESACQLAKQAFDDAIAELD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "site_lbl": "Ser188" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48347-1.209.209", "start_pos": 209, "end_pos": 209, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PESACQLAKQAFDDAIAELD", "down_seq": "LNEESYKDSTLIMQLLRDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser209" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48347-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ESYKDSTLIMQLLRDNLTLW", "down_seq": "SDLNEEGDERTKGADEPQDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr233" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P48347-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P48347-1.244.244", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48347-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P48347-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P48347-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYKDSTLIMQLLRDNLTLWT", "down_seq": "DLNEEGDERTKGADEPQDEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P48347-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P48347-1.244.244", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48347-1.244.244", "start_pos": 244, "end_pos": 244, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P48347-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "P48347-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347-1" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLRDNLTLWTSDLNEEGDER", "down_seq": "KGADEPQDEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48347" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr244" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P48347-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P48347-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48347-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P48347-1", "length": 254, "uniprot_id": "14310_ARATH", "protein_name": "14-3-3-like protein GF14 epsilon", "refseq_ac": "NP_564167", "refseq_name": "general regulatory factor 10", "gene_name": "GRF10", "gene_names_uniprotkb": "GRF10; 14-3-3EPSILON; GF14 EPSILON; T16E15.8; general regulatory factor 10", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 EPSILON; 14-3-3EPSILON; GF14 EPSILON; GRF10; general regulatory factor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVSVGYKNVIGARRASWRIL", "down_seq": "SIEQKEESKGNDENVKRLKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48347", "url": "https://www.uniprot.org/uniprotkb/P48347" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUB3-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "Q9ZUB3-1", "length": 334, "uniprot_id": "SPDS1_ARATH", "protein_name": "Spermidine synthase 1", "refseq_ac": "NP_173794", "refseq_name": "spermidine synthase", "gene_name": "SPDS1; SPDSYN1", "gene_names_uniprotkb": "SPDS1; SPDSYN1; F5O8.38; F5O8_38; spermidine synthase 1", "gene_names_refseq": "F5O8.38; F5O8_38; SPDS1; spermidine synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUB3", "url": "https://www.uniprot.org/uniprotkb/Q9ZUB3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUB3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZUB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUB3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDAKET", "down_seq": "ATDLKRPREEDDNGGAATME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUB3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUB3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45434-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "P45434-1", "length": 258, "uniprot_id": "SSRA_ARATH", "protein_name": "Translocon-associated protein subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "F26H11.8; F26H11_8", "gene_names_uniprotkb": "F26H11.8; F26H11_8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45434", "url": "https://www.uniprot.org/uniprotkb/P45434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P45434", "url": "https://www.uniprot.org/uniprotkb/P45434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GVMGIRASVHLPYDHKLLVQ", "down_seq": "LTMLRLNNASIPTSLQATFP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn119", "evidence": [ { "id": "P45434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P45434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P45434-1.127.127", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P45434-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "P45434-1", "length": 258, "uniprot_id": "SSRA_ARATH", "protein_name": "Translocon-associated protein subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "F26H11.8; F26H11_8", "gene_names_uniprotkb": "F26H11.8; F26H11_8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45434", "url": "https://www.uniprot.org/uniprotkb/P45434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P45434", "url": "https://www.uniprot.org/uniprotkb/P45434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VHLPYDHKLLVQNLTMLRLN", "down_seq": "ASIPTSLQATFPYIFAVSQY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn127", "evidence": [ { "id": "P45434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P45434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P45434-1.119.119", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P45434-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "P45434-1", "length": 258, "uniprot_id": "SSRA_ARATH", "protein_name": "Translocon-associated protein subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "F26H11.8; F26H11_8", "gene_names_uniprotkb": "F26H11.8; F26H11_8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45434", "url": "https://www.uniprot.org/uniprotkb/P45434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P45434", "url": "https://www.uniprot.org/uniprotkb/P45434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DVVGENTDDAVEEDDHDLDM", "down_seq": "LSSFPGVETVCVFPKNSAKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn57", "evidence": [ { "id": "P45434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P45434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42776-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "P42776-1", "length": 382, "uniprot_id": "GBF3_ARATH", "protein_name": "G-box-binding factor 3", "refseq_ac": "NP_001323457", "refseq_name": "G-box binding factor 3", "gene_name": "GBF3", "gene_names_uniprotkb": "GBF3; BZIP TRANSCRIPTION FACTOR; BZIP55; G-box binding factor 3; T3F17.8", "gene_names_refseq": "BZIP TRANSCRIPTION FACTOR; G-box binding factor 3; GBF3; T3F17.8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42776", "url": "https://www.uniprot.org/uniprotkb/P42776" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AHPGIPMGSLPQGQKDPPLT", "down_seq": "PGTLLSIDTPTKSTGNTDNG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr111", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P42776-1.125.125", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42776-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "P42776-1", "length": 382, "uniprot_id": "GBF3_ARATH", "protein_name": "G-box-binding factor 3", "refseq_ac": "NP_001323457", "refseq_name": "G-box binding factor 3", "gene_name": "GBF3", "gene_names_uniprotkb": "GBF3; BZIP TRANSCRIPTION FACTOR; BZIP55; G-box binding factor 3; T3F17.8", "gene_names_refseq": "BZIP TRANSCRIPTION FACTOR; G-box binding factor 3; GBF3; T3F17.8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42776", "url": "https://www.uniprot.org/uniprotkb/P42776" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KDPPLTTPGTLLSIDTPTKS", "down_seq": "GNTDNGLMKKLKEFDGLAMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr125" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P42776-1.111.111", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42776-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "P42776-1", "length": 382, "uniprot_id": "GBF3_ARATH", "protein_name": "G-box-binding factor 3", "refseq_ac": "NP_001323457", "refseq_name": "G-box binding factor 3", "gene_name": "GBF3", "gene_names_uniprotkb": "GBF3; BZIP TRANSCRIPTION FACTOR; BZIP55; G-box binding factor 3; T3F17.8", "gene_names_refseq": "BZIP TRANSCRIPTION FACTOR; G-box binding factor 3; GBF3; T3F17.8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42776", "url": "https://www.uniprot.org/uniprotkb/P42776" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPTKDGKQLVQASSFHSVSP", "down_seq": "SGDTGVKLIQGSGAILSPGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser213" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P42776-1.214.214", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42776-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "P42776-1", "length": 382, "uniprot_id": "GBF3_ARATH", "protein_name": "G-box-binding factor 3", "refseq_ac": "NP_001323457", "refseq_name": "G-box binding factor 3", "gene_name": "GBF3", "gene_names_uniprotkb": "GBF3; BZIP TRANSCRIPTION FACTOR; BZIP55; G-box binding factor 3; T3F17.8", "gene_names_refseq": "BZIP TRANSCRIPTION FACTOR; G-box binding factor 3; GBF3; T3F17.8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42776", "url": "https://www.uniprot.org/uniprotkb/P42776" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTKDGKQLVQASSFHSVSPS", "down_seq": "GDTGVKLIQGSGAILSPGVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42776", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42776" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P42776-1.213.213", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82266-1.952.952", "start_pos": 952, "end_pos": 952, "uniprot_canonical_ac": "P82266-1", "length": 1009, "uniprot_id": "KN5C_ARATH", "protein_name": "Kinesin-like protein KIN-5C", "refseq_ac": "NP_181162", "refseq_name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "gene_name": "KIN5C", "gene_names_uniprotkb": "KIN5C; F2H17.19; F2H17_19", "gene_names_refseq": "F2H17.19; F2H17_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82266", "url": "https://www.uniprot.org/uniprotkb/P82266" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EDKAQETFQQQYMEYEPTGA", "down_seq": "PTKNEPEIPTKATIESLRAM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr952" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "952", "end_pos": "952" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P82266-1.954.954", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82266-1.954.954", "start_pos": 954, "end_pos": 954, "uniprot_canonical_ac": "P82266-1", "length": 1009, "uniprot_id": "KN5C_ARATH", "protein_name": "Kinesin-like protein KIN-5C", "refseq_ac": "NP_181162", "refseq_name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "gene_name": "KIN5C", "gene_names_uniprotkb": "KIN5C; F2H17.19; F2H17_19", "gene_names_refseq": "F2H17.19; F2H17_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82266", "url": "https://www.uniprot.org/uniprotkb/P82266" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P82266-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KAQETFQQQYMEYEPTGATP", "down_seq": "KNEPEIPTKATIESLRAMPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82266", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82266" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr954" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "952", "end_pos": "952" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P82266-1.952.952", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.659.659", "start_pos": 659, "end_pos": 659, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PAIKDKNLVLHQKREKQIGT", "down_seq": "PGLLKRKRAAEHGAKNAIHV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr659", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q940Y3-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDRDTAEVQEETANIPESKL", "down_seq": "EDTGSPHHHADILMVQEKAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser171" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q940Y3-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q940Y3-1.176.176", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DTAEVQEETANIPESKLSED", "down_seq": "GSPHHHADILMVQEKAAEEH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr174" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q940Y3-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q940Y3-1.176.176", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEVQEETANIPESKLSEDTG", "down_seq": "PHHHADILMVQEKAAEEHDM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser176" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q940Y3-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q940Y3-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HHADILMVQEKAAEEHDMIA", "down_seq": "GDHEEFPVNPDNKHSEENQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser199" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q940Y3-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q940Y3-1.219.219", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDMIASGDHEEFPVNPDNKH", "down_seq": "EENQSPHHHANNVMEQDQAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q940Y3-1.199.199", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q940Y3-1.219.219", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGDHEEFPVNPDNKHSEENQ", "down_seq": "PHHHANNVMEQDQAAEEREI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser219" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q940Y3-1.199.199", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q940Y3-1.214.214", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HHHANNVMEQDQAAEEREII", "down_seq": "PGEHKEIPANPDTKVVEENN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEVPGSETISKLEDRPSEHL", "down_seq": "ETSMNVEKELEMPAVEILPD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser316" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESLTEMESERVEQGTDKEIG", "down_seq": "GEKRQDDVKETENENSGERV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TEDMKLDVPDSKLVTDTTVD", "down_seq": "TNNKDAHVEANTERQDNSSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser400" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IKSEARGSGDLNNGVHKIVR", "down_seq": "PPVFDGTMRAKRSFLLDDAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr466" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q940Y3-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q940Y3-1.486.486", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.479.479", "start_pos": 479, "end_pos": 479, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" }, { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVHKIVRTPPVFDGTMRAKR", "down_seq": "FLLDDASDGNESGTEEDQSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser479" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q940Y3-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q940Y3-1.486.486", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q940Y3-1.491.491", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q940Y3-1.493.493", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q940Y3-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.486.486", "start_pos": 486, "end_pos": 486, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" }, { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPPVFDGTMRAKRSFLLDDA", "down_seq": "DGNESGTEEDQSAFMKELDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser486" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q940Y3-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q940Y3-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q940Y3-1.491.491", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q940Y3-1.493.493", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q940Y3-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.491.491", "start_pos": 491, "end_pos": 491, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" }, { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGTMRAKRSFLLDDASDGNE", "down_seq": "GTEEDQSAFMKELDSFFRER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser491" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q940Y3-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q940Y3-1.486.486", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q940Y3-1.493.493", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q940Y3-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" }, { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TMRAKRSFLLDDASDGNESG", "down_seq": "EEDQSAFMKELDSFFRERNM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr493" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q940Y3-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q940Y3-1.486.486", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q940Y3-1.491.491", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q940Y3-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" }, { "database": "iPTMnet", "id": "Q940Y3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSFLLDDASDGNESGTEEDQ", "down_seq": "AFMKELDSFFRERNMDFKPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser498" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q940Y3-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q940Y3-1.486.486", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q940Y3-1.491.491", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q940Y3-1.493.493", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q940Y3-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q940Y3-1", "length": 786, "uniprot_id": "ARID3_ARATH", "protein_name": "AT-rich interactive domain-containing protein 3", "refseq_ac": "NP_001325412", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID2; ARID3", "gene_names_uniprotkb": "ARID2; ARID3; F5J6.17; F5J6_17", "gene_names_refseq": "AT2G17400; F5J6.17; F5J6_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940Y3", "url": "https://www.uniprot.org/uniprotkb/Q940Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENENSGERVGEEAPVREHED", "down_seq": "PCLIVIEEGTSLASLEEVTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q940Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q940Y3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "659", "end_pos": "659" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW85-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q9ZW85-1", "length": 251, "uniprot_id": "LEUD3_ARATH", "protein_name": "3-isopropylmalate dehydratase small subunit 1", "refseq_ac": "NP_181837", "refseq_name": "Aconitase/3-isopropylmalate dehydratase protein", "gene_name": "IPMI; SSU1", "gene_names_uniprotkb": "IPMI; SSU1; IPMI SSU1; LEUD3; MFL8.15", "gene_names_refseq": "IPMI SSU1; MFL8.15; isopropylmalate isomerase small subunit 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW85", "url": "https://www.uniprot.org/uniprotkb/Q9ZW85" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW85", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW85" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW85", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW85" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZW85", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW85", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGEMKTKYSIIIGGENFGCG", "down_seq": "SREHAPVCLGAAGAKAVVAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW85", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW85" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser144" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q04088-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q04088-1", "length": 398, "uniprot_id": "POF21_ARATH", "protein_name": "Probable transcription factor PosF21", "refseq_ac": "NP_001031456", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "POSF21", "gene_names_uniprotkb": "POSF21; BZIP59; PosF21; T28P16.14; T28P16_14", "gene_names_refseq": "PosF21; T28P16.14; T28P16_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q04088", "url": "https://www.uniprot.org/uniprotkb/Q04088" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNPQNTVNSLGERPRIRHQH", "down_seq": "QSMDGSMNINEMLMSGNEDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q04088-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q04088-1.166.166", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q04088-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q04088-1", "length": 398, "uniprot_id": "POF21_ARATH", "protein_name": "Probable transcription factor PosF21", "refseq_ac": "NP_001031456", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "POSF21", "gene_names_uniprotkb": "POSF21; BZIP59; PosF21; T28P16.14; T28P16_14", "gene_names_refseq": "PosF21; T28P16.14; T28P16_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q04088", "url": "https://www.uniprot.org/uniprotkb/Q04088" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQNTVNSLGERPRIRHQHSQ", "down_seq": "MDGSMNINEMLMSGNEDDSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q04088-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q04088-1.166.166", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q04088-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "Q04088-1", "length": 398, "uniprot_id": "POF21_ARATH", "protein_name": "Probable transcription factor PosF21", "refseq_ac": "NP_001031456", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "POSF21", "gene_names_uniprotkb": "POSF21; BZIP59; PosF21; T28P16.14; T28P16_14", "gene_names_refseq": "PosF21; T28P16.14; T28P16_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q04088", "url": "https://www.uniprot.org/uniprotkb/Q04088" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VNSLGERPRIRHQHSQSMDG", "down_seq": "MNINEMLMSGNEDDSAIDAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q04088-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q04088-1.162.162", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q04088-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q04088-1", "length": 398, "uniprot_id": "POF21_ARATH", "protein_name": "Probable transcription factor PosF21", "refseq_ac": "NP_001031456", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "POSF21", "gene_names_uniprotkb": "POSF21; BZIP59; PosF21; T28P16.14; T28P16_14", "gene_names_refseq": "PosF21; T28P16.14; T28P16_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q04088", "url": "https://www.uniprot.org/uniprotkb/Q04088" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDKEKSPAPPCGGLPPP", "down_seq": "PSGRCSAFSEAGPIGHGSDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q04088-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q04088-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "Q04088-1", "length": 398, "uniprot_id": "POF21_ARATH", "protein_name": "Probable transcription factor PosF21", "refseq_ac": "NP_001031456", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "POSF21", "gene_names_uniprotkb": "POSF21; BZIP59; PosF21; T28P16.14; T28P16_14", "gene_names_refseq": "PosF21; T28P16.14; T28P16_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q04088", "url": "https://www.uniprot.org/uniprotkb/Q04088" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "GRCSAFSEAGPIGHGSDANR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q04088", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q04088" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q04088-1.18.18", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQF7-1.520.520", "start_pos": 520, "end_pos": 520, "uniprot_canonical_ac": "Q0WQF7-1", "length": 637, "uniprot_id": "ODP21_ARATH", "protein_name": "Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial", "refseq_ac": "NP_190788", "refseq_name": "Dihydrolipoamide acetyltransferase, long form protein", "gene_name": "LTA3", "gene_names_uniprotkb": "LTA3; F4F15.310", "gene_names_refseq": "DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE; LTA3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQF7", "url": "https://www.uniprot.org/uniprotkb/Q0WQF7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQF7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAVATEKGLMTPIIKNADQK", "down_seq": "ISAISLEVKELAQKARSGKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQF7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF7" } ], "site_lbl": "Ser520" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "520", "end_pos": "520" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WQF7-1.522.522", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQF7-1.522.522", "start_pos": 522, "end_pos": 522, "uniprot_canonical_ac": "Q0WQF7-1", "length": 637, "uniprot_id": "ODP21_ARATH", "protein_name": "Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial", "refseq_ac": "NP_190788", "refseq_name": "Dihydrolipoamide acetyltransferase, long form protein", "gene_name": "LTA3", "gene_names_uniprotkb": "LTA3; F4F15.310", "gene_names_refseq": "DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE; LTA3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQF7", "url": "https://www.uniprot.org/uniprotkb/Q0WQF7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQF7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VATEKGLMTPIIKNADQKSI", "down_seq": "AISLEVKELAQKARSGKLAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQF7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF7" } ], "site_lbl": "Ser522" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "520", "end_pos": "520" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WQF7-1.520.520", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1ACB3-1.148.149", "start_pos": 148, "end_pos": 149, "uniprot_canonical_ac": "Q1ACB3-1", "length": 386, "uniprot_id": "HSTC_ARATH", "protein_name": "Homogentisate solanesyltransferase, chloroplastic", "refseq_ac": "NP_001078138", "refseq_name": "homogentisate prenyltransferase", "gene_name": "HST", "gene_names_uniprotkb": "HST; ATHST; HPT2; MEC18; PDS2; PHYTOENE DESATURATION 2; VTE2-2", "gene_names_refseq": "ATHST; HST; PDS2; PHYTOENE DESATURATION 2; homogentisate prenyltransferase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1ACB3", "url": "https://www.uniprot.org/uniprotkb/Q1ACB3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The pds2 mutation is a lesion in the Arabidopsis homogentisate solanesyltransferase gene involved in plastoquinone biosynthesis.", "journal": "Planta", "date": "2007-09", "authors": "Tian Li, DellaPenna Dean, Dixon Richard A", "evidence": [ { "database": "UniProtKB", "id": "Q1ACB3", "url": "https://www.uniprot.org/uniprotkb/Q1ACB3" } ], "reference": [ { "type": "PubMed", "id": "17569077", "url": "https://glygen.org/publication/PubMed/17569077" } ] } ], "crossref": [ { "id": "Q1ACB3", "url": "https://www.uniprot.org/uniprotkb/Q1ACB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17569077", "url": "https://glygen.org/publication/PubMed/17569077", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "VG", "start_aa": "V", "up_seq": "SLVLKALSGLLALICGNGYI", "down_seq": "INQIYDIGIDKVNKPYLPIA", "mutagenesis": [ { "sequence_org": "VG", "sequence_mut": "", "comment": "In pds2; albino phenotype.", "evidence": [ { "database": "UniProtKB", "id": "Q1ACB3", "url": "https://www.uniprot.org/uniprotkb/Q1ACB3" }, { "database": "PubMed", "id": "17569077", "url": "https://glygen.org/publication/PubMed/17569077" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "149" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XF36-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q5XF36-1", "length": 416, "uniprot_id": "KMS1_ARATH", "protein_name": "Vacuole membrane protein KMS1", "refseq_ac": "NP_567450", "refseq_name": "SNARE associated Golgi protein family", "gene_name": "KMS1", "gene_names_uniprotkb": "KMS1; DL3515W; FCAALL.221; Killing Me Slowly 1; dl3515w", "gene_names_refseq": "DL3515W; FCAALL.221; KMS1; Killing Me Slowly 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF36", "url": "https://www.uniprot.org/uniprotkb/Q5XF36" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGSAGVASS", "down_seq": "SDVAISALREKHEKEVENLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "158", "end_pos": "158" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q5XF36-1.11.11", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF36-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q5XF36-1", "length": 416, "uniprot_id": "KMS1_ARATH", "protein_name": "Vacuole membrane protein KMS1", "refseq_ac": "NP_567450", "refseq_name": "SNARE associated Golgi protein family", "gene_name": "KMS1", "gene_names_uniprotkb": "KMS1; DL3515W; FCAALL.221; Killing Me Slowly 1; dl3515w", "gene_names_refseq": "DL3515W; FCAALL.221; KMS1; Killing Me Slowly 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF36", "url": "https://www.uniprot.org/uniprotkb/Q5XF36" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGSAGVASSS", "down_seq": "DVAISALREKHEKEVENLTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "158", "end_pos": "158" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q5XF36-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XF36-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q5XF36-1", "length": 416, "uniprot_id": "KMS1_ARATH", "protein_name": "Vacuole membrane protein KMS1", "refseq_ac": "NP_567450", "refseq_name": "SNARE associated Golgi protein family", "gene_name": "KMS1", "gene_names_uniprotkb": "KMS1; DL3515W; FCAALL.221; Killing Me Slowly 1; dl3515w", "gene_names_refseq": "DL3515W; FCAALL.221; KMS1; Killing Me Slowly 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5XF36", "url": "https://www.uniprot.org/uniprotkb/Q5XF36" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CGRVDLKSAPYDTIQLKRVP", "down_seq": "WLDKSCSEFGPPLMISAAGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5XF36", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XF36" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "158", "end_pos": "158" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MA", "down_seq": "PGASSARDEFVYMAKLAEQA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42643-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RSKIETELSDICDGILKLLD", "down_seq": "ILVPAAASGDSKVFYLKMKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr114" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKDAAEHTLTAYKAAQDIAN", "down_seq": "ELAPTHPIRLGLALNFSVFY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPIRLGLALNFSVFYYEILN", "down_seq": "PDRACNLAKQAFDEAIAELD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42643-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PDRACNLAKQAFDEAIAELD", "down_seq": "LGEESYKDSTLIMQLLRDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" }, { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr216" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ESYKDSTLIMQLLRDNLTLW", "down_seq": "SDMQDDVADDIKEAAPAAAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr240" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P42643-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYKDSTLIMQLLRDNLTLWT", "down_seq": "DMQDDVADDIKEAAPAAAKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P42643-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" }, { "database": "iPTMnet", "id": "P42643-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P42643-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643-1" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P42643-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643-1" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VADDIKEAAPAAAKPADEQQ", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKVAKAVDKDELTVEERNLL", "down_seq": "VAYKNVIGARRASWRIISSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "P42643-1.72.72", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42643-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLSVAYKNVIGARRASWRII", "down_seq": "SIEQKEESRGNDDHVSLIRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P42643-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P42643-1.88.88", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42643-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "P42643-1", "length": 267, "uniprot_id": "14331_ARATH", "protein_name": "14-3-3-like protein GF14 chi", "refseq_ac": "NP_567344", "refseq_name": "general regulatory factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; F23J3.30; GF14 CHI; general regulatory factor 1", "gene_names_refseq": "GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI; GF14 CHI; GRF1; general regulatory factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42643", "url": "https://www.uniprot.org/uniprotkb/P42643" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WRIISSIEQKEESRGNDDHV", "down_seq": "LIRDYRSKIETELSDICDGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42643", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42643" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P42643-1.72.72", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48732-1.484.484", "start_pos": 484, "end_pos": 484, "uniprot_canonical_ac": "P48732-1", "length": 543, "uniprot_id": "DET1_ARATH", "protein_name": "Light-mediated development protein DET1", "refseq_ac": "NP_192756", "refseq_name": "light-mediated development protein 1 / deetiolated1 (DET1)", "gene_name": "DET1", "gene_names_uniprotkb": "DET1; F28M11.100; T9A4.13", "gene_names_refseq": "ATDET1; DE-ETIOLATED 1; DET1; FUS2; FUSCA 2; T9A4.17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48732", "url": "https://www.uniprot.org/uniprotkb/P48732" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48732", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48732", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLISAADRHRQSSDNPIKFI", "down_seq": "RRQPQTLKFKIKPGPECGTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48732", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48732" } ], "site_lbl": "Ser484" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "484", "end_pos": "484" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48785-1.398.398", "start_pos": 398, "end_pos": 398, "uniprot_canonical_ac": "P48785-1", "length": 796, "uniprot_id": "PRH_ARATH", "protein_name": "Pathogenesis-related homeodomain protein", "refseq_ac": "NP_194723", "refseq_name": "pathogenesis related homeodomain protein A", "gene_name": "PRHA; PRH", "gene_names_uniprotkb": "PRHA; PRH; F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA", "gene_names_refseq": "F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA; pathogenesis related homeodomain protein A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48785", "url": "https://www.uniprot.org/uniprotkb/P48785" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P48785-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DYTQLYYEMFGKDAVLQEQG", "down_seq": "EDEDWGPNDRRKRKRESDAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser398" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "398", "end_pos": "398" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "637", "end_pos": "637" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48785-1.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "P48785-1", "length": 796, "uniprot_id": "PRH_ARATH", "protein_name": "Pathogenesis-related homeodomain protein", "refseq_ac": "NP_194723", "refseq_name": "pathogenesis related homeodomain protein A", "gene_name": "PRHA; PRH", "gene_names_uniprotkb": "PRHA; PRH; F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA", "gene_names_refseq": "F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA; pathogenesis related homeodomain protein A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48785", "url": "https://www.uniprot.org/uniprotkb/P48785" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSKKDQDVVETLEQSERDSV", "down_seq": "VENKGGRRRMFRLPRNAVEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser447" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "398", "end_pos": "398" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "637", "end_pos": "637" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48785-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "P48785-1", "length": 796, "uniprot_id": "PRH_ARATH", "protein_name": "Pathogenesis-related homeodomain protein", "refseq_ac": "NP_194723", "refseq_name": "pathogenesis related homeodomain protein A", "gene_name": "PRHA; PRH", "gene_names_uniprotkb": "PRHA; PRH; F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA", "gene_names_refseq": "F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA; pathogenesis related homeodomain protein A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48785", "url": "https://www.uniprot.org/uniprotkb/P48785" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQYLEQNDSSFVLVPHEKQS", "down_seq": "EISLKTAVEENETESKMMKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser611" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "398", "end_pos": "398" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "637", "end_pos": "637" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P48785-1.614.614", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48785-1.614.614", "start_pos": 614, "end_pos": 614, "uniprot_canonical_ac": "P48785-1", "length": 796, "uniprot_id": "PRH_ARATH", "protein_name": "Pathogenesis-related homeodomain protein", "refseq_ac": "NP_194723", "refseq_name": "pathogenesis related homeodomain protein A", "gene_name": "PRHA; PRH", "gene_names_uniprotkb": "PRHA; PRH; F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA", "gene_names_refseq": "F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA; pathogenesis related homeodomain protein A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48785", "url": "https://www.uniprot.org/uniprotkb/P48785" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEQNDSSFVLVPHEKQSSEI", "down_seq": "LKTAVEENETESKMMKEPHE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser614" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "398", "end_pos": "398" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "637", "end_pos": "637" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P48785-1.611.611", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48785-1.637.637", "start_pos": 637, "end_pos": 637, "uniprot_canonical_ac": "P48785-1", "length": 796, "uniprot_id": "PRH_ARATH", "protein_name": "Pathogenesis-related homeodomain protein", "refseq_ac": "NP_194723", "refseq_name": "pathogenesis related homeodomain protein A", "gene_name": "PRHA; PRH", "gene_names_uniprotkb": "PRHA; PRH; F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA", "gene_names_refseq": "F27B13.180; F27B13_180; HOMEODOMAIN PROTEIN; PRHA; pathogenesis related homeodomain protein A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48785", "url": "https://www.uniprot.org/uniprotkb/P48785" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAVEENETESKMMKEPHEEL", "down_seq": "SEMSLKTAAEEKETESKMIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48785", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48785" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser637" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "398", "end_pos": "398" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "637", "end_pos": "637" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPSAPAFDYDVMFKEPKSK", "down_seq": "ASSMPVYDKPVYDDEDVFES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVYDDEDVFESIPELKIPST", "down_seq": "SQSARFENVFSSISSSPTKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDEDVFESIPELKIPSTSSQ", "down_seq": "ARFENVFSSISSSPTKHRKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser140" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPELKIPSTSSQSARFENVF", "down_seq": "SISSSPTKHRKQNSSPFDDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PELKIPSTSSQSARFENVFS", "down_seq": "ISSSPTKHRKQNSSPFDDLM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKIPSTSSQSARFENVFSSI", "down_seq": "SSPTKHRKQNSSPFDDLMGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIPSTSSQSARFENVFSSIS", "down_seq": "SPTKHRKQNSSPFDDLMGNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser152" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPSTSSQSARFENVFSSISS", "down_seq": "PTKHRKQNSSPFDDLMGNNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser153" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "STSSQSARFENVFSSISSSP", "down_seq": "KHRKQNSSPFDDLMGNNLGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr155" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q0WQ57-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q0WQ57-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RFENVFSSISSSPTKHRKQN", "down_seq": "SPFDDLMGNNLGKKESDREE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FENVFSSISSSPTKHRKQNS", "down_seq": "PFDDLMGNNLGKKESDREEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser163" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q0WQ57-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q0WQ57-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q0WQ57-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q0WQ57-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WQ57-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WQ57-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.162.162", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "REEKGSSIFDDLIPGFGRTS", "down_seq": "PPAKRTTSETTSQSQKPPYR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser200" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DMNSRGKSHLRPPGNISGSQ", "down_seq": "PVESSGLYHSKNVSFDDVVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q0WQ57-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WQ57-1.316.316", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGKSHLRPPGNISGSQSPVE", "down_seq": "SGLYHSKNVSFDDVVEPQNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser315" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WQ57-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.316.316", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKSHLRPPGNISGSQSPVES", "down_seq": "GLYHSKNVSFDDVVEPQNTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser316" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WQ57-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.315.315", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NEPSIPTSAYHSHVPSSGRA", "down_seq": "VNSPTASQMDELDDFSIGRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WQ57-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WQ57-1.414.414", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WQ57-1.416.416", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIPTSAYHSHVPSSGRASVN", "down_seq": "PTASQMDELDDFSIGRNQTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser412" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WQ57-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WQ57-1.414.414", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQ57-1.416.416", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.414.414", "start_pos": 414, "end_pos": 414, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PTSAYHSHVPSSGRASVNSP", "down_seq": "ASQMDELDDFSIGRNQTAAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr414" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WQ57-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WQ57-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WQ57-1.416.416", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAYHSHVPSSGRASVNSPTA", "down_seq": "QMDELDDFSIGRNQTAANGY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser416" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q0WQ57-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQ57-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WQ57-1.414.414", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGRASVNSPTASQMDELDDF", "down_seq": "IGRNQTAANGYPDPSSGEDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0WQ57-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q0WQ57-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q0WQ57-1.414.414", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WQ57-1.416.416", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WQ57-1.440.440", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WQ57-1.441.441", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q0WQ57-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.440.440", "start_pos": 440, "end_pos": 440, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELDDFSIGRNQTAANGYPDP", "down_seq": "SGEDSDVFSTAAASAAAMKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser440" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.441.441", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WQ57-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDDFSIGRNQTAANGYPDPS", "down_seq": "GEDSDVFSTAAASAAAMKDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser441" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.440.440", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQ57-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.445.445", "start_pos": 445, "end_pos": 445, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIGRNQTAANGYPDPSSGED", "down_seq": "DVFSTAAASAAAMKDAMDKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser445" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WQ57-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WQ57-1.440.440", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQ57-1.441.441", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DFNTFASSYSFASAAGKKSD", "down_seq": "LPVFDDLGRDGDDLLFRDVF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.676.676", "start_pos": 676, "end_pos": 676, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQQQENNNDLDSFFNSVSRP", "down_seq": "SVPRQRTNPPDPFQDSWNKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser676" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.677.677", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.677.677", "start_pos": 677, "end_pos": 677, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQQENNNDLDSFFNSVSRPS", "down_seq": "VPRQRTNPPDPFQDSWNKGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser677" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.676.676", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.698.698", "start_pos": 698, "end_pos": 698, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPRQRTNPPDPFQDSWNKGG", "down_seq": "FESSRPSSRVPSGPTENLRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser698" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q0WQ57-1.710.710", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.710.710", "start_pos": 710, "end_pos": 710, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDSWNKGGSFESSRPSSRVP", "down_seq": "GPTENLRKASSATNIVDDLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser710" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q0WQ57-1.698.698", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WQ57-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WQ57-1.721.721", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.720.720", "start_pos": 720, "end_pos": 720, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESSRPSSRVPSGPTENLRKA", "down_seq": "SATNIVDDLSSIFGAPASQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser720" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q0WQ57-1.710.710", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQ57-1.721.721", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQ57-1.721.721", "start_pos": 721, "end_pos": 721, "uniprot_canonical_ac": "Q0WQ57-1", "length": 891, "uniprot_id": "AUXI2_ARATH", "protein_name": "Auxilin-related protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "AUXILIN-LIKE2", "gene_names_uniprotkb": "AUXILIN-LIKE2; T20K18.120; T20K18_120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQ57", "url": "https://www.uniprot.org/uniprotkb/Q0WQ57" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSRPSSRVPSGPTENLRKAS", "down_seq": "ATNIVDDLSSIFGAPASQSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQ57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQ57" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser721" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "676", "end_pos": "676" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "698", "end_pos": "698" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q0WQ57-1.710.710", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQ57-1.720.720", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQD2-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YQVSRKTKGSQLVIPRDSFQ", "down_seq": "DTGMEDNASHSTTNQTDESE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn121", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q0WQD2-1.128.128", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WQD2-1.135.135", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KGSQLVIPRDSFQNDTGMED", "down_seq": "ASHSTTNQTDESENQFPNVD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn128", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q0WQD2-1.121.121", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WQD2-1.135.135", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PRDSFQNDTGMEDNASHSTT", "down_seq": "QTDESENQFPNVDFASPAKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn135", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WQD2-1.121.121", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WQD2-1.128.128", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KLMRDQIIMAKAYANIAKSK", "down_seq": "VTNLYVFLMQQCGENKRVIG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn239", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSLYHYAIFSDNVLATSVVV", "down_seq": "STVLNAKEPQRHVFHIVTDK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn386", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.438.438", "start_pos": 438, "end_pos": 438, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "INAPADATIQVENINDFKWL", "down_seq": "SSYCSVLRQLESARLKEYYF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn438", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.545.545", "start_pos": 545, "end_pos": 545, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KVNGAVETCKESFHRFDKYL", "down_seq": "FSNPKISENFDAGACGWAFG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn545", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GACGWAFGMNMFDLKEWRKR", "down_seq": "ITGIYHYWQDLNEDRTLWKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn578", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.610.610", "start_pos": 610, "end_pos": 610, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NEDRTLWKLGSLPPGLITFY", "down_seq": "LTYAMDRSWHVLGLGYDPAL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn610", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQD2-1.631.631", "start_pos": 631, "end_pos": 631, "uniprot_canonical_ac": "Q0WQD2-1", "length": 680, "uniprot_id": "GAUT3_ARATH", "protein_name": "Probable galacturonosyltransferase 3", "refseq_ac": "NP_195540", "refseq_name": "galacturonosyltransferase 3", "gene_name": "GAUT3", "gene_names_uniprotkb": "GAUT3; F22I13.40; F22I13_40; galacturonosyltransferase 3", "gene_names_refseq": "F22I13.40; F22I13_40; GAUT3; galacturonosyltransferase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQD2", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LTYAMDRSWHVLGLGYDPAL", "down_seq": "QTAIENAAVVHYNGNYKPWL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn631", "evidence": [ { "id": "Q0WQD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WQD2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "610", "end_pos": "610" }, { "start_pos": "631", "end_pos": "631" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P45725-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P45725-1", "length": 694, "uniprot_id": "PAL3_ARATH", "protein_name": "Phenylalanine ammonia-lyase 3", "refseq_ac": "NP_001190223", "refseq_name": "phenyl alanine ammonia-lyase 3", "gene_name": "PAL3", "gene_names_uniprotkb": "PAL3; ATPAL3; F21E1.150; F21E1_150; phenyl alanine ammonia-lyase 3", "gene_names_refseq": "ATPAL3; F21E1.150; F21E1_150; PAL3; phenyl alanine ammonia-lyase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45725", "url": "https://www.uniprot.org/uniprotkb/P45725" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QLGGETLTIGQVAAVASGGP", "down_seq": "VELSEEARGGVKASSDWVME", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "103", "end_pos": "103" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "391", "end_pos": "391" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P45725-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "P45725-1", "length": 694, "uniprot_id": "PAL3_ARATH", "protein_name": "Phenylalanine ammonia-lyase 3", "refseq_ac": "NP_001190223", "refseq_name": "phenyl alanine ammonia-lyase 3", "gene_name": "PAL3", "gene_names_uniprotkb": "PAL3; ATPAL3; F21E1.150; F21E1_150; phenyl alanine ammonia-lyase 3", "gene_names_refseq": "ATPAL3; F21E1.150; F21E1_150; PAL3; phenyl alanine ammonia-lyase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45725", "url": "https://www.uniprot.org/uniprotkb/P45725" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WVMESMNRDTDTYGITTGFG", "down_seq": "SSRRRTDQGAALQKELIRYL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser102" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "103", "end_pos": "103" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "391", "end_pos": "391" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P45725-1.103.103", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P45725-1.104.104", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45725-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "P45725-1", "length": 694, "uniprot_id": "PAL3_ARATH", "protein_name": "Phenylalanine ammonia-lyase 3", "refseq_ac": "NP_001190223", "refseq_name": "phenyl alanine ammonia-lyase 3", "gene_name": "PAL3", "gene_names_uniprotkb": "PAL3; ATPAL3; F21E1.150; F21E1_150; phenyl alanine ammonia-lyase 3", "gene_names_refseq": "ATPAL3; F21E1.150; F21E1_150; PAL3; phenyl alanine ammonia-lyase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45725", "url": "https://www.uniprot.org/uniprotkb/P45725" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VMESMNRDTDTYGITTGFGS", "down_seq": "SRRRTDQGAALQKELIRYLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser103" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "103", "end_pos": "103" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "391", "end_pos": "391" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P45725-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P45725-1.104.104", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45725-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "P45725-1", "length": 694, "uniprot_id": "PAL3_ARATH", "protein_name": "Phenylalanine ammonia-lyase 3", "refseq_ac": "NP_001190223", "refseq_name": "phenyl alanine ammonia-lyase 3", "gene_name": "PAL3", "gene_names_uniprotkb": "PAL3; ATPAL3; F21E1.150; F21E1_150; phenyl alanine ammonia-lyase 3", "gene_names_refseq": "ATPAL3; F21E1.150; F21E1_150; PAL3; phenyl alanine ammonia-lyase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45725", "url": "https://www.uniprot.org/uniprotkb/P45725" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MESMNRDTDTYGITTGFGSS", "down_seq": "RRRTDQGAALQKELIRYLNA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser104" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "103", "end_pos": "103" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "391", "end_pos": "391" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P45725-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P45725-1.103.103", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45725-1.391.391", "start_pos": 391, "end_pos": 391, "uniprot_canonical_ac": "P45725-1", "length": 694, "uniprot_id": "PAL3_ARATH", "protein_name": "Phenylalanine ammonia-lyase 3", "refseq_ac": "NP_001190223", "refseq_name": "phenyl alanine ammonia-lyase 3", "gene_name": "PAL3", "gene_names_uniprotkb": "PAL3; ATPAL3; F21E1.150; F21E1_150; phenyl alanine ammonia-lyase 3", "gene_names_refseq": "ATPAL3; F21E1.150; F21E1_150; PAL3; phenyl alanine ammonia-lyase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45725", "url": "https://www.uniprot.org/uniprotkb/P45725" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DNPLIDVSRNKAIHGGNFQG", "down_seq": "PIGVAMDNTRLALASIGKLM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P45725", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45725" } ], "site_lbl": "Thr391" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "103", "end_pos": "103" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "391", "end_pos": "391" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38798-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "Q38798-1", "length": 532, "uniprot_id": "CALX2_ARATH", "protein_name": "Calnexin homolog 2", "refseq_ac": "", "refseq_name": "", "gene_name": "T2I1.50; T2I1_50", "gene_names_uniprotkb": "T2I1.50; T2I1_50", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38798", "url": "https://www.uniprot.org/uniprotkb/Q38798" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38798", "url": "https://www.uniprot.org/uniprotkb/Q38798", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FLSAYKSKIMELIEKAETQP", "down_seq": "LTIGVLISIVIVFLSLFFKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn466", "evidence": [ { "id": "Q38798", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38798#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "466", "end_pos": "466" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38946-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "Q38946-1", "length": 411, "uniprot_id": "DHE2_ARATH", "protein_name": "Glutamate dehydrogenase 2", "refseq_ac": "NP_001119183", "refseq_name": "glutamate dehydrogenase 2", "gene_name": "GDH2", "gene_names_uniprotkb": "GDH2; GLUTAMATE DEHYDROGENASE 2; T2I1.150; T2I1_150; glutamate dehydrogenase 2", "gene_names_refseq": "GDH2; GLUTAMATE DEHYDROGENASE 2; T2I1.150; T2I1_150; glutamate dehydrogenase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38946", "url": "https://www.uniprot.org/uniprotkb/Q38946" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIPYGGAKGGIGCSPRDLSL", "down_seq": "ELERLTRVFTQKIHDLIGIH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser115" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38946-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "Q38946-1", "length": 411, "uniprot_id": "DHE2_ARATH", "protein_name": "Glutamate dehydrogenase 2", "refseq_ac": "NP_001119183", "refseq_name": "glutamate dehydrogenase 2", "gene_name": "GDH2", "gene_names_uniprotkb": "GDH2; GLUTAMATE DEHYDROGENASE 2; T2I1.150; T2I1_150; glutamate dehydrogenase 2", "gene_names_refseq": "GDH2; GLUTAMATE DEHYDROGENASE 2; T2I1.150; T2I1_150; glutamate dehydrogenase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38946", "url": "https://www.uniprot.org/uniprotkb/Q38946" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELQKYMTRAFHNIKTMCHTH", "down_seq": "CNLRMGAFTLGVNRVARATQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser385" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38946-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "Q38946-1", "length": 411, "uniprot_id": "DHE2_ARATH", "protein_name": "Glutamate dehydrogenase 2", "refseq_ac": "NP_001119183", "refseq_name": "glutamate dehydrogenase 2", "gene_name": "GDH2", "gene_names_uniprotkb": "GDH2; GLUTAMATE DEHYDROGENASE 2; T2I1.150; T2I1_150; glutamate dehydrogenase 2", "gene_names_refseq": "GDH2; GLUTAMATE DEHYDROGENASE 2; T2I1.150; T2I1_150; glutamate dehydrogenase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38946", "url": "https://www.uniprot.org/uniprotkb/Q38946" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MNALAA", "down_seq": "NRNFRHASRILGLDSKIERS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38946" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr7" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.1023.1023", "start_pos": 1023, "end_pos": 1023, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" }, { "database": "iPTMnet", "id": "Q9LFQ3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDDNGVEEEGEHDEIDGKAE", "down_seq": "EGEAEGMESHLIEDKGLFPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser1023" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APHTEAQLLRSQAQRYDDRG", "down_seq": "GPPLVRRMFMEKDRRRERTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser222" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FMEKDRRRERTVASRGDRDH", "down_seq": "VDRSDLNDDKSMVKMHRDQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser251" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9LFQ3-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRRRERTVASRGDRDHSVDR", "down_seq": "DLNDDKSMVKMHRDQRKRVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser255" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9LFQ3-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CESIDGFQHLAGVMSKKSLG", "down_seq": "EENLSRSVKGEEKDREHKRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser416" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9LFQ3-1.421.421", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GFQHLAGVMSKKSLGSEENL", "down_seq": "RSVKGEEKDREHKRDVEAAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser421" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9LFQ3-1.416.416", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEKERSKDKYMGKSIQELDL", "down_seq": "DCERCTPSYRLLPPDYPIPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.745.745", "start_pos": 745, "end_pos": 745, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKLWANFLELMLDVAPRAKG", "down_seq": "DSVEDVVETQHQRAFTSGEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser745" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9LFQ3-1.747.747", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.747.747", "start_pos": 747, "end_pos": 747, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LWANFLELMLDVAPRAKGSD", "down_seq": "VEDVVETQHQRAFTSGEANE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser747" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9LFQ3-1.745.745", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.843.843", "start_pos": 843, "end_pos": 843, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATCAEKPQKDQEIGNGAAKR", "down_seq": "GDVDERVATSSSSFPSGVEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "site_lbl": "Ser843" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q9LFQ3-1.854.854", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LFQ3-1.854.854", "start_pos": 854, "end_pos": 854, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EIGNGAAKRSGDVDERVATS", "down_seq": "SSFPSGVENNNGKVGSRDSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser854" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9LFQ3-1.843.843", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.920.920", "start_pos": 920, "end_pos": 920, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIGRIIVLGNGLQSDTSKAN", "down_seq": "NYDESGGPSKIEKEEGELSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser920" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9LFQ3-1.925.925", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9LFQ3-1.939.939", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.925.925", "start_pos": 925, "end_pos": 925, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVLGNGLQSDTSKANSNYDE", "down_seq": "GGPSKIEKEEGELSPVGDSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser925" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9LFQ3-1.920.920", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9LFQ3-1.939.939", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9LFQ3-1.944.944", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.939.939", "start_pos": 939, "end_pos": 939, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSNYDESGGPSKIEKEEGEL", "down_seq": "PVGDSEDNFVVYEDRELKAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser939" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9LFQ3-1.920.920", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9LFQ3-1.925.925", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9LFQ3-1.944.944", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFQ3-1.944.944", "start_pos": 944, "end_pos": 944, "uniprot_canonical_ac": "Q9LFQ3-1", "length": 1367, "uniprot_id": "SNL2_ARATH", "protein_name": "Paired amphipathic helix protein Sin3-like 2", "refseq_ac": "NP_197006", "refseq_name": "SIN3-like 2", "gene_name": "SNL2", "gene_names_uniprotkb": "SNL2; F2G14.140; F2G14_140; SIN3-like 2", "gene_names_refseq": "F2G14.140; F2G14_140; SIN3-like 2; SNL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFQ3", "url": "https://www.uniprot.org/uniprotkb/Q9LFQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESGGPSKIEKEEGELSPVGD", "down_seq": "EDNFVVYEDRELKATAKTEH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LFQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LFQ3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser944" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "843", "end_pos": "843" }, { "start_pos": "854", "end_pos": "854" }, { "start_pos": "920", "end_pos": "920" }, { "start_pos": "925", "end_pos": "925" }, { "start_pos": "939", "end_pos": "939" }, { "start_pos": "944", "end_pos": "944" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9LFQ3-1.925.925", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9LFQ3-1.939.939", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P50287-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "P50287-1", "length": 315, "uniprot_id": "ASPGA_ARATH", "protein_name": "Isoaspartyl peptidase/L-asparaginase 1", "refseq_ac": "NP_196427", "refseq_name": "N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein", "gene_name": "ASPGA1", "gene_names_uniprotkb": "ASPGA1; T22D6.40; T22D6_40; asparaginase A1", "gene_names_refseq": "ASPGA1; T22D6.40; T22D6_40; asparaginase A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50287", "url": "https://www.uniprot.org/uniprotkb/P50287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGKTKRCGAVSGLTTVVNPI", "down_seq": "LARLVMEKTPHIYLAFDAAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P50287-1.97.97", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P50287-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "P50287-1", "length": 315, "uniprot_id": "ASPGA_ARATH", "protein_name": "Isoaspartyl peptidase/L-asparaginase 1", "refseq_ac": "NP_196427", "refseq_name": "N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein", "gene_name": "ASPGA1", "gene_names_uniprotkb": "ASPGA1; T22D6.40; T22D6_40; asparaginase A1", "gene_names_refseq": "ASPGA1; T22D6.40; T22D6_40; asparaginase A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50287", "url": "https://www.uniprot.org/uniprotkb/P50287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P50287", "url": "https://www.uniprot.org/uniprotkb/P50287" }, { "database": "iPTMnet", "id": "P50287-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P50287", "url": "https://www.uniprot.org/uniprotkb/P50287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IARLKQAKEFNRVQLDYTVP", "down_seq": "PKVPDNCGDSQIGTVGCVAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P50287", "url": "https://www.uniprot.org/uniprotkb/P50287" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P50287-1.97.97", "start_pos": 97, "end_pos": 97, "uniprot_canonical_ac": "P50287-1", "length": 315, "uniprot_id": "ASPGA_ARATH", "protein_name": "Isoaspartyl peptidase/L-asparaginase 1", "refseq_ac": "NP_196427", "refseq_name": "N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein", "gene_name": "ASPGA1", "gene_names_uniprotkb": "ASPGA1; T22D6.40; T22D6_40; asparaginase A1", "gene_names_refseq": "ASPGA1; T22D6.40; T22D6_40; asparaginase A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50287", "url": "https://www.uniprot.org/uniprotkb/P50287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTVEMEASIMDGKTKRCGAV", "down_seq": "GLTTVVNPISLARLVMEKTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P50287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50287" } ], "site_lbl": "Ser97" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P50287-1.107.107", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56WV9-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q56WV9-1", "length": 117, "uniprot_id": "SCOP5_ARATH", "protein_name": "Serine rich endogenous peptide 5", "refseq_ac": "NP_001331891", "refseq_name": "uncharacterized protein", "gene_name": "PROSCOOP5", "gene_names_uniprotkb": "PROSCOOP5; K15C23.1; K15C23_1; SCOOP5", "gene_names_refseq": "K15C23.1; K15C23_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56WV9", "url": "https://www.uniprot.org/uniprotkb/Q56WV9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PTLRVPPPPPPPLPQMPSAA", "down_seq": "PPPMPQLSPLQPKMHVSSLQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr78", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49107-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "P49107-1", "length": 171, "uniprot_id": "PSAN_ARATH", "protein_name": "Photosystem I reaction center subunit N, chloroplastic", "refseq_ac": "NP_201209", "refseq_name": "photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)", "gene_name": "PSAN", "gene_names_uniprotkb": "PSAN; MHJ24.2; MHJ24_2; PSI-N", "gene_names_refseq": "MHJ24.2; MHJ24_2; PSAN; PSI-N", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49107", "url": "https://www.uniprot.org/uniprotkb/P49107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P49107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49107" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P49107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49107" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P49107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49107", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKRLATSGANFARAFTVQFG", "down_seq": "CKFPENFTGCQDLAKQKKVP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49107" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser125" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49691-1.161.161", "start_pos": 161, "end_pos": 161, "uniprot_canonical_ac": "P49691-1", "length": 407, "uniprot_id": "RL4B_ARATH", "protein_name": "Large ribosomal subunit protein uL4y", "refseq_ac": "NP_195907", "refseq_name": "Ribosomal protein L4/L1 family", "gene_name": "RPL4D; RPL4", "gene_names_uniprotkb": "RPL4D; RPL4; F9G14.180; F9G14_180; RPL1; RPL4", "gene_names_refseq": "F9G14.180; F9G14_180", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49691", "url": "https://www.uniprot.org/uniprotkb/P49691" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P49691-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALVMARGHKIENVPEMPLVV", "down_seq": "DSAEAVEKTSAAIKVLKQIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser161" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "163", "end_pos": "163" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P49691-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49691-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "P49691-1", "length": 407, "uniprot_id": "RL4B_ARATH", "protein_name": "Large ribosomal subunit protein uL4y", "refseq_ac": "NP_195907", "refseq_name": "Ribosomal protein L4/L1 family", "gene_name": "RPL4D; RPL4", "gene_names_uniprotkb": "RPL4D; RPL4; F9G14.180; F9G14_180; RPL1; RPL4", "gene_names_refseq": "F9G14.180; F9G14_180", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49691", "url": "https://www.uniprot.org/uniprotkb/P49691" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P49691-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VMARGHKIENVPEMPLVVSD", "down_seq": "AEAVEKTSAAIKVLKQIGAY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49691", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49691" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser163" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "163", "end_pos": "163" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P49691-1.161.161", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DLSVLNLVIVKKGVSDLPGL", "down_seq": "DTEKPRMRGPKRASKIRKLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr127" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLQRKRARIADKKKRIAKAN", "down_seq": "DAADYQKLLASRLKEQRDRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DAADYQKLLASRLKEQRDRR", "down_seq": "ESLAKKRSRLSSAPAKPVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P51430-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P51430-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P51430-1.240.240", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P51430-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADYQKLLASRLKEQRDRRSE", "down_seq": "LAKKRSRLSSAPAKPVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser231" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P51430-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P51430-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P51430-1.240.240", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P51430-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" }, { "database": "iPTMnet", "id": "P51430-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LASRLKEQRDRRSESLAKKR", "down_seq": "RLSSAPAKPVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" }, { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P51430-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P51430-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P51430-1.240.240", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P51430-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" }, { "database": "iPTMnet", "id": "P51430-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" }, { "database": "iPTMnet", "id": "P51430-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.", "journal": "Molecular & cellular proteomics : MCP", "date": "2008-02", "authors": "Carroll Adam J, Heazlewood Joshua L, Ito Jun, Millar A Harvey", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "17934214", "url": "https://glygen.org/publication/PubMed/17934214" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17934214", "url": "https://glygen.org/publication/PubMed/17934214", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLKEQRDRRSESLAKKRSRL", "down_seq": "SAPAKPVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "17934214", "url": "https://glygen.org/publication/PubMed/17934214" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser240" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P51430-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P51430-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P51430-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P51430-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" }, { "database": "iPTMnet", "id": "P51430-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" }, { "database": "iPTMnet", "id": "P51430-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKEQRDRRSESLAKKRSRLS", "down_seq": "APAKPVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P51430-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P51430-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P51430-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P51430-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EIDDDQKLRAFFDKRLSQEV", "down_seq": "GDALGEEFKGYVFKIMGGCD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51430-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P51430-1", "length": 249, "uniprot_id": "RS62_ARATH", "protein_name": "Small ribosomal subunit protein eS6y", "refseq_ac": "NP_196598", "refseq_name": "Ribosomal protein S6e", "gene_name": "EMB3010; RPS6B", "gene_names_uniprotkb": "EMB3010; RPS6B; EMB3010; F12B17.290; F12B17_290; RPS6B; RPS6; embryo defective 3010", "gene_names_refseq": "EMB3010; F12B17.290; F12B17_290; RPS6B; Ribosomal protein small subunit 6b; embryo defective 3010", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51430", "url": "https://www.uniprot.org/uniprotkb/P51430" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VFKIMGGCDKQGFPMKQGVL", "down_seq": "PGRVRLLLHRGTPCFRGHGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51430", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51430" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr69" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37271-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "P37271-1", "length": 422, "uniprot_id": "PSY_ARATH", "protein_name": "Phytoene synthase 1, chloroplastic", "refseq_ac": "NP_001031895", "refseq_name": "PHYTOENE SYNTHASE", "gene_name": "PSY1; PSY", "gene_names_uniprotkb": "PSY1; PSY; MKP11.8; PHYTOENE SYNTHASE; PSY", "gene_names_refseq": "PHYTOENE SYNTHASE; PSY", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37271", "url": "https://www.uniprot.org/uniprotkb/P37271" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P37271", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37271", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VYNVVLKQAALVNKQLRSSS", "down_seq": "DLDVKKPQDVVLPGSLSLLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37271", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37271" } ], "site_lbl": "Tyr109" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48348-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "P48348-1", "length": 248, "uniprot_id": "14338_ARATH", "protein_name": "14-3-3-like protein G-BOX factor 14 kappa", "refseq_ac": "NP_569012", "refseq_name": "general regulatory factor 8", "gene_name": "GRF8", "gene_names_uniprotkb": "GRF8; 14-3-3KAPPA; ATMIN10; GF14 KAPPA ISOFORM; GF14 KAPPA; MNA5.16; MNA5_16; general regulatory factor 8", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 KAPPA; 14-3-3KAPPA; GF14 KAPPA ISOFORM; GF14 KAPPA; GRF8; MNA5.16; MNA5_16; general regulatory factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EQAERYEEMVQFMEQLVSGA", "down_seq": "PAGELTVEERNLLSVAYKNV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "38", "end_pos": "38" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P48348-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48348-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "P48348-1", "length": 248, "uniprot_id": "14338_ARATH", "protein_name": "14-3-3-like protein G-BOX factor 14 kappa", "refseq_ac": "NP_569012", "refseq_name": "general regulatory factor 8", "gene_name": "GRF8", "gene_names_uniprotkb": "GRF8; 14-3-3KAPPA; ATMIN10; GF14 KAPPA ISOFORM; GF14 KAPPA; MNA5.16; MNA5_16; general regulatory factor 8", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 KAPPA; 14-3-3KAPPA; GF14 KAPPA ISOFORM; GF14 KAPPA; GRF8; MNA5.16; MNA5_16; general regulatory factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSKVETELSSICSGILRLLD", "down_seq": "HLIPSATASESKVFYLKMKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "site_lbl": "Ser112" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "38", "end_pos": "38" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48348-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "P48348-1", "length": 248, "uniprot_id": "14338_ARATH", "protein_name": "14-3-3-like protein G-BOX factor 14 kappa", "refseq_ac": "NP_569012", "refseq_name": "general regulatory factor 8", "gene_name": "GRF8", "gene_names_uniprotkb": "GRF8; 14-3-3KAPPA; ATMIN10; GF14 KAPPA ISOFORM; GF14 KAPPA; MNA5.16; MNA5_16; general regulatory factor 8", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 KAPPA; 14-3-3KAPPA; GF14 KAPPA ISOFORM; GF14 KAPPA; GRF8; MNA5.16; MNA5_16; general regulatory factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPIRLGLALNFSVFYYEILN", "down_seq": "SEKACSMAKQAFEEAIAELD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "38", "end_pos": "38" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48348-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "P48348-1", "length": 248, "uniprot_id": "14338_ARATH", "protein_name": "14-3-3-like protein G-BOX factor 14 kappa", "refseq_ac": "NP_569012", "refseq_name": "general regulatory factor 8", "gene_name": "GRF8", "gene_names_uniprotkb": "GRF8; 14-3-3KAPPA; ATMIN10; GF14 KAPPA ISOFORM; GF14 KAPPA; MNA5.16; MNA5_16; general regulatory factor 8", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 KAPPA; 14-3-3KAPPA; GF14 KAPPA ISOFORM; GF14 KAPPA; GRF8; MNA5.16; MNA5_16; general regulatory factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SEKACSMAKQAFEEAIAELD", "down_seq": "LGEESYKDSTLIMQLLRDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "site_lbl": "Thr214" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "38", "end_pos": "38" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48348-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "P48348-1", "length": 248, "uniprot_id": "14338_ARATH", "protein_name": "14-3-3-like protein G-BOX factor 14 kappa", "refseq_ac": "NP_569012", "refseq_name": "general regulatory factor 8", "gene_name": "GRF8", "gene_names_uniprotkb": "GRF8; 14-3-3KAPPA; ATMIN10; GF14 KAPPA ISOFORM; GF14 KAPPA; MNA5.16; MNA5_16; general regulatory factor 8", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 KAPPA; 14-3-3KAPPA; GF14 KAPPA ISOFORM; GF14 KAPPA; GRF8; MNA5.16; MNA5_16; general regulatory factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P48348", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48348" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P48348", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48348", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLVSGATPAGELTVEERNLL", "down_seq": "VAYKNVIGSLRAAWRIVSSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P48348", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48348" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "38", "end_pos": "38" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P48348-1.38.38", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P48348-1.70.70", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48348-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "P48348-1", "length": 248, "uniprot_id": "14338_ARATH", "protein_name": "14-3-3-like protein G-BOX factor 14 kappa", "refseq_ac": "NP_569012", "refseq_name": "general regulatory factor 8", "gene_name": "GRF8", "gene_names_uniprotkb": "GRF8; 14-3-3KAPPA; ATMIN10; GF14 KAPPA ISOFORM; GF14 KAPPA; MNA5.16; MNA5_16; general regulatory factor 8", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 KAPPA; 14-3-3KAPPA; GF14 KAPPA ISOFORM; GF14 KAPPA; GRF8; MNA5.16; MNA5_16; general regulatory factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLSVAYKNVIGSLRAAWRIV", "down_seq": "SIEQKEESRKNEEHVSLVKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48348", "url": "https://www.uniprot.org/uniprotkb/P48348" } ], "site_lbl": "Ser70" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "38", "end_pos": "38" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P48348-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P35614-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "P35614-1", "length": 435, "uniprot_id": "ERF1Z_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-3", "refseq_ac": "NP_189295", "refseq_name": "eukaryotic release factor 1-3", "gene_name": "ERF1-3", "gene_names_uniprotkb": "ERF1-3; MFE16.17", "gene_names_refseq": "ERF1-3; eukaryotic release factor 1-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Translation termination in Arabidopsis thaliana: characterisation of three versions of release factor 1.", "journal": "Gene", "date": "2004-10-27", "authors": "Chapman Bernice, Brown Chris", "evidence": [ { "database": "UniProtKB", "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614" } ], "reference": [ { "type": "PubMed", "id": "15474304", "url": "https://glygen.org/publication/PubMed/15474304" } ] } ], "crossref": [ { "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15474304", "url": "https://glygen.org/publication/PubMed/15474304", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "GNTREVLHKFTVDLPKKHGR", "down_seq": "GQSALRFARLRMEKRHNYVR", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of peptidyl-tRNA hydrolytic activity.", "evidence": [ { "database": "UniProtKB", "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614" }, { "database": "PubMed", "id": "15474304", "url": "https://glygen.org/publication/PubMed/15474304" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "421", "end_pos": "421" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P35614-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "P35614-1", "length": 435, "uniprot_id": "ERF1Z_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-3", "refseq_ac": "NP_189295", "refseq_name": "eukaryotic release factor 1-3", "gene_name": "ERF1-3", "gene_names_uniprotkb": "ERF1-3; MFE16.17", "gene_names_refseq": "ERF1-3; eukaryotic release factor 1-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QFCRGFGGIGGLLRYQLDMR", "down_seq": "FDELSDGEVYEDSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr421" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "421", "end_pos": "421" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P35614-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P35614-1.434.434", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P35614-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "P35614-1", "length": 435, "uniprot_id": "ERF1Z_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-3", "refseq_ac": "NP_189295", "refseq_name": "eukaryotic release factor 1-3", "gene_name": "ERF1-3", "gene_names_uniprotkb": "ERF1-3; MFE16.17", "gene_names_refseq": "ERF1-3; eukaryotic release factor 1-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGGIGGLLRYQLDMRTFDEL", "down_seq": "DGEVYEDSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser426" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "421", "end_pos": "421" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P35614-1.421.421", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P35614-1.434.434", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P35614-1.434.434", "start_pos": 434, "end_pos": 434, "uniprot_canonical_ac": "P35614-1", "length": 435, "uniprot_id": "ERF1Z_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-3", "refseq_ac": "NP_189295", "refseq_name": "eukaryotic release factor 1-3", "gene_name": "ERF1-3", "gene_names_uniprotkb": "ERF1-3; MFE16.17", "gene_names_refseq": "ERF1-3; eukaryotic release factor 1-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P35614", "url": "https://www.uniprot.org/uniprotkb/P35614" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RYQLDMRTFDELSDGEVYED", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P35614", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35614" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser434" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "421", "end_pos": "421" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P35614-1.421.421", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P35614-1.426.426", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P36210-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "P36210-1", "length": 191, "uniprot_id": "RK121_ARATH", "protein_name": "Large ribosomal subunit protein bL12cz", "refseq_ac": "", "refseq_name": "", "gene_name": "RPL12A", "gene_names_uniprotkb": "RPL12A; K16N12.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P36210", "url": "https://www.uniprot.org/uniprotkb/P36210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MASTTLSIA", "down_seq": "TIRSSSYPTLASINHFPSRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr10" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P36210-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P36210-1.11.11", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P36210-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "P36210-1", "length": 191, "uniprot_id": "RK121_ARATH", "protein_name": "Large ribosomal subunit protein bL12cz", "refseq_ac": "", "refseq_name": "", "gene_name": "RPL12A", "gene_names_uniprotkb": "RPL12A; K16N12.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P36210", "url": "https://www.uniprot.org/uniprotkb/P36210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MASTTLSIAT", "down_seq": "IRSSSYPTLASINHFPSRTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr11" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P36210-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P36210-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P36210-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "P36210-1", "length": 191, "uniprot_id": "RK121_ARATH", "protein_name": "Large ribosomal subunit protein bL12cz", "refseq_ac": "", "refseq_name": "", "gene_name": "RPL12A", "gene_names_uniprotkb": "RPL12A; K16N12.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P36210", "url": "https://www.uniprot.org/uniprotkb/P36210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAS", "down_seq": "TLSIATTIRSSSYPTLASIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P36210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P36210" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P36210-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P36210-1.11.11", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42645-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPIRLGLALNFSVFYYEILN", "down_seq": "SDRACSLAKQAFDEAISELD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "site_lbl": "Ser192" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42645-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SDRACSLAKQAFDEAISELD", "down_seq": "LGEESYKDSTLIMQLLRDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "site_lbl": "Thr213" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42645-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYKDSTLIMQLLRDNLTLWT", "down_seq": "DLNDEAGDDIKEAPKEVQKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser238" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42645-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" }, { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIKEAPKEVQKVDEQAQPPP", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42645-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKVAKTVETEELTVEERNLL", "down_seq": "VAYKNVIGARRASWRIISSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "P42645-1.69.69", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42645-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSSD", "down_seq": "SREENVYLAKLAEQAERYEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42645" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42645-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P42645-1", "length": 268, "uniprot_id": "14335_ARATH", "protein_name": "14-3-3-like protein GF14 upsilon", "refseq_ac": "NP_001331015", "refseq_name": "general regulatory factor 5", "gene_name": "GRF5", "gene_names_uniprotkb": "GRF5; F1N13_190", "gene_names_refseq": "F1N13.190; F1N13_190; GF14 UPSILON CHAIN; GF14 UPSILON; GRF5; general regulatory factor 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLSVAYKNVIGARRASWRII", "down_seq": "SIEQKEDSRGNSDHVSIIKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42645", "url": "https://www.uniprot.org/uniprotkb/P42645" } ], "site_lbl": "Ser69" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P42645-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42698-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "P42698-1", "length": 387, "uniprot_id": "DR111_ARATH", "protein_name": "DNA-damage-repair/toleration protein 111", "refseq_ac": "NP_174336", "refseq_name": "D111/G-patch domain-containing protein", "gene_name": "DRT111", "gene_names_uniprotkb": "DRT111; F26G16.10; RSN2; SFPS", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111; DRT111; F26G16.10; F26G16_10; REQUIRED FOR SNC4-1D 2; RSN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLNISGEEAWKRRAAMSGGG", "down_seq": "GGKGRSSSPPGNVDGFSIGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser181" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "181", "end_pos": "181" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "198", "end_pos": "198" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P42698-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P42698-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P42698-1.189.189", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P42698-1.198.198", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42698-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "P42698-1", "length": 387, "uniprot_id": "DR111_ARATH", "protein_name": "DNA-damage-repair/toleration protein 111", "refseq_ac": "NP_174336", "refseq_name": "D111/G-patch domain-containing protein", "gene_name": "DRT111", "gene_names_uniprotkb": "DRT111; F26G16.10; RSN2; SFPS", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111; DRT111; F26G16.10; F26G16_10; REQUIRED FOR SNC4-1D 2; RSN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" }, { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEAWKRRAAMSGGGSGGKGR", "down_seq": "SSPPGNVDGFSIGKSETSGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser187" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "181", "end_pos": "181" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "198", "end_pos": "198" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P42698-1.181.181", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P42698-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P42698-1.189.189", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P42698-1.198.198", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42698-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "P42698-1", "length": 387, "uniprot_id": "DR111_ARATH", "protein_name": "DNA-damage-repair/toleration protein 111", "refseq_ac": "NP_174336", "refseq_name": "D111/G-patch domain-containing protein", "gene_name": "DRT111", "gene_names_uniprotkb": "DRT111; F26G16.10; RSN2; SFPS", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111; DRT111; F26G16.10; F26G16_10; REQUIRED FOR SNC4-1D 2; RSN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" }, { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAWKRRAAMSGGGSGGKGRS", "down_seq": "SPPGNVDGFSIGKSETSGLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser188" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "181", "end_pos": "181" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "198", "end_pos": "198" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P42698-1.181.181", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P42698-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P42698-1.189.189", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P42698-1.198.198", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42698-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "P42698-1", "length": 387, "uniprot_id": "DR111_ARATH", "protein_name": "DNA-damage-repair/toleration protein 111", "refseq_ac": "NP_174336", "refseq_name": "D111/G-patch domain-containing protein", "gene_name": "DRT111", "gene_names_uniprotkb": "DRT111; F26G16.10; RSN2; SFPS", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111; DRT111; F26G16.10; F26G16_10; REQUIRED FOR SNC4-1D 2; RSN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" }, { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AWKRRAAMSGGGSGGKGRSS", "down_seq": "PPGNVDGFSIGKSETSGLGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser189" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "181", "end_pos": "181" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "198", "end_pos": "198" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P42698-1.181.181", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P42698-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P42698-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P42698-1.198.198", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42698-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "P42698-1", "length": 387, "uniprot_id": "DR111_ARATH", "protein_name": "DNA-damage-repair/toleration protein 111", "refseq_ac": "NP_174336", "refseq_name": "D111/G-patch domain-containing protein", "gene_name": "DRT111", "gene_names_uniprotkb": "DRT111; F26G16.10; RSN2; SFPS", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111; DRT111; F26G16.10; F26G16_10; REQUIRED FOR SNC4-1D 2; RSN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" }, { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGGSGGKGRSSSPPGNVDGF", "down_seq": "IGKSETSGLGVGAGGQMTAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42698", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42698" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser198" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "181", "end_pos": "181" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "198", "end_pos": "198" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P42698-1.181.181", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P42698-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P42698-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P42698-1.189.189", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42734-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P42734-1", "length": 360, "uniprot_id": "CADH9_ARATH", "protein_name": "Probable cinnamyl alcohol dehydrogenase 9", "refseq_ac": "NP_001031812", "refseq_name": "cinnamyl alcohol dehydrogenase 9", "gene_name": "CAD9", "gene_names_uniprotkb": "CAD9; CAD1; T22F8.230", "gene_names_refseq": "ATCAD9; CAD9; T22F8.230; T22F8_230; cinnamyl alcohol dehydrogenase 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42734", "url": "https://www.uniprot.org/uniprotkb/P42734" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKSPETEHPNKVFGWGARDK", "down_seq": "GVLSPFHFSRRDNGENDVTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P42734-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P42734-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P42734-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42734-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "P42734-1", "length": 360, "uniprot_id": "CADH9_ARATH", "protein_name": "Probable cinnamyl alcohol dehydrogenase 9", "refseq_ac": "NP_001031812", "refseq_name": "cinnamyl alcohol dehydrogenase 9", "gene_name": "CAD9", "gene_names_uniprotkb": "CAD9; CAD1; T22F8.230", "gene_names_refseq": "ATCAD9; CAD9; T22F8.230; T22F8_230; cinnamyl alcohol dehydrogenase 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42734", "url": "https://www.uniprot.org/uniprotkb/P42734" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETEHPNKVFGWGARDKSGVL", "down_seq": "PFHFSRRDNGENDVTVKILF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P42734-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P42734-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42734-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "P42734-1", "length": 360, "uniprot_id": "CADH9_ARATH", "protein_name": "Probable cinnamyl alcohol dehydrogenase 9", "refseq_ac": "NP_001031812", "refseq_name": "cinnamyl alcohol dehydrogenase 9", "gene_name": "CAD9", "gene_names_uniprotkb": "CAD9; CAD1; T22F8.230", "gene_names_refseq": "ATCAD9; CAD9; T22F8.230; T22F8_230; cinnamyl alcohol dehydrogenase 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42734", "url": "https://www.uniprot.org/uniprotkb/P42734" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAK", "down_seq": "PETEHPNKVFGWGARDKSGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P42734-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P42734-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42734-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "P42734-1", "length": 360, "uniprot_id": "CADH9_ARATH", "protein_name": "Probable cinnamyl alcohol dehydrogenase 9", "refseq_ac": "NP_001031812", "refseq_name": "cinnamyl alcohol dehydrogenase 9", "gene_name": "CAD9", "gene_names_uniprotkb": "CAD9; CAD1; T22F8.230", "gene_names_refseq": "ATCAD9; CAD9; T22F8.230; T22F8_230; cinnamyl alcohol dehydrogenase 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42734", "url": "https://www.uniprot.org/uniprotkb/P42734" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAKSPE", "down_seq": "EHPNKVFGWGARDKSGVLSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42734", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42734" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr7" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P42734-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P42734-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P42734-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEDIMTLEDFLAKAEMDEGA", "down_seq": "DEIDVKIPTERLNNDGSYTF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TERLNNDGSYTFDFPMQRHS", "down_seq": "FQMVEGSMGGGVTRGKRGRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "SASSSPSIRSSHHLRPNPHA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P42777-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P42777-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P42777-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P42777-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P42777-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MASFKLMSSSNSDLSRRNSS", "down_seq": "ASSSPSIRSSHHLRPNPHAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P42777-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P42777-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P42777-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P42777-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P42777-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLMSSSNSDLSRRNSSSASS", "down_seq": "PSIRSSHHLRPNPHADHSRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P42777-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P42777-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P42777-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P42777-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P42777-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLMEVLIPVDEKPRPPSRPL", "down_seq": "RSHSLEW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser263" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P42777-1.267.267", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLIPVDEKPRPPSRPLSRSH", "down_seq": "LEW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P42777-1.263.263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSSSNSDLSRRNSSSASSSP", "down_seq": "IRSSHHLRPNPHADHSRISF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P42777-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P42777-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P42777-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P42777-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P42777-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42777-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNSDLSRRNSSSASSSPSIR", "down_seq": "SHHLRPNPHADHSRISFAYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser30" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P42777-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P42777-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P42777-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P42777-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42777-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P42777-1", "length": 270, "uniprot_id": "GBF4_ARATH", "protein_name": "G-box-binding factor 4", "refseq_ac": "NP_171893", "refseq_name": "G-box binding factor 4", "gene_name": "GBF4", "gene_names_uniprotkb": "GBF4; BZIP40; F21M11.10", "gene_names_refseq": "F21M11.10; F21M11_10; G-box binding factor 4; GBF4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42777", "url": "https://www.uniprot.org/uniprotkb/P42777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MASFKLMS", "down_seq": "SNSDLSRRNSSSASSSPSIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42777" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P42777-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P42777-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P42777-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P42777-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42792-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "P42792-1", "length": 393, "uniprot_id": "CYB_ARATH", "protein_name": "Cytochrome b", "refseq_ac": "NP_178804", "refseq_name": "cytochrome b", "gene_name": "MT-CYB", "gene_names_uniprotkb": "MT-CYB; COB; CYTB; MTCYB", "gene_names_refseq": "T5E7.15; T5E7_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42792", "url": "https://www.uniprot.org/uniprotkb/P42792" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSLLKQPISSTLNQHLVDYP", "down_seq": "PSNLSYWWGFGSLAGICLVI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr28", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42794-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P42794-1", "length": 182, "uniprot_id": "RL112_ARATH", "protein_name": "Large ribosomal subunit protein uL5y/uL5x/uL5w", "refseq_ac": "NP_191429", "refseq_name": "Ribosomal L5P family protein", "gene_name": "RPL11B; RPL11C; RPL11D", "gene_names_uniprotkb": "RPL11B; RPL11C; RPL11D; F28A21.140; MRA19.26; MRA19_21; RPL16B; T20N10_50", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42794", "url": "https://www.uniprot.org/uniprotkb/P42794" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ARYTVRSFGIRRNEKIACYV", "down_seq": "VRGEKAMQLLESGLKVKEYE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42794-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "P42794-1", "length": 182, "uniprot_id": "RL112_ARATH", "protein_name": "Large ribosomal subunit protein uL5y/uL5x/uL5w", "refseq_ac": "NP_191429", "refseq_name": "Ribosomal L5P family protein", "gene_name": "RPL11B; RPL11C; RPL11D", "gene_names_uniprotkb": "RPL11B; RPL11C; RPL11D; F28A21.140; MRA19.26; MRA19_21; RPL16B; T20N10_50", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42794", "url": "https://www.uniprot.org/uniprotkb/P42794" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TKDDAMKWFQVKYEGVILNK", "down_seq": "QNITG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser177" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42794-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "P42794-1", "length": 182, "uniprot_id": "RL112_ARATH", "protein_name": "Large ribosomal subunit protein uL5y/uL5x/uL5w", "refseq_ac": "NP_191429", "refseq_name": "Ribosomal L5P family protein", "gene_name": "RPL11B; RPL11C; RPL11D", "gene_names_uniprotkb": "RPL11B; RPL11C; RPL11D; F28A21.140; MRA19.26; MRA19_21; RPL16B; T20N10_50", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42794", "url": "https://www.uniprot.org/uniprotkb/P42794" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GESGDRLTRASKVLEQLSGQ", "down_seq": "PVFSKARYTVRSFGIRRNEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42794", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42794" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr46" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42795-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P42795-1", "length": 182, "uniprot_id": "RL111_ARATH", "protein_name": "Large ribosomal subunit protein uL5z", "refseq_ac": "NP_850376", "refseq_name": "ribosomal protein large subunit 16A", "gene_name": "RPL11A", "gene_names_uniprotkb": "RPL11A; F7D19.26; RPL16A", "gene_names_refseq": "F7D19.26; F7D19_26; RPL16A; ribosomal protein large subunit 16A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42795", "url": "https://www.uniprot.org/uniprotkb/P42795" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ARYTVRSFGIRRNEKIACYV", "down_seq": "VRGEKAMQLLESGLKVKEYE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43293-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HPNLVKLIGYCLEEEHRLLV", "down_seq": "EFMTRGSLENHLFRRGTFYQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "site_lbl": "Tyr151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43293-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGLAFLHNAQPQVIYRDFKA", "down_seq": "NILLDSNYNAKLSDFGLARD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "site_lbl": "Ser207" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43293-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NYNAKLSDFGLARDGPMGDN", "down_seq": "HVSTRVMGTQGYAAPEYLAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P43293-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43293-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P43293-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P43293-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLSDFGLARDGPMGDNSHV", "down_seq": "TRVMGTQGYAAPEYLATGHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P43293-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P43293-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P43293-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P43293-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSDFGLARDGPMGDNSHVS", "down_seq": "RVMGTQGYAAPEYLATGHLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "site_lbl": "Thr238" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P43293-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P43293-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43293-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P43293-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43293-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLARDGPMGDNSHVSTRVMG", "down_seq": "QGYAAPEYLATGHLSVKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "site_lbl": "Thr243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P43293-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P43293-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P43293-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P43293-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43293-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDNSHVSTRVMGTQGYAAPE", "down_seq": "LATGHLSVKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "site_lbl": "Tyr251" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P43293-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P43293-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P43293-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P43293-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43293-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IKTDIASSTWLSSKFLSRDG", "down_seq": "KGSSTASFSYMPRTEGEILQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P43293-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43293-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43293-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P43293-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P43293-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P43293-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIASSTWLSSKFLSRDGSKG", "down_seq": "STASFSYMPRTEGEILQNAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P43293-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P43293-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P43293-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43293-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P43293-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P43293-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IASSTWLSSKFLSRDGSKGS", "down_seq": "TASFSYMPRTEGEILQNANL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P43293-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P43293-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P43293-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43293-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43293-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P43293-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ALKIAVLALDCISIDAKSRP", "down_seq": "MNEIVKTMEELHIQKEASKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr342" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ASSTWLSSKFLSRDGSKGSS", "down_seq": "ASFSYMPRTEGEILQNANLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr34" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P43293-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P43293-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P43293-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P43293-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43293-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43293-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STWLSSKFLSRDGSKGSSTA", "down_seq": "FSYMPRTEGEILQNANLKNF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser36" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P43293-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P43293-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43293-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P43293-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P43293-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43293-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEASKEQQNPQISIDNIINK", "down_seq": "PQAVNYPRPSIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser377" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WLSSKFLSRDGSKGSSTASF", "down_seq": "YMPRTEGEILQNANLKNFSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P43293-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P43293-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P43293-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P43293-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P43293-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P43293-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" }, { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LSSKFLSRDGSKGSSTASFS", "down_seq": "MPRTEGEILQNANLKNFSLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr39" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P43293-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P43293-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P43293-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P43293-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43293-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P43293-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43293-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P43293-1", "length": 389, "uniprot_id": "PBL11_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL11", "refseq_ac": "NP_195849", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL11", "gene_names_uniprotkb": "PBL11; NAK; T1E22_50", "gene_names_refseq": "NAK; PROTEIN KINASE NAK; T1E22.50; T1E22_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43293", "url": "https://www.uniprot.org/uniprotkb/P43293" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLKNFSLSELKSATRNFRPD", "down_seq": "VVGEGGFGCVFKGWIDESSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43293", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43293" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43295-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "P43295-1", "length": 361, "uniprot_id": "RD19B_ARATH", "protein_name": "Probable cysteine protease RD19B", "refseq_ac": "NP_565512", "refseq_name": "Papain family cysteine protease", "gene_name": "RD19B", "gene_names_uniprotkb": "RD19B; F3K23.19; RDL1", "gene_names_refseq": "F3K23.19; F3K23_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PILPTQNLPEEFDWRDRGAV", "down_seq": "PVKNQGSCGSCWSFSTTGAL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr145", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "250", "end_pos": "250" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "88", "end_pos": "88" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43295-1.250.250", "start_pos": 250, "end_pos": 250, "uniprot_canonical_ac": "P43295-1", "length": 361, "uniprot_id": "RD19B_ARATH", "protein_name": "Probable cysteine protease RD19B", "refseq_ac": "NP_565512", "refseq_name": "Papain family cysteine protease", "gene_name": "RD19B", "gene_names_uniprotkb": "RD19B; F3K23.19; RDL1", "gene_names_refseq": "F3K23.19; F3K23_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGTDGGSCKLDRSKIVASVS", "down_seq": "FSVVSINEDQIAANLIKNGP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn250", "evidence": [ { "id": "P43295", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43295#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "250", "end_pos": "250" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "88", "end_pos": "88" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43295-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "P43295-1", "length": 361, "uniprot_id": "RD19B_ARATH", "protein_name": "Probable cysteine protease RD19B", "refseq_ac": "NP_565512", "refseq_name": "Papain family cysteine protease", "gene_name": "RD19B", "gene_names_uniprotkb": "RD19B; F3K23.19; RDL1", "gene_names_refseq": "F3K23.19; F3K23_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43295", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43295", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RFSVFKANLLRAMRHQKMDP", "down_seq": "ARHGVTQFSDLTRSEFRRKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43295", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43295" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "250", "end_pos": "250" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "88", "end_pos": "88" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P43295-1.94.94", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43295-1.94.94", "start_pos": 94, "end_pos": 94, "uniprot_canonical_ac": "P43295-1", "length": 361, "uniprot_id": "RD19B_ARATH", "protein_name": "Probable cysteine protease RD19B", "refseq_ac": "NP_565512", "refseq_name": "Papain family cysteine protease", "gene_name": "RD19B", "gene_names_uniprotkb": "RD19B; F3K23.19; RDL1", "gene_names_refseq": "F3K23.19; F3K23_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43295", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43295", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ANLLRAMRHQKMDPSARHGV", "down_seq": "QFSDLTRSEFRRKHLGVKGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43295", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43295" } ], "site_lbl": "Thr94" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "250", "end_pos": "250" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "88", "end_pos": "88" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P43295-1.88.88", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46086-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "P46086-1", "length": 378, "uniprot_id": "KIME_ARATH", "protein_name": "Mevalonate kinase", "refseq_ac": "NP_001190411", "refseq_name": "mevalonate kinase", "gene_name": "F21A20.160", "gene_names_uniprotkb": "F21A20.160", "gene_names_refseq": "F21A20.160; F21A20_160; MEVALONATE KINASE; MK; MVK; mevalonate kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46086", "url": "https://www.uniprot.org/uniprotkb/P46086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P46086", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46086", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CSGEITRLQSNMPLRMLITN", "down_seq": "RVGRNTKALVSGVSQRAVRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46086", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46086" } ], "site_lbl": "Thr237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "237", "end_pos": "237" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46416-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "P46416-1", "length": 539, "uniprot_id": "GSHB_ARATH", "protein_name": "Glutathione synthetase, chloroplastic", "refseq_ac": "NP_568495", "refseq_name": "glutathione synthetase 2", "gene_name": "GSH2", "gene_names_uniprotkb": "GSH2; F21A20_90; GSHII", "gene_names_refseq": "AtGSH2; F21A20.90; F21A20_90; GLUTATHIONE SYNTHETASE; GSH2; GSHB; glutathione synthetase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46416", "url": "https://www.uniprot.org/uniprotkb/P46416" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SESEWNARLLIEESSAVKCP", "down_seq": "IAYHLTGSKKIQQELAKPGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "373", "end_pos": "373" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P46416-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P46416-1.373.373", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46416-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "P46416-1", "length": 539, "uniprot_id": "GSHB_ARATH", "protein_name": "Glutathione synthetase, chloroplastic", "refseq_ac": "NP_568495", "refseq_name": "glutathione synthetase 2", "gene_name": "GSH2", "gene_names_uniprotkb": "GSH2; F21A20_90; GSHII", "gene_names_refseq": "AtGSH2; F21A20.90; F21A20_90; GLUTATHIONE SYNTHETASE; GSH2; GSHB; glutathione synthetase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46416", "url": "https://www.uniprot.org/uniprotkb/P46416" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ARLLIEESSAVKCPSIAYHL", "down_seq": "GSKKIQQELAKPGVLERFLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr371" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "373", "end_pos": "373" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P46416-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P46416-1.373.373", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46416-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "P46416-1", "length": 539, "uniprot_id": "GSHB_ARATH", "protein_name": "Glutathione synthetase, chloroplastic", "refseq_ac": "NP_568495", "refseq_name": "glutathione synthetase 2", "gene_name": "GSH2", "gene_names_uniprotkb": "GSH2; F21A20_90; GSHII", "gene_names_refseq": "AtGSH2; F21A20.90; F21A20_90; GLUTATHIONE SYNTHETASE; GSH2; GSHB; glutathione synthetase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46416", "url": "https://www.uniprot.org/uniprotkb/P46416" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLIEESSAVKCPSIAYHLTG", "down_seq": "KKIQQELAKPGVLERFLDNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46416", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46416" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser373" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "373", "end_pos": "373" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P46416-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P46416-1.371.371", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46864-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "P46864-1", "length": 745, "uniprot_id": "KN14M_ARATH", "protein_name": "Kinesin-like protein KIN-14M", "refseq_ac": "NP_001328096", "refseq_name": "kinesin 2", "gene_name": "KIN14M", "gene_names_uniprotkb": "KIN14M; ATK2; KATB; T24A18.130", "gene_names_refseq": "ATK2; KATB; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B; T24A18.130; T24A18_130; kinesin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46864", "url": "https://www.uniprot.org/uniprotkb/P46864" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TNNGRIRPSFPVKDLTSNEG", "down_seq": "EYGGPVEFTREDVETLLHER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P46864-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46864-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "P46864-1", "length": 745, "uniprot_id": "KN14M_ARATH", "protein_name": "Kinesin-like protein KIN-14M", "refseq_ac": "NP_001328096", "refseq_name": "kinesin 2", "gene_name": "KIN14M", "gene_names_uniprotkb": "KIN14M; ATK2; KATB; T24A18.130", "gene_names_refseq": "ATK2; KATB; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B; T24A18.130; T24A18_130; kinesin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46864", "url": "https://www.uniprot.org/uniprotkb/P46864" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NGRIRPSFPVKDLTSNEGSE", "down_seq": "GGPVEFTREDVETLLHERIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P46864-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46864-1.743.743", "start_pos": 743, "end_pos": 743, "uniprot_canonical_ac": "P46864-1", "length": 745, "uniprot_id": "KN14M_ARATH", "protein_name": "Kinesin-like protein KIN-14M", "refseq_ac": "NP_001328096", "refseq_name": "kinesin 2", "gene_name": "KIN14M", "gene_names_uniprotkb": "KIN14M; ATK2; KATB; T24A18.130", "gene_names_refseq": "ATK2; KATB; KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B; T24A18.130; T24A18_130; kinesin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46864", "url": "https://www.uniprot.org/uniprotkb/P46864" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ACEIGTAHRHVNARPLDYRL", "down_seq": "LG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46864", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46864" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser743" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47996-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "P47996-1", "length": 503, "uniprot_id": "IMDH1_ARATH", "protein_name": "Inosine-5'-monophosphate dehydrogenase 1", "refseq_ac": "NP_178065", "refseq_name": "Aldolase-type TIM barrel family protein", "gene_name": "IMPDH", "gene_names_uniprotkb": "IMPDH; T8K14.11", "gene_names_refseq": "T8K14.11; T8K14_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P47996", "url": "https://www.uniprot.org/uniprotkb/P47996" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P47996", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47996" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P47996", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47996", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APGGYEYTNGKRIKKYRGMG", "down_seq": "LEAMTKGSDQRYLGDQTKLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P47996", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47996" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser407" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "407", "end_pos": "407" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49047-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "P49047-1", "length": 478, "uniprot_id": "VPEA_ARATH", "protein_name": "Vacuolar-processing enzyme alpha-isozyme", "refseq_ac": "", "refseq_name": "", "gene_name": "T19L18.25", "gene_names_uniprotkb": "T19L18.25", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49047", "url": "https://www.uniprot.org/uniprotkb/P49047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49047", "url": "https://www.uniprot.org/uniprotkb/P49047", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PKDYTGDEVNVDNLLAVILG", "down_seq": "KTALKGGSGKVVDSGPNDHI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn135", "evidence": [ { "id": "P49047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49047#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "321", "end_pos": "321" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49047-1.321.321", "start_pos": 321, "end_pos": 321, "uniprot_canonical_ac": "P49047-1", "length": 478, "uniprot_id": "VPEA_ARATH", "protein_name": "Vacuolar-processing enzyme alpha-isozyme", "refseq_ac": "", "refseq_name": "", "gene_name": "T19L18.25", "gene_names_uniprotkb": "T19L18.25", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49047", "url": "https://www.uniprot.org/uniprotkb/P49047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49047", "url": "https://www.uniprot.org/uniprotkb/P49047", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DIGLSKEKLVLFMGTNPADE", "down_seq": "FTFVNENSIRPPSRVTNQRD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn321", "evidence": [ { "id": "P49047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49047#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "321", "end_pos": "321" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49062-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "P49062-1", "length": 422, "uniprot_id": "PGLR1_ARATH", "protein_name": "Exopolygalacturonase", "refseq_ac": "", "refseq_name": "", "gene_name": "PGA3", "gene_names_uniprotkb": "PGA3; F22D16.22; T14P4.2; T14P4_2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KLTAPAESPNTDGIHLSNAD", "down_seq": "VSILDSTIATGDDCVSVGRG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn229", "evidence": [ { "id": "P49062", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49062#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "287", "end_pos": "287" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49062-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "P49062-1", "length": 422, "uniprot_id": "PGLR1_ARATH", "protein_name": "Exopolygalacturonase", "refseq_ac": "", "refseq_name": "", "gene_name": "PGA3", "gene_names_uniprotkb": "PGA3; F22D16.22; T14P4.2; T14P4_2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ILDSTIATGDDCVSVGRGSN", "down_seq": "VTVERVICGPGHGLSVGSLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn252", "evidence": [ { "id": "P49062", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49062#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "287", "end_pos": "287" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49062-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "P49062-1", "length": 422, "uniprot_id": "PGLR1_ARATH", "protein_name": "Exopolygalacturonase", "refseq_ac": "", "refseq_name": "", "gene_name": "PGA3", "gene_names_uniprotkb": "PGA3; F22D16.22; T14P4.2; T14P4_2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SVGSLGKYKNEEDVSGIHVN", "down_seq": "CTMIETDNGLRIKTWGGSDP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn287", "evidence": [ { "id": "P49062", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49062#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "287", "end_pos": "287" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49063-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "P49063-1", "length": 444, "uniprot_id": "PGLR2_ARATH", "protein_name": "Exopolygalacturonase", "refseq_ac": "NP_187442", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "F17A17.19", "gene_names_uniprotkb": "F17A17.19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49063", "url": "https://www.uniprot.org/uniprotkb/P49063" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49063", "url": "https://www.uniprot.org/uniprotkb/P49063", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "INSITSTNSKLFHMNILNCK", "down_seq": "ITLSDIGIDAPPESLNTDGI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn222", "evidence": [ { "id": "P49063", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49063#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "342", "end_pos": "342" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49063-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "P49063-1", "length": 444, "uniprot_id": "PGLR2_ARATH", "protein_name": "Exopolygalacturonase", "refseq_ac": "NP_187442", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "F17A17.19", "gene_names_uniprotkb": "F17A17.19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49063", "url": "https://www.uniprot.org/uniprotkb/P49063" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49063", "url": "https://www.uniprot.org/uniprotkb/P49063", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WPGSPPGIASNILFEDITMD", "down_seq": "VSLPVLIDQEYCPYGHCKAG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn342", "evidence": [ { "id": "P49063", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49063#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "342", "end_pos": "342" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49063-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P49063-1", "length": 444, "uniprot_id": "PGLR2_ARATH", "protein_name": "Exopolygalacturonase", "refseq_ac": "NP_187442", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "F17A17.19", "gene_names_uniprotkb": "F17A17.19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49063", "url": "https://www.uniprot.org/uniprotkb/P49063" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P49063", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49063" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] } ], "crossref": [ { "id": "P49063", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49063", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATAVEDTAKNAATAVGGAAA", "down_seq": "VGAKVSGAKPGAAVDVKASG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49063", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49063" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "342", "end_pos": "342" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51427-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "P51427-1", "length": 207, "uniprot_id": "RS52_ARATH", "protein_name": "Small ribosomal subunit protein uS7y", "refseq_ac": "NP_187800", "refseq_name": "ribosomal protein 5A", "gene_name": "RPS5B", "gene_names_uniprotkb": "RPS5B; AML1; F26K24.23; MEC18.4", "gene_names_refseq": "AML1; ARABIDOPSIS MINUTE-LIKE 1; ATRPS5A; MEC18.11; RPS5A; ribosomal protein 5A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51427", "url": "https://www.uniprot.org/uniprotkb/P51427" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVIIDAIVNSGPREDATRIG", "down_seq": "AGVVRRQAVDISPLRRVNQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser133" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51427-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "P51427-1", "length": 207, "uniprot_id": "RS52_ARATH", "protein_name": "Small ribosomal subunit protein uS7y", "refseq_ac": "NP_187800", "refseq_name": "ribosomal protein 5A", "gene_name": "RPS5B", "gene_names_uniprotkb": "RPS5B; AML1; F26K24.23; MEC18.4", "gene_names_refseq": "AML1; ARABIDOPSIS MINUTE-LIKE 1; ATRPS5A; MEC18.11; RPS5A; ribosomal protein 5A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51427", "url": "https://www.uniprot.org/uniprotkb/P51427" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NQAIFLITTGAREAAFRNIK", "down_seq": "IAECLADELINAAKGSSNSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" } ], "site_lbl": "Thr171" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P51427-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P51427-1", "length": 207, "uniprot_id": "RS52_ARATH", "protein_name": "Small ribosomal subunit protein uS7y", "refseq_ac": "NP_187800", "refseq_name": "ribosomal protein 5A", "gene_name": "RPS5B", "gene_names_uniprotkb": "RPS5B; AML1; F26K24.23; MEC18.4", "gene_names_refseq": "AML1; ARABIDOPSIS MINUTE-LIKE 1; ATRPS5A; MEC18.11; RPS5A; ribosomal protein 5A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51427", "url": "https://www.uniprot.org/uniprotkb/P51427" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MA", "down_seq": "AADVDAEIQQALTNEVKLFN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51427" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr3" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52032-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "P52032-1", "length": 236, "uniprot_id": "GPX1_ARATH", "protein_name": "Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic", "refseq_ac": "NP_180080", "refseq_name": "glutathione peroxidase 1", "gene_name": "GPX1", "gene_names_uniprotkb": "GPX1; F13D4.40", "gene_names_refseq": "ATGPX1; F13D4.40; F13D4_40; GLUTATHIONE PEROXIDASE 1; GPX1; glutathione peroxidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P52032", "url": "https://www.uniprot.org/uniprotkb/P52032" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P52032", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52032" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P52032", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52032", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ACTRFKAEFPIFDKVDVNGP", "down_seq": "TAPIYEFLKSNAGGFLGGLI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P52032", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52032" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P53496-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "P53496-1", "length": 377, "uniprot_id": "ACT11_ARATH", "protein_name": "Actin-11", "refseq_ac": "NP_187818", "refseq_name": "actin-11", "gene_name": "ACT11", "gene_names_uniprotkb": "ACT11; T21B14.7; T21B14_108; T23B7.5", "gene_names_refseq": "ACT11; actin-11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P53496", "url": "https://www.uniprot.org/uniprotkb/P53496" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTMFPGIADRMSKEITALAP", "down_seq": "SMKIKVVAPPERKYSVWIGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser325" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "62", "end_pos": "62" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P53496-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P53496-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "P53496-1", "length": 377, "uniprot_id": "ACT11_ARATH", "protein_name": "Actin-11", "refseq_ac": "NP_187818", "refseq_name": "actin-11", "gene_name": "ACT11", "gene_names_uniprotkb": "ACT11; T21B14.7; T21B14_108; T23B7.5", "gene_names_refseq": "ACT11; actin-11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P53496", "url": "https://www.uniprot.org/uniprotkb/P53496" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TMFPGIADRMSKEITALAPS", "down_seq": "MKIKVVAPPERKYSVWIGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser326" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "62", "end_pos": "62" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P53496-1.325.325", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P53496-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "P53496-1", "length": 377, "uniprot_id": "ACT11_ARATH", "protein_name": "Actin-11", "refseq_ac": "NP_187818", "refseq_name": "actin-11", "gene_name": "ACT11", "gene_names_uniprotkb": "ACT11; T21B14.7; T21B14_108; T23B7.5", "gene_names_refseq": "ACT11; actin-11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P53496", "url": "https://www.uniprot.org/uniprotkb/P53496" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HTGVMVGMGQKDAYVGDEAQ", "down_seq": "KRGILTLKYPIEHGIVSNWD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P53496", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53496" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "62", "end_pos": "62" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55231-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "P55231-1", "length": 521, "uniprot_id": "GLGL3_ARATH", "protein_name": "Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic", "refseq_ac": "NP_001328715", "refseq_name": "Glucose-1-phosphate adenylyltransferase family protein", "gene_name": "APL3", "gene_names_uniprotkb": "APL3; T22F8.110", "gene_names_refseq": "APL3; T22F8.110; T22F8_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55231", "url": "https://www.uniprot.org/uniprotkb/P55231" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEVLAATQTPGEAGKKWFQG", "down_seq": "ADAVRKFLWVFEDAKNRNIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr189" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55231-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "P55231-1", "length": 521, "uniprot_id": "GLGL3_ARATH", "protein_name": "Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic", "refseq_ac": "NP_001328715", "refseq_name": "Glucose-1-phosphate adenylyltransferase family protein", "gene_name": "APL3", "gene_names_uniprotkb": "APL3; T22F8.110", "gene_names_refseq": "APL3; T22F8.110; T22F8_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55231", "url": "https://www.uniprot.org/uniprotkb/P55231" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVAYAIATSKNAKEALKNQP", "down_seq": "MFERRRADPKNVAAIILGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P55231", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55231" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56753-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "P56753-1", "length": 393, "uniprot_id": "NDHH_ARATH", "protein_name": "NAD(P)H-quinone oxidoreductase subunit H, chloroplastic", "refseq_ac": "NP_051115", "refseq_name": "NADH dehydrogenase subunit 7", "gene_name": "ndhH", "gene_names_uniprotkb": "ndhH", "gene_names_refseq": "ndhH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56753", "url": "https://www.uniprot.org/uniprotkb/P56753" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P56753", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56753" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P56753", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56753", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IQWQKQGDSLARYLVRLSEM", "down_seq": "ESIKIIQQALEGLPGGPYEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56753", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56753" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr269" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P56753-1.271.271", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56753-1.271.271", "start_pos": 271, "end_pos": 271, "uniprot_canonical_ac": "P56753-1", "length": 393, "uniprot_id": "NDHH_ARATH", "protein_name": "NAD(P)H-quinone oxidoreductase subunit H, chloroplastic", "refseq_ac": "NP_051115", "refseq_name": "NADH dehydrogenase subunit 7", "gene_name": "ndhH", "gene_names_uniprotkb": "ndhH", "gene_names_refseq": "ndhH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56753", "url": "https://www.uniprot.org/uniprotkb/P56753" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P56753", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56753" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P56753", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56753", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WQKQGDSLARYLVRLSEMTE", "down_seq": "IKIIQQALEGLPGGPYENLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56753", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56753" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser271" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P56753-1.269.269", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56756-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "P56756-1", "length": 225, "uniprot_id": "NDHK_ARATH", "protein_name": "NAD(P)H-quinone oxidoreductase subunit K, chloroplastic", "refseq_ac": "NP_051063", "refseq_name": "NADH dehydrogenase subunit K", "gene_name": "ndhK", "gene_names_uniprotkb": "ndhK; psbG", "gene_names_refseq": "ndhK", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56756", "url": "https://www.uniprot.org/uniprotkb/P56756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P56756", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56756" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P56756", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56756", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MNSIKFPILDR", "down_seq": "TKNSVISTTLNDLSNWSRLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56756", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56756" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56767-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P56767-1", "length": 734, "uniprot_id": "PSAB_ARATH", "protein_name": "Photosystem I P700 chlorophyll a apoprotein A2", "refseq_ac": "NP_051058", "refseq_name": "photosystem I P700 chlorophyll a apoprotein A2", "gene_name": "psaB", "gene_names_uniprotkb": "psaB", "gene_names_refseq": "psaB", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56767", "url": "https://www.uniprot.org/uniprotkb/P56767" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P56767", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56767" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P56767", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56767", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MALRFPRF", "down_seq": "QGLAQDPTTRRIWFGIATAH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56767", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56767" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56771-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "P56771-1", "length": 320, "uniprot_id": "CYF_ARATH", "protein_name": "Cytochrome f", "refseq_ac": "NP_051072", "refseq_name": "cytochrome f", "gene_name": "petA", "gene_names_uniprotkb": "petA", "gene_names_refseq": "petA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56771", "url": "https://www.uniprot.org/uniprotkb/P56771" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P56771", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56771", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKYPIYVGGNRGRGQIYPDG", "down_seq": "KSNNTVYNATAGGIISKILR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56771", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56771" } ], "site_lbl": "Ser199" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "199", "end_pos": "199" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P56777-1.271.271", "start_pos": 271, "end_pos": 271, "uniprot_canonical_ac": "P56777-1", "length": 508, "uniprot_id": "PSBB_ARATH", "protein_name": "Photosystem II CP47 reaction center protein", "refseq_ac": "NP_051084", "refseq_name": "photosystem II 47 kDa protein", "gene_name": "psbB", "gene_names_uniprotkb": "psbB", "gene_names_refseq": "psbB", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56777", "url": "https://www.uniprot.org/uniprotkb/P56777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VVAGTMWYGSATTPIELFGP", "down_seq": "RYQWDQGYFQQEIYRRVSAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" } ], "site_lbl": "Thr271" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "271", "end_pos": "271" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "503", "end_pos": "503" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P56777-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "P56777-1", "length": 508, "uniprot_id": "PSBB_ARATH", "protein_name": "Photosystem II CP47 reaction center protein", "refseq_ac": "NP_051084", "refseq_name": "photosystem II 47 kDa protein", "gene_name": "psbB", "gene_names_uniprotkb": "psbB", "gene_names_refseq": "psbB", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56777", "url": "https://www.uniprot.org/uniprotkb/P56777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LAENQSLSEAWAKIPEKLAF", "down_seq": "DYIGNNPAKGGLFRAGSMDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr312" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "271", "end_pos": "271" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "503", "end_pos": "503" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "P56777-1.329.329", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56777-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "P56777-1", "length": 508, "uniprot_id": "PSBB_ARATH", "protein_name": "Photosystem II CP47 reaction center protein", "refseq_ac": "NP_051084", "refseq_name": "photosystem II 47 kDa protein", "gene_name": "psbB", "gene_names_uniprotkb": "psbB", "gene_names_refseq": "psbB", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56777", "url": "https://www.uniprot.org/uniprotkb/P56777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAFYDYIGNNPAKGGLFRAG", "down_seq": "MDNGDGIAVGWLGHPVFRNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser329" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "271", "end_pos": "271" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "503", "end_pos": "503" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P56777-1.312.312", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56777-1.503.503", "start_pos": 503, "end_pos": 503, "uniprot_canonical_ac": "P56777-1", "length": 508, "uniprot_id": "PSBB_ARATH", "protein_name": "Photosystem II CP47 reaction center protein", "refseq_ac": "NP_051084", "refseq_name": "photosystem II 47 kDa protein", "gene_name": "psbB", "gene_names_uniprotkb": "psbB", "gene_names_refseq": "psbB", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56777", "url": "https://www.uniprot.org/uniprotkb/P56777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DPDLDAQVEFGAFQKLGDPT", "down_seq": "KRQAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56777", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56777" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr503" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "271", "end_pos": "271" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "503", "end_pos": "503" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56786-1.1954.1954", "start_pos": 1954, "end_pos": 1954, "uniprot_canonical_ac": "P56786-1", "length": 2294, "uniprot_id": "YCF2_ARATH", "protein_name": "Protein Ycf2", "refseq_ac": "", "refseq_name": "", "gene_name": "ycf2-A; ycf2-B", "gene_names_uniprotkb": "ycf2-A; ycf2-B; ycf2-1; ycf2-2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56786", "url": "https://www.uniprot.org/uniprotkb/P56786" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] } ], "crossref": [ { "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KKKSCNEGDSYLYKWYFELG", "down_seq": "SMKKFTILLYLLSCSAGSVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ], "site_lbl": "Thr1954" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1954", "end_pos": "1954" }, { "start_pos": "1955", "end_pos": "1955" }, { "start_pos": "2277", "end_pos": "2277" }, { "start_pos": "532", "end_pos": "532" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P56786-1.1955.1955", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56786-1.1955.1955", "start_pos": 1955, "end_pos": 1955, "uniprot_canonical_ac": "P56786-1", "length": 2294, "uniprot_id": "YCF2_ARATH", "protein_name": "Protein Ycf2", "refseq_ac": "", "refseq_name": "", "gene_name": "ycf2-A; ycf2-B", "gene_names_uniprotkb": "ycf2-A; ycf2-B; ycf2-1; ycf2-2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56786", "url": "https://www.uniprot.org/uniprotkb/P56786" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] } ], "crossref": [ { "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKSCNEGDSYLYKWYFELGT", "down_seq": "MKKFTILLYLLSCSAGSVAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ], "site_lbl": "Ser1955" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1954", "end_pos": "1954" }, { "start_pos": "1955", "end_pos": "1955" }, { "start_pos": "2277", "end_pos": "2277" }, { "start_pos": "532", "end_pos": "532" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P56786-1.1954.1954", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56786-1.2277.2277", "start_pos": 2277, "end_pos": 2277, "uniprot_canonical_ac": "P56786-1", "length": 2294, "uniprot_id": "YCF2_ARATH", "protein_name": "Protein Ycf2", "refseq_ac": "", "refseq_name": "", "gene_name": "ycf2-A; ycf2-B", "gene_names_uniprotkb": "ycf2-A; ycf2-B; ycf2-1; ycf2-2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56786", "url": "https://www.uniprot.org/uniprotkb/P56786" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YQYLSNLFISNGTLLDRMTK", "down_seq": "LLKKRWLFSDEMKIGFM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" } ], "site_lbl": "Thr2277" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1954", "end_pos": "1954" }, { "start_pos": "1955", "end_pos": "1955" }, { "start_pos": "2277", "end_pos": "2277" }, { "start_pos": "532", "end_pos": "532" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P56786-1.532.532", "start_pos": 532, "end_pos": 532, "uniprot_canonical_ac": "P56786-1", "length": 2294, "uniprot_id": "YCF2_ARATH", "protein_name": "Protein Ycf2", "refseq_ac": "", "refseq_name": "", "gene_name": "ycf2-A; ycf2-B", "gene_names_uniprotkb": "ycf2-A; ycf2-B; ycf2-1; ycf2-2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56786", "url": "https://www.uniprot.org/uniprotkb/P56786" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERSTRDQKLLKKEQDVSFVP", "down_seq": "RRSENKEIVNIFKIITYLQN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56786", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56786" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser532" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1954", "end_pos": "1954" }, { "start_pos": "1955", "end_pos": "1955" }, { "start_pos": "2277", "end_pos": "2277" }, { "start_pos": "532", "end_pos": "532" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56820-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "P56820-1", "length": 591, "uniprot_id": "EIF3D_ARATH", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "refseq_ac": "NP_001031683", "refseq_name": "Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)", "gene_name": "TIF3D1", "gene_names_uniprotkb": "TIF3D1; T13K14.140", "gene_names_refseq": "T13K14.140; T13K14_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LVARCELQSVADLNNQRSFL", "down_seq": "LNALNEFDPKYSGVDWRQKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr412" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56820-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "P56820-1", "length": 591, "uniprot_id": "EIF3D_ARATH", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "refseq_ac": "NP_001031683", "refseq_name": "Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)", "gene_name": "TIF3D1", "gene_names_uniprotkb": "TIF3D1; T13K14.140", "gene_names_refseq": "T13K14.140; T13K14_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" }, { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FASFSRSDKLGRVADWTRNL", "down_seq": "NPSARPNTGSKSDPSAVFDF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser66" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P56820-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P56820-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P56820-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56820-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P56820-1", "length": 591, "uniprot_id": "EIF3D_ARATH", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "refseq_ac": "NP_001031683", "refseq_name": "Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)", "gene_name": "TIF3D1", "gene_names_uniprotkb": "TIF3D1; T13K14.140", "gene_names_refseq": "T13K14.140; T13K14_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" }, { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSRSDKLGRVADWTRNLSNP", "down_seq": "ARPNTGSKSDPSAVFDFSAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser69" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P56820-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P56820-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P56820-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56820-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "P56820-1", "length": 591, "uniprot_id": "EIF3D_ARATH", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "refseq_ac": "NP_001031683", "refseq_name": "Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)", "gene_name": "TIF3D1", "gene_names_uniprotkb": "TIF3D1; T13K14.140", "gene_names_refseq": "T13K14.140; T13K14_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" }, { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLGRVADWTRNLSNPSARPN", "down_seq": "GSKSDPSAVFDFSAFAIDEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr74" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P56820-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P56820-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P56820-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P56820-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "P56820-1", "length": 591, "uniprot_id": "EIF3D_ARATH", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "refseq_ac": "NP_001031683", "refseq_name": "Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)", "gene_name": "TIF3D1", "gene_names_uniprotkb": "TIF3D1; T13K14.140", "gene_names_refseq": "T13K14.140; T13K14_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" }, { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRVADWTRNLSNPSARPNTG", "down_seq": "KSDPSAVFDFSAFAIDEGFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56820", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56820" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P56820-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P56820-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P56820-1.74.74", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57106-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "P57106-1", "length": 332, "uniprot_id": "MDHC2_ARATH", "protein_name": "Malate dehydrogenase 2, cytoplasmic", "refseq_ac": "", "refseq_name": "", "gene_name": "MDH2", "gene_names_uniprotkb": "MDH2; MWF20.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57106", "url": "https://www.uniprot.org/uniprotkb/P57106" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLVVANPANTNALILKEFAP", "down_seq": "IPEKNITCLTRLDHNRALGQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57106-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "P57106-1", "length": 332, "uniprot_id": "MDHC2_ARATH", "protein_name": "Malate dehydrogenase 2, cytoplasmic", "refseq_ac": "", "refseq_name": "", "gene_name": "MDH2", "gene_names_uniprotkb": "MDH2; MWF20.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57106", "url": "https://www.uniprot.org/uniprotkb/P57106" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITCLTRLDHNRALGQVSERL", "down_seq": "VPVSDVKNVIIWGNHSSTQY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser173" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57106-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "P57106-1", "length": 332, "uniprot_id": "MDHC2_ARATH", "protein_name": "Malate dehydrogenase 2, cytoplasmic", "refseq_ac": "", "refseq_name": "", "gene_name": "MDH2", "gene_names_uniprotkb": "MDH2; MWF20.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57106", "url": "https://www.uniprot.org/uniprotkb/P57106" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEFISTVQQRGAAIIKARKL", "down_seq": "SALSAASSACDHIRDWVVGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P57106-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P57106-1.246.246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57106-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "P57106-1", "length": 332, "uniprot_id": "MDHC2_ARATH", "protein_name": "Malate dehydrogenase 2, cytoplasmic", "refseq_ac": "", "refseq_name": "", "gene_name": "MDH2", "gene_names_uniprotkb": "MDH2; MWF20.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57106", "url": "https://www.uniprot.org/uniprotkb/P57106" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EFISTVQQRGAAIIKARKLS", "down_seq": "ALSAASSACDHIRDWVVGTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P57106-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P57106-1.246.246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57106-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "P57106-1", "length": 332, "uniprot_id": "MDHC2_ARATH", "protein_name": "Malate dehydrogenase 2, cytoplasmic", "refseq_ac": "", "refseq_name": "", "gene_name": "MDH2", "gene_names_uniprotkb": "MDH2; MWF20.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57106", "url": "https://www.uniprot.org/uniprotkb/P57106" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STVQQRGAAIIKARKLSSAL", "down_seq": "AASSACDHIRDWVVGTPEGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57106", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57106" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser246" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P57106-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P57106-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57681-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "P57681-1", "length": 500, "uniprot_id": "PCYOX_ARATH", "protein_name": "Farnesylcysteine lyase", "refseq_ac": "NP_201196", "refseq_name": "farnesylcysteine lyase", "gene_name": "FCLY", "gene_names_uniprotkb": "FCLY; MGI19.11; MGI19.4", "gene_names_refseq": "FCLY; MGI19.4; MGI19_4; farnesylcysteine lyase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AGGSILHPKNYHVKDFVERF", "down_seq": "LTVRLPTPIEESSAIGIWDG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn113", "evidence": [ { "id": "P57681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P57681#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P57681-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "P57681-1", "length": 500, "uniprot_id": "PCYOX_ARATH", "protein_name": "Farnesylcysteine lyase", "refseq_ac": "NP_201196", "refseq_name": "farnesylcysteine lyase", "gene_name": "FCLY", "gene_names_uniprotkb": "FCLY; MGI19.11; MGI19.4", "gene_names_refseq": "FCLY; MGI19.4; MGI19_4; farnesylcysteine lyase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LESRPIFDNVEGMLKWSGLY", "down_seq": "LTKLTLQEKLSEAQLSPLLV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "P57681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P57681#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P57681-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "P57681-1", "length": 500, "uniprot_id": "PCYOX_ARATH", "protein_name": "Farnesylcysteine lyase", "refseq_ac": "NP_201196", "refseq_name": "farnesylcysteine lyase", "gene_name": "FCLY", "gene_names_uniprotkb": "FCLY; MGI19.11; MGI19.4", "gene_names_refseq": "FCLY; MGI19.4; MGI19_4; farnesylcysteine lyase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGGGLWSVEGGNWQMAAKLI", "down_seq": "HSDVTLHLNEKIESISYLEN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn281", "evidence": [ { "id": "P57681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P57681#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P57681-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P57681-1", "length": 500, "uniprot_id": "PCYOX_ARATH", "protein_name": "Farnesylcysteine lyase", "refseq_ac": "NP_201196", "refseq_name": "farnesylcysteine lyase", "gene_name": "FCLY", "gene_names_uniprotkb": "FCLY; MGI19.11; MGI19.4", "gene_names_refseq": "FCLY; MGI19.4; MGI19_4; farnesylcysteine lyase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P57681", "url": "https://www.uniprot.org/uniprotkb/P57681", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ATVCIVGSGIGGSSVAHFLR", "down_seq": "YSVSTGLNQAKILMFERHEI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "P57681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P57681#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P57750-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "P57750-1", "length": 556, "uniprot_id": "AGM1_ARATH", "protein_name": "Phosphoacetylglucosamine mutase", "refseq_ac": "NP_568359", "refseq_name": "phosphoglucosamine mutase-like protein", "gene_name": "DRT101", "gene_names_uniprotkb": "DRT101; MRG7.2", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION 101; DRT101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57750", "url": "https://www.uniprot.org/uniprotkb/P57750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GILSALRSLKLGSATVGLMI", "down_seq": "ASHNKVSDNGIKVSDPSGFM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr66" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "66", "end_pos": "66" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P57750-1.68.68", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57750-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "P57750-1", "length": 556, "uniprot_id": "AGM1_ARATH", "protein_name": "Phosphoacetylglucosamine mutase", "refseq_ac": "NP_568359", "refseq_name": "phosphoglucosamine mutase-like protein", "gene_name": "DRT101", "gene_names_uniprotkb": "DRT101; MRG7.2", "gene_names_refseq": "DNA-DAMAGE-REPAIR/TOLERATION 101; DRT101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57750", "url": "https://www.uniprot.org/uniprotkb/P57750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P57750", "url": "https://www.uniprot.org/uniprotkb/P57750" }, { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P57750", "url": "https://www.uniprot.org/uniprotkb/P57750", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSALRSLKLGSATVGLMITA", "down_seq": "HNKVSDNGIKVSDPSGFMLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P57750", "url": "https://www.uniprot.org/uniprotkb/P57750" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "P57750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57750" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser68" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "66", "end_pos": "66" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P57750-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59120-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "P59120-1", "length": 329, "uniprot_id": "PER58_ARATH", "protein_name": "Peroxidase 58", "refseq_ac": "NP_197488", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER58", "gene_names_uniprotkb": "PER58; F28I16.30; P58", "gene_names_refseq": "F28I16.30; F28I16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59120", "url": "https://www.uniprot.org/uniprotkb/P59120" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P59120", "url": "https://www.uniprot.org/uniprotkb/P59120", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSGAHTFGRVQCGVINNRLH", "down_seq": "FSGNSGQSDPSIEPEFLQTL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "P59120", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P59120#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "36", "end_pos": "36" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P59120-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "P59120-1", "length": 329, "uniprot_id": "PER58_ARATH", "protein_name": "Peroxidase 58", "refseq_ac": "NP_197488", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER58", "gene_names_uniprotkb": "PER58; F28I16.30; P58", "gene_names_refseq": "F28I16.30; F28I16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59120", "url": "https://www.uniprot.org/uniprotkb/P59120" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P59120", "url": "https://www.uniprot.org/uniprotkb/P59120", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MFGVLSNAQLTSDFYSTTCP", "down_seq": "VTAIARGLIERASRNDVRLT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn36", "evidence": [ { "id": "P59120", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P59120#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "36", "end_pos": "36" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P59224-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P59224-1", "length": 151, "uniprot_id": "RS132_ARATH", "protein_name": "Small ribosomal subunit protein uS15y", "refseq_ac": "NP_567151", "refseq_name": "ribosomal protein S13A", "gene_name": "RPS13B", "gene_names_uniprotkb": "RPS13B; F6N15.7", "gene_names_refseq": "ATRPS13A; F6N15.7; F6N15_7; PFL2; POINTED FIRST LEAF 2; RIBOSOMAL PROTEIN S13; RPS13A; RPS13; ribosomal protein S13A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59224", "url": "https://www.uniprot.org/uniprotkb/P59224" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRMHSRGKGISASALPYKRS", "down_seq": "PSWLKTTSQDVDESICKFAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P59224-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P59224-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59224-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "P59224-1", "length": 151, "uniprot_id": "RS132_ARATH", "protein_name": "Small ribosomal subunit protein uS15y", "refseq_ac": "NP_567151", "refseq_name": "ribosomal protein S13A", "gene_name": "RPS13B", "gene_names_uniprotkb": "RPS13B; F6N15.7", "gene_names_refseq": "ATRPS13A; F6N15.7; F6N15_7; PFL2; POINTED FIRST LEAF 2; RIBOSOMAL PROTEIN S13; RPS13A; RPS13; ribosomal protein S13A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59224", "url": "https://www.uniprot.org/uniprotkb/P59224" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KGISASALPYKRSSPSWLKT", "down_seq": "SQDVDESICKFAKKGLTPSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P59224-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P59224-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59224-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "P59224-1", "length": 151, "uniprot_id": "RS132_ARATH", "protein_name": "Small ribosomal subunit protein uS15y", "refseq_ac": "NP_567151", "refseq_name": "ribosomal protein S13A", "gene_name": "RPS13B", "gene_names_uniprotkb": "RPS13B; F6N15.7", "gene_names_refseq": "ATRPS13A; F6N15.7; F6N15_7; PFL2; POINTED FIRST LEAF 2; RIBOSOMAL PROTEIN S13; RPS13A; RPS13; ribosomal protein S13A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59224", "url": "https://www.uniprot.org/uniprotkb/P59224" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GISASALPYKRSSPSWLKTT", "down_seq": "QDVDESICKFAKKGLTPSQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59224", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59224" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser30" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P59224-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P59224-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59232-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P59232-1", "length": 157, "uniprot_id": "R27AB_ARATH", "protein_name": "Ubiquitin-ribosomal protein eS31y fusion protein", "refseq_ac": "NP_001189768", "refseq_name": "ubiquitin 6", "gene_name": "RPS27AB", "gene_names_uniprotkb": "RPS27AB; F14M4.6; UBQ6", "gene_names_refseq": "F14M4.6; UBI6; UBIQUITIN EXTENSION PROTEIN 6; UBQ6; ubiquitin 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59232", "url": "https://www.uniprot.org/uniprotkb/P59232" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P59232", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59232" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P59232", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59232", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FAGKQLEDGRTLADYNIQKE", "down_seq": "TLHLVLRLRGGAKKRKKKTY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59232", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59232" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61841-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "P61841-1", "length": 155, "uniprot_id": "RR7_ARATH", "protein_name": "Small ribosomal subunit protein uS7cz/uS7cy", "refseq_ac": "", "refseq_name": "", "gene_name": "rps7-A; rps7-B", "gene_names_uniprotkb": "rps7-A; rps7-B; rps7-1; rps7-2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P61841", "url": "https://www.uniprot.org/uniprotkb/P61841" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAVKARRVGGSTHQVPIEIG", "down_seq": "TQGKALAIRWLLGASRKRPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "93", "end_pos": "93" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P61841-1.94.94", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61841-1.94.94", "start_pos": 94, "end_pos": 94, "uniprot_canonical_ac": "P61841-1", "length": 155, "uniprot_id": "RR7_ARATH", "protein_name": "Small ribosomal subunit protein uS7cz/uS7cy", "refseq_ac": "", "refseq_name": "", "gene_name": "rps7-A; rps7-B", "gene_names_uniprotkb": "rps7-A; rps7-B; rps7-1; rps7-2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P61841", "url": "https://www.uniprot.org/uniprotkb/P61841" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P61841", "url": "https://www.uniprot.org/uniprotkb/P61841" }, { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AVKARRVGGSTHQVPIEIGS", "down_seq": "QGKALAIRWLLGASRKRPGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P61841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P61841" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr94" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "93", "end_pos": "93" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P61841-1.93.93", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P68209-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "P68209-1", "length": 347, "uniprot_id": "SUCA1_ARATH", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "F8L15_30", "gene_names_uniprotkb": "F8L15_30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P68209", "url": "https://www.uniprot.org/uniprotkb/P68209" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GPNCPGIIKPGECKIGIMPG", "down_seq": "IHKPGKIGIVSRSGTLTYEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" } ], "site_lbl": "Tyr191" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "191", "end_pos": "191" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P68209-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "P68209-1", "length": 347, "uniprot_id": "SUCA1_ARATH", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "F8L15_30", "gene_names_uniprotkb": "F8L15_30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P68209", "url": "https://www.uniprot.org/uniprotkb/P68209" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FIAGLTAPPGRRMGHAGAIV", "down_seq": "GGKGTAQDKIKSLNDAGVKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser304" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "191", "end_pos": "191" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P68209-1.309.309", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P68209-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "P68209-1", "length": 347, "uniprot_id": "SUCA1_ARATH", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "F8L15_30", "gene_names_uniprotkb": "F8L15_30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P68209", "url": "https://www.uniprot.org/uniprotkb/P68209" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TAPPGRRMGHAGAIVSGGKG", "down_seq": "AQDKIKSLNDAGVKVVESPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr309" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "191", "end_pos": "191" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P68209-1.304.304", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P68209-1.336.336", "start_pos": 336, "end_pos": 336, "uniprot_canonical_ac": "P68209-1", "length": 347, "uniprot_id": "SUCA1_ARATH", "protein_name": "Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "F8L15_30", "gene_names_uniprotkb": "F8L15_30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P68209", "url": "https://www.uniprot.org/uniprotkb/P68209" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SLNDAGVKVVESPAKIGSAM", "down_seq": "ELFQERGLLKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P68209", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P68209" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Tyr336" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "191", "end_pos": "191" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P83483-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "P83483-1", "length": 556, "uniprot_id": "ATPBM_ARATH", "protein_name": "ATP synthase subunit beta-1, mitochondrial", "refseq_ac": "NP_568204", "refseq_name": "ATP synthase alpha/beta family protein", "gene_name": "T2K12.11", "gene_names_uniprotkb": "T2K12.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P83483", "url": "https://www.uniprot.org/uniprotkb/P83483" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P83483", "url": "https://www.uniprot.org/uniprotkb/P83483", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APCSYLLGRVAEYATSSPAS", "down_seq": "AAPSSAPAKDEGKKTYDYGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P83483", "url": "https://www.uniprot.org/uniprotkb/P83483" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92942-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "P92942-1", "length": 780, "uniprot_id": "CLCB_ARATH", "protein_name": "Chloride channel protein CLC-b", "refseq_ac": "NP_189353", "refseq_name": "chloride channel B", "gene_name": "CLC-B", "gene_names_uniprotkb": "CLC-B; CBSCLC7; MYF5.4", "gene_names_refseq": "ATCLC-B; CLC-B; chloride channel B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92942", "url": "https://www.uniprot.org/uniprotkb/P92942" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGDPESNTLNQPLVKANRTL", "down_seq": "STPLALVGAKVSHIESLDYE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "39", "end_pos": "39" }, { "start_pos": "561", "end_pos": "561" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92942-1.561.561", "start_pos": 561, "end_pos": 561, "uniprot_canonical_ac": "P92942-1", "length": 780, "uniprot_id": "CLCB_ARATH", "protein_name": "Chloride channel protein CLC-b", "refseq_ac": "NP_189353", "refseq_name": "chloride channel B", "gene_name": "CLC-B", "gene_names_uniprotkb": "CLC-B; CBSCLC7; MYF5.4", "gene_names_refseq": "ATCLC-B; CLC-B; chloride channel B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92942", "url": "https://www.uniprot.org/uniprotkb/P92942" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPITMIVLLIAKTVGDSFNP", "down_seq": "IYDIILHLKGLPFLEANPEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92942", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92942" } ], "site_lbl": "Ser561" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "39", "end_pos": "39" }, { "start_pos": "561", "end_pos": "561" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92946-1.250.250", "start_pos": 250, "end_pos": 250, "uniprot_canonical_ac": "P92946-1", "length": 677, "uniprot_id": "SUT22_ARATH", "protein_name": "Sulfate transporter 2.2", "refseq_ac": "NP_565165", "refseq_name": "STAS domain / Sulfate transporter family", "gene_name": "2; SULTR2", "gene_names_uniprotkb": "2; SULTR2; F28K19.21", "gene_names_refseq": "2; AST56; SULPHATE TRANSPORTER 2; SULTR2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92946", "url": "https://www.uniprot.org/uniprotkb/P92946" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92946", "url": "https://www.uniprot.org/uniprotkb/P92946", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AAIVIGLQQLKGLFGLTHFT", "down_seq": "KTDVVSVLSSVFHSLHHPWQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn250", "evidence": [ { "id": "P92946", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92946#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "250", "end_pos": "250" }, { "start_pos": "418", "end_pos": "418" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92946-1.418.418", "start_pos": 418, "end_pos": 418, "uniprot_canonical_ac": "P92946-1", "length": 677, "uniprot_id": "SUT22_ARATH", "protein_name": "Sulfate transporter 2.2", "refseq_ac": "NP_565165", "refseq_name": "STAS domain / Sulfate transporter family", "gene_name": "2; SULTR2", "gene_names_uniprotkb": "2; SULTR2; F28K19.21", "gene_names_refseq": "2; AST56; SULPHATE TRANSPORTER 2; SULTR2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92946", "url": "https://www.uniprot.org/uniprotkb/P92946" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92946", "url": "https://www.uniprot.org/uniprotkb/P92946", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IAGSLSSCYVATGSFSRTAV", "down_seq": "FSAGCETVVSNIVMAITVMI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn418", "evidence": [ { "id": "P92946", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92946#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "250", "end_pos": "250" }, { "start_pos": "418", "end_pos": "418" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92946-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "P92946-1", "length": 677, "uniprot_id": "SUT22_ARATH", "protein_name": "Sulfate transporter 2.2", "refseq_ac": "NP_565165", "refseq_name": "STAS domain / Sulfate transporter family", "gene_name": "2; SULTR2", "gene_names_uniprotkb": "2; SULTR2; F28K19.21", "gene_names_refseq": "2; AST56; SULPHATE TRANSPORTER 2; SULTR2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92946", "url": "https://www.uniprot.org/uniprotkb/P92946" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92946" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P92946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92946", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGAFQAIFGLFRLGFLVDFL", "down_seq": "HAALVGFMAGAAIVIGLQQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92946", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92946" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser219" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "250", "end_pos": "250" }, { "start_pos": "418", "end_pos": "418" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92976-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "P92976-1", "length": 329, "uniprot_id": "SSL11_ARATH", "protein_name": "Protein STRICTOSIDINE SYNTHASE-LIKE 11", "refseq_ac": "NP_177540", "refseq_name": "strictosidine synthase 3", "gene_name": "SSL11", "gene_names_uniprotkb": "SSL11; F2P9.13; SS12; SS3", "gene_names_refseq": "ATSS-3 STRICTOSIDINE SYNTHASE; F2P9.13; F2P9_13; SS3; strictosidine synthase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92976", "url": "https://www.uniprot.org/uniprotkb/P92976" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IADSVGGKPFLFLDGLDVDP", "down_seq": "TGVVYFTSFSSTFGPRDVLK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr155", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92976-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "P92976-1", "length": 329, "uniprot_id": "SSL11_ARATH", "protein_name": "Protein STRICTOSIDINE SYNTHASE-LIKE 11", "refseq_ac": "NP_177540", "refseq_name": "strictosidine synthase 3", "gene_name": "SSL11", "gene_names_uniprotkb": "SSL11; F2P9.13; SS12; SS3", "gene_names_refseq": "ATSS-3 STRICTOSIDINE SYNTHASE; F2P9.13; F2P9_13; SS3; strictosidine synthase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92976", "url": "https://www.uniprot.org/uniprotkb/P92976" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92976", "url": "https://www.uniprot.org/uniprotkb/P92976", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FSSSVLSTKKSSFQKLPVPG", "down_seq": "RTGPEAFAFDSTGKGFYTGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn37", "evidence": [ { "id": "P92976", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92976#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92976-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "P92976-1", "length": 329, "uniprot_id": "SSL11_ARATH", "protein_name": "Protein STRICTOSIDINE SYNTHASE-LIKE 11", "refseq_ac": "NP_177540", "refseq_name": "strictosidine synthase 3", "gene_name": "SSL11", "gene_names_uniprotkb": "SSL11; F2P9.13; SS12; SS3", "gene_names_refseq": "ATSS-3 STRICTOSIDINE SYNTHASE; F2P9.13; F2P9_13; SS3; strictosidine synthase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92976", "url": "https://www.uniprot.org/uniprotkb/P92976" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92976", "url": "https://www.uniprot.org/uniprotkb/P92976", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GGKILKYLPKKGYVDFAQIT", "down_seq": "SSKSSLCDGALGTTNVEKCG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn79", "evidence": [ { "id": "P92976", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P92976#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93009-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "P93009-1", "length": 182, "uniprot_id": "CUTA_ARATH", "protein_name": "Protein CutA, chloroplastic", "refseq_ac": "NP_180930", "refseq_name": "Nitrogen regulatory PII-like, alpha/beta", "gene_name": "CUTA", "gene_names_uniprotkb": "CUTA; T1B8.5", "gene_names_refseq": "CUTA; T1B8.5; T1B8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93009", "url": "https://www.uniprot.org/uniprotkb/P93009" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSSIRMEESSKTVPSIVVYV", "down_seq": "VPNREAGKKLANSIVQEKLA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr86", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93009-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "P93009-1", "length": 182, "uniprot_id": "CUTA_ARATH", "protein_name": "Protein CutA, chloroplastic", "refseq_ac": "NP_180930", "refseq_name": "Nitrogen regulatory PII-like, alpha/beta", "gene_name": "CUTA", "gene_names_uniprotkb": "CUTA; T1B8.5", "gene_names_refseq": "CUTA; T1B8.5; T1B8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93009", "url": "https://www.uniprot.org/uniprotkb/P93009" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P93009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93009" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P93009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93009", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ACVNIVPGIESVYEWEGKVQ", "down_seq": "DSEELLIIKTRQSLLEPLTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93009" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser127" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93009-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "P93009-1", "length": 182, "uniprot_id": "CUTA_ARATH", "protein_name": "Protein CutA, chloroplastic", "refseq_ac": "NP_180930", "refseq_name": "Nitrogen regulatory PII-like, alpha/beta", "gene_name": "CUTA", "gene_names_uniprotkb": "CUTA; T1B8.5", "gene_names_refseq": "CUTA; T1B8.5; T1B8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93009", "url": "https://www.uniprot.org/uniprotkb/P93009" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P93009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93009" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P93009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93009", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MASSLTTRLSAVIG", "down_seq": "RRSFPIVGAFCVLSTLSISS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93009" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93013-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "P93013-1", "length": 239, "uniprot_id": "AGP30_ARATH", "protein_name": "Non-classical arabinogalactan protein 30", "refseq_ac": "NP_180935", "refseq_name": "arabinogalactan protein 30", "gene_name": "AGP30", "gene_names_uniprotkb": "AGP30", "gene_names_refseq": "AGP30; ATAGP30; T1B8.9; T1B8_9; arabinogalactan protein 30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93013", "url": "https://www.uniprot.org/uniprotkb/P93013" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93013", "url": "https://www.uniprot.org/uniprotkb/P93013", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LPTLPPIKPPVLPPVYPPKY", "down_seq": "KTLVAVRGVVYCKACKYAGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn106", "evidence": [ { "id": "P93013", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93013#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93013-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "P93013-1", "length": 239, "uniprot_id": "AGP30_ARATH", "protein_name": "Non-classical arabinogalactan protein 30", "refseq_ac": "NP_180935", "refseq_name": "arabinogalactan protein 30", "gene_name": "AGP30", "gene_names_uniprotkb": "AGP30", "gene_names_refseq": "AGP30; ATAGP30; T1B8.9; T1B8_9; arabinogalactan protein 30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93013", "url": "https://www.uniprot.org/uniprotkb/P93013" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P93013", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93013" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "P93013", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93013", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PVKDAVVRLVCKNKKNSISE", "down_seq": "KTDKNGYFMLLAPKTVTNYD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93013", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93013" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr154" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "P93017", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P93017" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P93017", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P93017", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "P93017", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P93017" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NKITTQPLDIKGVGEGSSSK", "down_seq": "VAAVAGSPGTPTTPGSARKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P93017-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P93017-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P93017-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P93017-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P93017-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" }, { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDIKGVGEGSSSKTVAAVAG", "down_seq": "PGTPTTPGSARKENVWRSVF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P93017-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93017-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P93017-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P93017-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P93017-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" }, { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KGVGEGSSSKTVAAVAGSPG", "down_seq": "PTTPGSARKENVWRSVFHPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr50" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P93017-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93017-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93017-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93017-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P93017-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VGEGSSSKTVAAVAGSPGTP", "down_seq": "TPGSARKENVWRSVFHPGSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P93017-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P93017-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93017-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P93017-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93017-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P93017-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GEGSSSKTVAAVAGSPGTPT", "down_seq": "PGSARKENVWRSVFHPGSNI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P93017-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P93017-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93017-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P93017-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93017-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P93017-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSKTVAAVAGSPGTPTTPG", "down_seq": "ARKENVWRSVFHPGSNIATR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P93017-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P93017-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P93017-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93017-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93017-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P93017-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTTPGSARKENVWRSVFHPG", "down_seq": "NIATRGMGTNLFDKPSHPNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser71" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P93017-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P93017-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P93017-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P93017-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P93017-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHPGSNIATRGMGTNLFDKP", "down_seq": "HPNSPTVYDWLYSDDTRSKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P93017-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93017-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P93017-1.99.99", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNIATRGMGTNLFDKPSHPN", "down_seq": "PTVYDWLYSDDTRSKHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser91" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P93017-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93017-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P93017-1.99.99", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93017-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "P93017-1", "length": 108, "uniprot_id": "DRMH1_ARATH", "protein_name": "Dormancy-associated protein homolog 1", "refseq_ac": "NP_001318345", "refseq_name": "Dormancy/auxin associated family protein", "gene_name": "DRMH1", "gene_names_uniprotkb": "DRMH1; ARP1; DRM2; T1B8.13", "gene_names_refseq": "AtDRM2; DRM2; dormancy associated gene 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GTNLFDKPSHPNSPTVYDWL", "down_seq": "SDDTRSKHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93017", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93017" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Tyr99" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P93017-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P93017-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93043-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "P93043-1", "length": 980, "uniprot_id": "VPS41_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "refseq_ac": "NP_172297", "refseq_name": "vacuolar protein sorting 41", "gene_name": "VPS41", "gene_names_uniprotkb": "VPS41; T23G18.5", "gene_names_refseq": "ATVAM2; ATVPS41; T23G18.5; T23G18_5; VACUOLAR PROTEIN SORTING 41; VAM2; VPS41; ZIGZAG SUPPRESSOR 2; ZIP2; vacuolar protein sorting 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93043", "url": "https://www.uniprot.org/uniprotkb/P93043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LVILAYIPIEGDGEKEFSST", "down_seq": "TLSRQGNAQRPEIRIVSWNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr322" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "860", "end_pos": "860" }, { "start_pos": "862", "end_pos": "862" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P93043-1.325.325", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93043-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "P93043-1", "length": 980, "uniprot_id": "VPS41_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "refseq_ac": "NP_172297", "refseq_name": "vacuolar protein sorting 41", "gene_name": "VPS41", "gene_names_uniprotkb": "VPS41; T23G18.5", "gene_names_refseq": "ATVAM2; ATVPS41; T23G18.5; T23G18_5; VACUOLAR PROTEIN SORTING 41; VAM2; VPS41; ZIGZAG SUPPRESSOR 2; ZIP2; vacuolar protein sorting 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93043", "url": "https://www.uniprot.org/uniprotkb/P93043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAYIPIEGDGEKEFSSTTTL", "down_seq": "RQGNAQRPEIRIVSWNNDEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" } ], "site_lbl": "Ser325" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "860", "end_pos": "860" }, { "start_pos": "862", "end_pos": "862" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P93043-1.322.322", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93043-1.860.860", "start_pos": 860, "end_pos": 860, "uniprot_canonical_ac": "P93043-1", "length": 980, "uniprot_id": "VPS41_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "refseq_ac": "NP_172297", "refseq_name": "vacuolar protein sorting 41", "gene_name": "VPS41", "gene_names_uniprotkb": "VPS41; T23G18.5", "gene_names_refseq": "ATVAM2; ATVPS41; T23G18.5; T23G18_5; VACUOLAR PROTEIN SORTING 41; VAM2; VPS41; ZIGZAG SUPPRESSOR 2; ZIP2; vacuolar protein sorting 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93043", "url": "https://www.uniprot.org/uniprotkb/P93043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VCLSHEDDDSRAKREDNNRS", "down_seq": "FSQRMVVDKSLSIKMTEVKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser860" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "860", "end_pos": "860" }, { "start_pos": "862", "end_pos": "862" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P93043-1.862.862", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93043-1.862.862", "start_pos": 862, "end_pos": 862, "uniprot_canonical_ac": "P93043-1", "length": 980, "uniprot_id": "VPS41_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "refseq_ac": "NP_172297", "refseq_name": "vacuolar protein sorting 41", "gene_name": "VPS41", "gene_names_uniprotkb": "VPS41; T23G18.5", "gene_names_refseq": "ATVAM2; ATVPS41; T23G18.5; T23G18_5; VACUOLAR PROTEIN SORTING 41; VAM2; VPS41; ZIGZAG SUPPRESSOR 2; ZIP2; vacuolar protein sorting 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93043", "url": "https://www.uniprot.org/uniprotkb/P93043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSHEDDDSRAKREDNNRSSF", "down_seq": "QRMVVDKSLSIKMTEVKSKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93043" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser862" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "860", "end_pos": "860" }, { "start_pos": "862", "end_pos": "862" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P93043-1.860.860", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93050-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "P93050-1", "length": 617, "uniprot_id": "RKF3_ARATH", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "refseq_ac": "NP_182322", "refseq_name": "receptor-like kinase in in flowers 3", "gene_name": "RKF3", "gene_names_uniprotkb": "RKF3; AT2324; T9J23.16", "gene_names_refseq": "RKF3; T9J23.16; receptor-like kinase in in flowers 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WISQGCMDITTRSQFESLIP", "down_seq": "SSLATTAMRCNTSLESNTPC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn124", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P93050-1.135.135", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93050-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "P93050-1", "length": 617, "uniprot_id": "RKF3_ARATH", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "refseq_ac": "NP_182322", "refseq_name": "receptor-like kinase in in flowers 3", "gene_name": "RKF3", "gene_names_uniprotkb": "RKF3; AT2324; T9J23.16", "gene_names_refseq": "RKF3; T9J23.16; receptor-like kinase in in flowers 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RSQFESLIPNSSLATTAMRC", "down_seq": "TSLESNTPCASCTQSLSAFQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn135", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P93050-1.124.124", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93050-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "P93050-1", "length": 617, "uniprot_id": "RKF3_ARATH", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "refseq_ac": "NP_182322", "refseq_name": "receptor-like kinase in in flowers 3", "gene_name": "RKF3", "gene_names_uniprotkb": "RKF3; AT2324; T9J23.16", "gene_names_refseq": "RKF3; T9J23.16; receptor-like kinase in in flowers 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASCTQSLSAFQPYLSGPSLG", "down_seq": "VSDCASFPSIYAAAFANSLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn165", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93050-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P93050-1", "length": 617, "uniprot_id": "RKF3_ARATH", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "refseq_ac": "NP_182322", "refseq_name": "receptor-like kinase in in flowers 3", "gene_name": "RKF3", "gene_names_uniprotkb": "RKF3; AT2324; T9J23.16", "gene_names_refseq": "RKF3; T9J23.16; receptor-like kinase in in flowers 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LFLRRIAVVFFVFTSFSAAQ", "down_seq": "STCPLDFSVLEPFRRPKPDG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn22", "evidence": [ { "id": "P93050", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93050#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93050-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "P93050-1", "length": 617, "uniprot_id": "RKF3_ARATH", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "refseq_ac": "NP_182322", "refseq_name": "receptor-like kinase in in flowers 3", "gene_name": "RKF3", "gene_names_uniprotkb": "RKF3; AT2324; T9J23.16", "gene_names_refseq": "RKF3; T9J23.16; receptor-like kinase in in flowers 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" }, { "database": "iPTMnet", "id": "P93050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93050" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P93050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93050" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93050" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P93050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93050" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "P93050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKLLKPRDTSLEAGTQSRLD", "down_seq": "MSESTTLVKFSFDEIKKATN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93050" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser261" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93303-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "P93303-1", "length": 158, "uniprot_id": "YMF19_ARATH", "protein_name": "ATP synthase protein YMF19", "refseq_ac": "NP_178793", "refseq_name": "Plant mitochondrial ATPase, F0 complex, subunit 8 protein", "gene_name": "YMF19", "gene_names_uniprotkb": "YMF19; ATP8", "gene_names_refseq": "T18C6.15; T18C6_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93303", "url": "https://www.uniprot.org/uniprotkb/P93303" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93303", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93303" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93303", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93303", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISRILKLRNQLLSHRGKTIR", "down_seq": "KDPNSLEDLLRKGFSTGVSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93303", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93303" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser57" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93313-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "P93313-1", "length": 495, "uniprot_id": "NU4M_ARATH", "protein_name": "NADH-ubiquinone oxidoreductase chain 4", "refseq_ac": "", "refseq_name": "", "gene_name": "ND4", "gene_names_uniprotkb": "ND4; NAD4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93313", "url": "https://www.uniprot.org/uniprotkb/P93313" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VKVPMVPVHIWLPEAHVEAP", "down_seq": "AGSVILAGILLKFGTYGFLR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr246", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93756-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "P93756-1", "length": 764, "uniprot_id": "SD31_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "refseq_ac": "NP_001318404", "refseq_name": "curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein", "gene_name": "SD31", "gene_names_uniprotkb": "SD31; T11A7.1", "gene_names_refseq": "T11A7.1; T11A7_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSYYSLHLEDSGRLELRWES", "down_seq": "ITFWSSGNEVVKKKKKKKNI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn198", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93756-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "P93756-1", "length": 764, "uniprot_id": "SD31_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "refseq_ac": "NP_001318404", "refseq_name": "curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein", "gene_name": "SD31", "gene_names_uniprotkb": "SD31; T11A7.1", "gene_names_refseq": "T11A7.1; T11A7_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LFLEDQDLMRPVWSVFGEDH", "down_seq": "DTVKFRFLRLDRDGNLRMYS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn248", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93756-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "P93756-1", "length": 764, "uniprot_id": "SD31_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "refseq_ac": "NP_001318404", "refseq_name": "curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein", "gene_name": "SD31", "gene_names_uniprotkb": "SD31; T11A7.1", "gene_names_refseq": "T11A7.1; T11A7_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QAVENQCRVFATCGSQVCSF", "down_seq": "SSGYTECNCPFNAFVSVSDP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn301", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93756-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "P93756-1", "length": 764, "uniprot_id": "SD31_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "refseq_ac": "NP_001318404", "refseq_name": "curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein", "gene_name": "SD31", "gene_names_uniprotkb": "SD31; T11A7.1", "gene_names_refseq": "T11A7.1; T11A7_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KSGFNMVKFKNLELYGIYPA", "down_seq": "DSVISQISSQRCKKLCLENS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn353", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93756-1.423.423", "start_pos": 423, "end_pos": 423, "uniprot_canonical_ac": "P93756-1", "length": 764, "uniprot_id": "SD31_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "refseq_ac": "NP_001318404", "refseq_name": "curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein", "gene_name": "SD31", "gene_names_uniprotkb": "SD31; T11A7.1", "gene_names_refseq": "T11A7.1; T11A7_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLSSISYVKTCLDPIAVDPN", "down_seq": "VSKESPVTVTKSHSICIPCL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn423", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93756-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "P93756-1", "length": 764, "uniprot_id": "SD31_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1", "refseq_ac": "NP_001318404", "refseq_name": "curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein", "gene_name": "SD31", "gene_names_uniprotkb": "SD31; T11A7.1", "gene_names_refseq": "T11A7.1; T11A7_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93756", "url": "https://www.uniprot.org/uniprotkb/P93756", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IPYDQRKVVWVAGAGVVVSD", "down_seq": "SSYFELTRNGELVLFDSLLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn92", "evidence": [ { "id": "P93756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P93756#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94014-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "P94014-1", "length": 219, "uniprot_id": "GL21_ARATH", "protein_name": "Germin-like protein subfamily 2 member 1", "refseq_ac": "NP_172427", "refseq_name": "germin-like protein 5", "gene_name": "GLP4", "gene_names_uniprotkb": "GLP4; F14J9.22; GLP5", "gene_names_refseq": "F14J9.22; F14J9_22; GLP5; PDGLP1; PLASMODESMAL GERMIN-LIKE PROTEIN 1; germin-like protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94014", "url": "https://www.uniprot.org/uniprotkb/P94014" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94014", "url": "https://www.uniprot.org/uniprotkb/P94014", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AATVTSADFFSQGLAKPGLT", "down_seq": "NTFGALVTGANVMTIPGLNT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn70", "evidence": [ { "id": "P94014", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94014#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94040-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "P94040-1", "length": 208, "uniprot_id": "GL31_ARATH", "protein_name": "Germin-like protein subfamily 3 member 1", "refseq_ac": "NP_177405", "refseq_name": "germin-like protein 1", "gene_name": "GLP1", "gene_names_uniprotkb": "GLP1; F28P22.20; GER1; GLP3", "gene_names_refseq": "A. THALIANA GERMIN-LIKE PROTEIN 1; ATGER1; F28P22.20; F28P22_20; GER1; GERMIN-LIKE PROTEIN 1; GLP1; germin-like protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94040", "url": "https://www.uniprot.org/uniprotkb/P94040" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94040", "url": "https://www.uniprot.org/uniprotkb/P94040", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IRPIHVKATDFVFSGLGTPG", "down_seq": "TTNIINAAVTPAFAAQFPGL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn59", "evidence": [ { "id": "P94040", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94040#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "59", "end_pos": "59" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P94040-1.69.69", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94040-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P94040-1", "length": 208, "uniprot_id": "GL31_ARATH", "protein_name": "Germin-like protein subfamily 3 member 1", "refseq_ac": "NP_177405", "refseq_name": "germin-like protein 1", "gene_name": "GLP1", "gene_names_uniprotkb": "GLP1; F28P22.20; GER1; GLP3", "gene_names_refseq": "A. THALIANA GERMIN-LIKE PROTEIN 1; ATGER1; F28P22.20; F28P22_20; GER1; GERMIN-LIKE PROTEIN 1; GLP1; germin-like protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94040", "url": "https://www.uniprot.org/uniprotkb/P94040" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FVFSGLGTPGNTTNIINAAV", "down_seq": "PAFAAQFPGLNGLGLSTARL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "59", "end_pos": "59" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P94040-1.59.59", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94072-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "P94072-1", "length": 211, "uniprot_id": "GL33_ARATH", "protein_name": "Germin-like protein subfamily 3 member 3", "refseq_ac": "NP_197563", "refseq_name": "germin 3", "gene_name": "GER3", "gene_names_uniprotkb": "GER3; GLP2A; GLP2B; GLP3A; GLP3B; GLP3; T1M15.30", "gene_names_refseq": "ARABIDOPSIS THALIANA GERMIN 3; ATGER3; GER3; GERMIN-LIKE PROTEIN 3; GLP3A; GLP3B; GLP3; T1M15.30; T1M15_30; germin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KNPDQVTENDFAFTGLGTAG", "down_seq": "TSNIIKAAVTPAFAPAYAGI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn62", "evidence": [ { "id": "P94072", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94072#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "62", "end_pos": "62" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "140", "end_pos": "140" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P94072-1.72.72", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94072-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P94072-1", "length": 211, "uniprot_id": "GL33_ARATH", "protein_name": "Germin-like protein subfamily 3 member 3", "refseq_ac": "NP_197563", "refseq_name": "germin 3", "gene_name": "GER3", "gene_names_uniprotkb": "GER3; GLP2A; GLP2B; GLP3A; GLP3B; GLP3; T1M15.30", "gene_names_refseq": "ARABIDOPSIS THALIANA GERMIN 3; ATGER3; GER3; GERMIN-LIKE PROTEIN 3; GLP3A; GLP3B; GLP3; T1M15.30; T1M15_30; germin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FAFTGLGTAGNTSNIIKAAV", "down_seq": "PAFAPAYAGINGLGVSLARL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "62", "end_pos": "62" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "140", "end_pos": "140" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P94072-1.62.62", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94072-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "P94072-1", "length": 211, "uniprot_id": "GL33_ARATH", "protein_name": "Germin-like protein subfamily 3 member 3", "refseq_ac": "NP_197563", "refseq_name": "germin 3", "gene_name": "GER3", "gene_names_uniprotkb": "GER3; GLP2A; GLP2B; GLP3A; GLP3B; GLP3; T1M15.30", "gene_names_refseq": "ARABIDOPSIS THALIANA GERMIN 3; ATGER3; GER3; GERMIN-LIKE PROTEIN 3; GLP3A; GLP3B; GLP3; T1M15.30; T1M15_30; germin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072" }, { "database": "iPTMnet", "id": "P94072", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P94072" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P94072", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P94072", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CAGFISSANKVYLKTLNRGD", "down_seq": "MVFPQGLLHFQLNSGKGPAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P94072", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P94072" } ], "site_lbl": "Ser140" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "62", "end_pos": "62" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "140", "end_pos": "140" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P94111-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "P94111-1", "length": 335, "uniprot_id": "SSL12_ARATH", "protein_name": "Protein STRICTOSIDINE SYNTHASE-LIKE 12", "refseq_ac": "", "refseq_name": "", "gene_name": "SSL12", "gene_names_uniprotkb": "SSL12; F2P9.11; SS13; SS1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94111", "url": "https://www.uniprot.org/uniprotkb/P94111" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ITDSVDGKPFKFLDGLDVDP", "down_seq": "TGVVYFTSFSSRFSPIQVLI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P94111-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "P94111-1", "length": 335, "uniprot_id": "SSL12_ARATH", "protein_name": "Protein STRICTOSIDINE SYNTHASE-LIKE 12", "refseq_ac": "", "refseq_name": "", "gene_name": "SSL12", "gene_names_uniprotkb": "SSL12; F2P9.11; SS13; SS1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94111", "url": "https://www.uniprot.org/uniprotkb/P94111" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P94111", "url": "https://www.uniprot.org/uniprotkb/P94111", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ILKYLPETGYVDFAQITESS", "down_seq": "SSWCDGTIGTALAGRCGRPA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn80", "evidence": [ { "id": "P94111", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P94111#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P98204-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DPILGVSSRWSVSSKDNKEV", "down_seq": "FGDLGSKRIRHGSAGADSEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr34" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P98204-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P98204-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P98204-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSRWSVSSKDNKEVTFGDLG", "down_seq": "KRIRHGSAGADSEMLSMSQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P98204-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P98204-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P98204-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P98204-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKDNKEVTFGDLGSKRIRHG", "down_seq": "AGADSEMLSMSQKEIKDEDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P98204-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P98204-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P98204-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P98204-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.517.517", "start_pos": 517, "end_pos": 517, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DGIILKPKMRVRVDPVLLQL", "down_seq": "KTGKATEEAKRANEFFLSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr517" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVTFGDLGSKRIRHGSAGAD", "down_seq": "EMLSMSQKEIKDEDARLIYI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P98204-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P98204-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P98204-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P98204-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGSKRIRHGSAGADSEMLSM", "down_seq": "QKEIKDEDARLIYINDPDRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser58" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P98204-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P98204-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P98204-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDPRK", "down_seq": "IDKPPHHDPILGVSSRWSVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P98204-1.774.774", "start_pos": 774, "end_pos": 774, "uniprot_canonical_ac": "P98204-1", "length": 1158, "uniprot_id": "ALA1_ARATH", "protein_name": "Phospholipid-transporting ATPase 1", "refseq_ac": "NP_568146", "refseq_name": "aminophospholipid ATPase 1", "gene_name": "ALA1", "gene_names_uniprotkb": "ALA1; MUG13.22", "gene_names_refseq": "ALA1; aminophospholipid ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P98204", "url": "https://www.uniprot.org/uniprotkb/P98204" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGFSSRLLTRNMRQIVINSN", "down_seq": "LDSCRRSLEEANASIASNDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P98204", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P98204" } ], "site_lbl": "Ser774" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "774", "end_pos": "774" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01525-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSKIETELSGICDGILKLLD", "down_seq": "RLIPAAASGDSKVFYLKMKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "site_lbl": "Ser109" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q01525-1.97.97", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01525-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPIRLGLALNFSVFYYEILN", "down_seq": "PDRACNLAKQAFDEAIAELD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "site_lbl": "Ser190" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01525-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PDRACNLAKQAFDEAIAELD", "down_seq": "LGEESYKDSTLIMQLLRDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "site_lbl": "Thr211" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01525-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYKDSTLIMQLLRDNLTLWT", "down_seq": "DMQDDAADEIKEAAAPKPTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser236" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q01525-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01525-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] } ], "crossref": [ { "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TSDMQDDAADEIKEAAAPKP", "down_seq": "EEQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Thr255" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q01525-1.236.236", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01525-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKVSAAVDGDELTVEERNLL", "down_seq": "VAYKNVIGARRASWRIISSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q01525-1.67.67", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01525-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLSVAYKNVIGARRASWRII", "down_seq": "SIEQKEESRGNDDHVTAIRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "site_lbl": "Ser67" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q01525-1.49.49", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01525-1.97.97", "start_pos": 97, "end_pos": 97, "uniprot_canonical_ac": "Q01525-1", "length": 259, "uniprot_id": "14332_ARATH", "protein_name": "14-3-3-like protein GF14 omega", "refseq_ac": "NP_565176", "refseq_name": "general regulatory factor 2", "gene_name": "GRF2", "gene_names_uniprotkb": "GRF2; F3F9.16; GF14", "gene_names_refseq": "14-3-3 PROTEIN G-BOX FACTOR14 OMEGA; 14-3-3OMEGA; F3F9.16; F3F9_16; GF14 OMEGA; GRF2; general regulatory factor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01525", "url": "https://www.uniprot.org/uniprotkb/Q01525" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GNDDHVTAIREYRSKIETEL", "down_seq": "GICDGILKLLDSRLIPAAAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q01525", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01525" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser97" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q01525-1.109.109", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01909-1.331.331", "start_pos": 331, "end_pos": 331, "uniprot_canonical_ac": "Q01909-1", "length": 386, "uniprot_id": "ATPG2_ARATH", "protein_name": "ATP synthase gamma chain 2, chloroplastic", "refseq_ac": "NP_173022", "refseq_name": "ATPase, F1 complex, gamma subunit protein", "gene_name": "ATPC2", "gene_names_uniprotkb": "ATPC2; F7H2.4", "gene_names_refseq": "ATPC2; F7H2.4; F7H2_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01909", "url": "https://www.uniprot.org/uniprotkb/Q01909" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q01909", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01909", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILDAMMPLYLNSQILRALQE", "down_seq": "LASELASRMNAMSNATDNAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q01909", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01909" } ], "site_lbl": "Ser331" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q01909-1.334.334", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01909-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "Q01909-1", "length": 386, "uniprot_id": "ATPG2_ARATH", "protein_name": "ATP synthase gamma chain 2, chloroplastic", "refseq_ac": "NP_173022", "refseq_name": "ATPase, F1 complex, gamma subunit protein", "gene_name": "ATPC2", "gene_names_uniprotkb": "ATPC2; F7H2.4", "gene_names_refseq": "ATPC2; F7H2.4; F7H2_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q01909", "url": "https://www.uniprot.org/uniprotkb/Q01909" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q01909", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01909", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMMPLYLNSQILRALQESLA", "down_seq": "ELASRMNAMSNATDNAVELK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q01909", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01909" } ], "site_lbl": "Ser334" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "331", "end_pos": "331" }, { "start_pos": "334", "end_pos": "334" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q01909-1.331.331", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05196-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAAAVASGIAP", "down_seq": "TAMVDQVIPNQPTVAAAAPP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr12", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05196-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLNDKQVFVGHFVRRQDRAR", "down_seq": "ESGAVPSFTNVYVKNLPKEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q05196-1.232.232", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDKQVFVGHFVRRQDRARSE", "down_seq": "GAVPSFTNVYVKNLPKEITD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q05196-1.230.230", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EELRRKFEQERISRFEKLQG", "down_seq": "NLYLKNLDDSVNDEKLKEMF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "site_lbl": "Ser342" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05196-1.594.594", "start_pos": 594, "end_pos": 594, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SHNAPQRSHKPTPLTISKLA", "down_seq": "DLALASPDKHPRMLGDHLYP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser594" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q05196-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.600.600", "start_pos": 600, "end_pos": 600, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" }, { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSHKPTPLTISKLASDLALA", "down_seq": "PDKHPRMLGDHLYPLVEQQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser600" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q05196-1.594.594", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.670.670", "start_pos": 670, "end_pos": 670, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAKVSEALDVLRRSADPAAV", "down_seq": "SVDDQFALSSSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser670" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q05196-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q05196-1.679.679", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q05196-1.680.680", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q05196-1.681.681", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.671.671", "start_pos": 671, "end_pos": 671, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKVSEALDVLRRSADPAAVS", "down_seq": "VDDQFALSSSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser671" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q05196-1.670.670", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q05196-1.679.679", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q05196-1.680.680", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q05196-1.681.681", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.679.679", "start_pos": 679, "end_pos": 679, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLRRSADPAAVSSVDDQFAL", "down_seq": "SSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser679" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q05196-1.670.670", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q05196-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q05196-1.680.680", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q05196-1.681.681", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.680.680", "start_pos": 680, "end_pos": 680, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRRSADPAAVSSVDDQFALS", "down_seq": "SE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser680" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q05196-1.670.670", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q05196-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q05196-1.679.679", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q05196-1.681.681", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05196-1.681.681", "start_pos": 681, "end_pos": 681, "uniprot_canonical_ac": "Q05196-1", "length": 682, "uniprot_id": "PABP5_ARATH", "protein_name": "Polyadenylate-binding protein 5", "refseq_ac": "NP_001185373", "refseq_name": "poly(A)-binding protein 5", "gene_name": "PAB5", "gene_names_uniprotkb": "PAB5; F14O23.15", "gene_names_refseq": "F14O23.15; F14O23_15; PAB5; POLY(A)-BINDING PROTEIN; poly(A)-binding protein 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05196", "url": "https://www.uniprot.org/uniprotkb/Q05196" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSADPAAVSSVDDQFALSS", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05196", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05196" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser681" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q05196-1.670.670", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q05196-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q05196-1.679.679", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q05196-1.680.680", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06915-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "Q06915-1", "length": 478, "uniprot_id": "EA6_ARATH", "protein_name": "Probable glucan endo-1,3-beta-glucosidase A6", "refseq_ac": "NP_193144", "refseq_name": "O-Glycosyl hydrolases family 17 protein", "gene_name": "A6", "gene_names_uniprotkb": "A6; MEE48; dl3080c", "gene_names_refseq": "DL3080C; FCAALL.82; MEE48; maternal effect embryo arrest 48", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06915", "url": "https://www.uniprot.org/uniprotkb/Q06915" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NAATYNRNLIKKMSASPPIG", "down_seq": "PSRPGLPIPTFVFSLFNENQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr318", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "318", "end_pos": "318" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0IGK1-1.429.429", "start_pos": 429, "end_pos": 429, "uniprot_canonical_ac": "Q0IGK1-1", "length": 445, "uniprot_id": "MBD4L_ARATH", "protein_name": "Methyl-CpG-binding domain protein 4-like protein", "refseq_ac": "NP_001327391", "refseq_name": "DNA glycosylase superfamily protein", "gene_name": "MBD4L", "gene_names_uniprotkb": "MBD4L; F17A17.27", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0IGK1", "url": "https://www.uniprot.org/uniprotkb/Q0IGK1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular characterization of a putative plant homolog of MBD4 DNA glycosylase.", "journal": "DNA repair", "date": "2013-11", "authors": "Ramiro-Merina \u00c1ngel, Ariza Rafael R, Rold\u00e1n-Arjona Teresa", "evidence": [ { "database": "UniProtKB", "id": "Q0IGK1", "url": "https://www.uniprot.org/uniprotkb/Q0IGK1" } ], "reference": [ { "type": "PubMed", "id": "23994068", "url": "https://glygen.org/publication/PubMed/23994068" } ] } ], "crossref": [ { "id": "Q0IGK1", "url": "https://www.uniprot.org/uniprotkb/Q0IGK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23994068", "url": "https://glygen.org/publication/PubMed/23994068", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "YAADAYAIFCNGNWDRVKPN", "down_seq": "HMLNYYWDYLRIRYKL", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Reduces activity 160-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q0IGK1", "url": "https://www.uniprot.org/uniprotkb/Q0IGK1" }, { "database": "PubMed", "id": "23994068", "url": "https://glygen.org/publication/PubMed/23994068" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "429", "end_pos": "429" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0V7T5-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q0V7T5-1", "length": 427, "uniprot_id": "Y1864_ARATH", "protein_name": "Probable receptor-like protein kinase At1g80640", "refseq_ac": "NP_178179", "refseq_name": "Protein kinase superfamily protein", "gene_name": "T21F11.3", "gene_names_uniprotkb": "T21F11.3", "gene_names_refseq": "T21F11.3; T21F11_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V7T5", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0V7T5", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HQNIVSLLGFCVYRQTSCIV", "down_seq": "ELMQNGSLESQLHGPSQGSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q0V7T5", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ], "site_lbl": "Tyr223" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" }, { "start_pos": "279", "end_pos": "279" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0V7T5-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q0V7T5-1", "length": 427, "uniprot_id": "Y1864_ARATH", "protein_name": "Probable receptor-like protein kinase At1g80640", "refseq_ac": "NP_178179", "refseq_name": "Protein kinase superfamily protein", "gene_name": "T21F11.3", "gene_names_uniprotkb": "T21F11.3", "gene_names_refseq": "T21F11.3; T21F11_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V7T5", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0V7T5", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLEYLHEHCHPPVVHRDLKS", "down_seq": "SILLDSDFNAKISDFGFATV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0V7T5", "url": "https://www.uniprot.org/uniprotkb/Q0V7T5" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" }, { "start_pos": "279", "end_pos": "279" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0V842-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "Q0V842-1", "length": 487, "uniprot_id": "NEN2_ARATH", "protein_name": "Protein NEN2", "refseq_ac": "NP_200947", "refseq_name": "Polynucleotidyl transferase, ribonuclease H-like superfamily protein", "gene_name": "NEN2", "gene_names_uniprotkb": "NEN2; MFB13.17", "gene_names_refseq": "MFB13.17; MFB13_17; NAC45/86-DEPENDENT EXONUCLEASE-DOMAIN PROTEIN 2; NEN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V842", "url": "https://www.uniprot.org/uniprotkb/Q0V842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0V842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V842", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CPRIREAFAEIGRDPPEPKG", "down_seq": "IDSLALLTQRFGRRAGDMKM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V842" } ], "site_lbl": "Thr133" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0V842-1.136.136", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0V842-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "Q0V842-1", "length": 487, "uniprot_id": "NEN2_ARATH", "protein_name": "Protein NEN2", "refseq_ac": "NP_200947", "refseq_name": "Polynucleotidyl transferase, ribonuclease H-like superfamily protein", "gene_name": "NEN2", "gene_names_uniprotkb": "NEN2; MFB13.17", "gene_names_refseq": "MFB13.17; MFB13_17; NAC45/86-DEPENDENT EXONUCLEASE-DOMAIN PROTEIN 2; NEN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V842", "url": "https://www.uniprot.org/uniprotkb/Q0V842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0V842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V842", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IREAFAEIGRDPPEPKGTID", "down_seq": "LALLTQRFGRRAGDMKMATL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V842" } ], "site_lbl": "Ser136" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0V842-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0V842-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "Q0V842-1", "length": 487, "uniprot_id": "NEN2_ARATH", "protein_name": "Protein NEN2", "refseq_ac": "NP_200947", "refseq_name": "Polynucleotidyl transferase, ribonuclease H-like superfamily protein", "gene_name": "NEN2", "gene_names_uniprotkb": "NEN2; MFB13.17", "gene_names_refseq": "MFB13.17; MFB13_17; NAC45/86-DEPENDENT EXONUCLEASE-DOMAIN PROTEIN 2; NEN2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V842", "url": "https://www.uniprot.org/uniprotkb/Q0V842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0V842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V842", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTELNGDIDRYAAEIHQKEF", "down_seq": "GATATQKLISSNPKAEEIES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V842" } ], "site_lbl": "Ser432" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0V865-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "Q0V865-1", "length": 463, "uniprot_id": "FAFL_ARATH", "protein_name": "Protein FAF-like, chloroplastic", "refseq_ac": "NP_001190360", "refseq_name": "FAF-like protein (DUF3049)", "gene_name": "T6G21.200", "gene_names_uniprotkb": "T6G21.200", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V865", "url": "https://www.uniprot.org/uniprotkb/Q0V865" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TESSKDTVPPPYVHPLMKRA", "down_seq": "SLSEKSLEICTESLGSETGC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser142" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q0V865-1.143.143", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0V865-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q0V865-1", "length": 463, "uniprot_id": "FAFL_ARATH", "protein_name": "Protein FAF-like, chloroplastic", "refseq_ac": "NP_001190360", "refseq_name": "FAF-like protein (DUF3049)", "gene_name": "T6G21.200", "gene_names_uniprotkb": "T6G21.200", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V865", "url": "https://www.uniprot.org/uniprotkb/Q0V865" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESSKDTVPPPYVHPLMKRAS", "down_seq": "LSEKSLEICTESLGSETGCD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0V865-1.142.142", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0V865-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q0V865-1", "length": 463, "uniprot_id": "FAFL_ARATH", "protein_name": "Protein FAF-like, chloroplastic", "refseq_ac": "NP_001190360", "refseq_name": "FAF-like protein (DUF3049)", "gene_name": "T6G21.200", "gene_names_uniprotkb": "T6G21.200", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V865", "url": "https://www.uniprot.org/uniprotkb/Q0V865" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MMACGLSKSLGLSS", "down_seq": "LKKQQGIVSILGGISSNTSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0V865-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q0V865-1", "length": 463, "uniprot_id": "FAFL_ARATH", "protein_name": "Protein FAF-like, chloroplastic", "refseq_ac": "NP_001190360", "refseq_name": "FAF-like protein (DUF3049)", "gene_name": "T6G21.200", "gene_names_uniprotkb": "T6G21.200", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V865", "url": "https://www.uniprot.org/uniprotkb/Q0V865" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SILGGISSNTSSAPSLRRTF", "down_seq": "ADLSSKTWVSQNGFSPMKRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q0V865-1.49.49", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0V865-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q0V865-1", "length": 463, "uniprot_id": "FAFL_ARATH", "protein_name": "Protein FAF-like, chloroplastic", "refseq_ac": "NP_001190360", "refseq_name": "FAF-like protein (DUF3049)", "gene_name": "T6G21.200", "gene_names_uniprotkb": "T6G21.200", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0V865", "url": "https://www.uniprot.org/uniprotkb/Q0V865" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISSNTSSAPSLRRTFSADLS", "down_seq": "KTWVSQNGFSPMKRISSSEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0V865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0V865" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0V865-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL52-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SIIVLQTTRALSPYSEELKL", "down_seq": "GRCLDSIASRASIDTSKVEW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" } ], "site_lbl": "Thr171" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL52-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLHIDLYKRALATIEARGNV", "down_seq": "ADVIGEALHAYAIKRIPGFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL52-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KFLSLAEMVSSFPRQSHDGV", "down_seq": "RAIDMFLKEHPEMNKSEKKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "site_lbl": "Tyr406" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL52-1.477.477", "start_pos": 477, "end_pos": 477, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVLFFEQVRANNNGSSSTGN", "down_seq": "TPEVIPASRSTNTTDQEDTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser477" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL52-1.538.538", "start_pos": 538, "end_pos": 538, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KNQQESHNQGKLMKGGGLGV", "down_seq": "RVFSKLWSGKERSGDMISSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser538" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q0WL52-1.546.546", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q0WL52-1.556.556", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL52-1.546.546", "start_pos": 546, "end_pos": 546, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGKLMKGGGLGVSRVFSKLW", "down_seq": "GKERSGDMISSSGTSSPGSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser546" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0WL52-1.538.538", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WL52-1.556.556", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL52-1.556.556", "start_pos": 556, "end_pos": 556, "uniprot_canonical_ac": "Q0WL52-1", "length": 580, "uniprot_id": "NPY5_ARATH", "protein_name": "Phototropic-responsive NPH3 family protein NPY5", "refseq_ac": "NP_568030", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPY5", "gene_names_uniprotkb": "NPY5; F19F18.80; MEL1; MEL2", "gene_names_refseq": "F19F18.80; F19F18_80; MAB4/ENP/NPY1-LIKE 1; MEL1; NAKED PINS IN YUC MUTANTS 5; NPY5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL52", "url": "https://www.uniprot.org/uniprotkb/Q0WL52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVSRVFSKLWSGKERSGDMI", "down_seq": "SSGTSSPGSVNDDSKSSSST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL52", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL52" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser556" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q0WL52-1.538.538", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WL52-1.546.546", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQNGEVISDVESYGLSLREV", "down_seq": "EEDGLRSIISNNSPGNEAKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q0WNW4-1.230.230", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WNW4-1.233.233", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESYGLSLREVSEEDGLRSII", "down_seq": "NNSPGNEAKSRVSEDEQRND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q0WNW4-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WNW4-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WNW4-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLSLREVSEEDGLRSIISNN", "down_seq": "PGNEAKSRVSEDEQRNDDTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser233" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q0WNW4-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WNW4-1.230.230", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WNW4-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGLRSIISNNSPGNEAKSRV", "down_seq": "EDEQRNDDTSNVATYGEDQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q0WNW4-1.230.230", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WNW4-1.233.233", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTMASMAKSLLPLLDAAENE", "down_seq": "EDGSQGLPESDEKNFGSDSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser586" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q0WNW4-1.590.590", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q0WNW4-1.603.603", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q0WNW4-1.605.605", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.590.590", "start_pos": 590, "end_pos": 590, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SMAKSLLPLLDAAENESEDG", "down_seq": "QGLPESDEKNFGSDSEKLEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser590" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WNW4-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WNW4-1.603.603", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WNW4-1.605.605", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.603.603", "start_pos": 603, "end_pos": 603, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENESEDGSQGLPESDEKNFG", "down_seq": "DSEKLEIIKQVDSVYERLQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser603" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q0WNW4-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q0WNW4-1.590.590", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WNW4-1.605.605", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNW4-1.605.605", "start_pos": 605, "end_pos": 605, "uniprot_canonical_ac": "Q0WNW4-1", "length": 675, "uniprot_id": "MYOB3_ARATH", "protein_name": "Myosin-binding protein 3", "refseq_ac": "NP_197174", "refseq_name": "caldesmon-like protein (Protein of unknown function, DUF593)", "gene_name": "MYOB3", "gene_names_uniprotkb": "MYOB3; F5E19.60", "gene_names_refseq": "F5E19.60; F5E19_60; MyoB3; myosin binding protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNW4", "url": "https://www.uniprot.org/uniprotkb/Q0WNW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESEDGSQGLPESDEKNFGSD", "down_seq": "EKLEIIKQVDSVYERLQELE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser605" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "590", "end_pos": "590" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "605", "end_pos": "605" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q0WNW4-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q0WNW4-1.590.590", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WNW4-1.603.603", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPN0-1.100.100", "start_pos": 100, "end_pos": 100, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNVAFNSMPPMRAESGYPRR", "down_seq": "ASPLLSSPEVSKQLLSKSCP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser100" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WPN0-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WPN0-1.107.107", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPN0-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VAFNSMPPMRAESGYPRRSA", "down_seq": "PLLSSPEVSKQLLSKSCPDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser102" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WPN0-1.100.100", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WPN0-1.107.107", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPN0-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPPMRAESGYPRRSASPLLS", "down_seq": "PEVSKQLLSKSCPDPRACEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q0WPN0-1.100.100", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WPN0-1.102.102", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPN0-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSLWPKMKGFVTESAAKPEG", "down_seq": "NSPPEKDDKKARQKNGIDVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr236" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WPN0-1.238.238", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPN0-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LWPKMKGFVTESAAKPEGTN", "down_seq": "PPEKDDKKARQKNGIDVVEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser238" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WPN0-1.236.236", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPN0-1.268.268", "start_pos": 268, "end_pos": 268, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQKNGIDVVEGFEDGFSKNK", "down_seq": "SVIGKGAKNGVTPSSPPSLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "site_lbl": "Ser268" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q0WPN0-1.269.269", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WPN0-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "Q0WPN0-1", "length": 1055, "uniprot_id": "DI32L_ARATH", "protein_name": "Inactive exonuclease DIS3L2", "refseq_ac": "NP_177891", "refseq_name": "Ribonuclease II/R family protein", "gene_name": "SOV", "gene_names_uniprotkb": "SOV; DIS3L2; T32E8.1; T5M16", "gene_names_refseq": "AtRRP44B; RRP44B; Rrp44 homolog B; SOV; SUPPRESSOR OF VARICOSE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPN0", "url": "https://www.uniprot.org/uniprotkb/Q0WPN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKNGIDVVEGFEDGFSKNKS", "down_seq": "VIGKGAKNGVTPSSPPSLDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPN0" } ], "site_lbl": "Ser269" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "269", "end_pos": "269" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0WPN0-1.268.268", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQK2-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NAHPPEPETLDGNMDAGAGQ", "down_seq": "PQLRLPRIKEVQLNGITFKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr128" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q0WQK2-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MYVVPPPQRSD", "down_seq": "GSNGDLRVYQTWKGSNIFFL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WQK2-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AGQTPQLRLPRIKEVQLNGI", "down_seq": "FKVKYCDTCMLYRPPRCSHC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q0WQK2-1.128.128", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MYVVPPPQRSDSG", "down_seq": "NGDLRVYQTWKGSNIFFLQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WQK2-1.12.12", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPSKNDFRAMVQREPPLPPR", "down_seq": "VAGGFMSPNMGKANDEIEMG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser320" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q0WQK2-1.327.327", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.327.327", "start_pos": 327, "end_pos": 327, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RAMVQREPPLPPRSVAGGFM", "down_seq": "PNMGKANDEIEMGRKAVWAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser327" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q0WQK2-1.320.320", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ANDEIEMGRKAVWADMGPAM", "down_seq": "DHGDGKHGNNERLHVKDGEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser353" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.", "journal": "Molecular & cellular proteomics : MCP", "date": "2003-11", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGKHGNNERLHVKDGELGEL", "down_seq": "PDIRATVDEQSDRPSMHPRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser377" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q0WQK2-1.392.392", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.392.392", "start_pos": 392, "end_pos": 392, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELGELSPDIRATVDEQSDRP", "down_seq": "MHPRRSSWGRKSGSWDMSPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser392" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q0WQK2-1.377.377", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WQK2-1.404.404", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WQK2-1.406.406", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q0WQK2-1.410.410", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.404.404", "start_pos": 404, "end_pos": 404, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDEQSDRPSMHPRRSSWGRK", "down_seq": "GSWDMSPEVMALAARVGEQN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser404" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q0WQK2-1.392.392", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WQK2-1.406.406", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WQK2-1.410.410", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQSDRPSMHPRRSSWGRKSG", "down_seq": "WDMSPEVMALAARVGEQNQN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser406" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WQK2-1.392.392", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WQK2-1.404.404", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQK2-1.410.410", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPSMHPRRSSWGRKSGSWDM", "down_seq": "PEVMALAARVGEQNQNGGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser410" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q0WQK2-1.392.392", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q0WQK2-1.404.404", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQK2-1.406.406", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q0WQK2-1.430.430", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.430.430", "start_pos": 430, "end_pos": 430, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPEVMALAARVGEQNQNGGG", "down_seq": "SSGSGLVTENRPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser430" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WQK2-1.410.410", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQK2-1.431.431", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQK2-1.434.434", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.431.431", "start_pos": 431, "end_pos": 431, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" }, { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEVMALAARVGEQNQNGGGS", "down_seq": "SGSGLVTENRPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser431" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0WQK2-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WQK2-1.434.434", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQK2-1.434.434", "start_pos": 434, "end_pos": 434, "uniprot_canonical_ac": "Q0WQK2-1", "length": 443, "uniprot_id": "ZDHC9_ARATH", "protein_name": "Probable protein S-acyltransferase 7", "refseq_ac": "NP_850638", "refseq_name": "DHHC-type zinc finger family protein", "gene_name": "PAT07", "gene_names_uniprotkb": "PAT07; MOJ10.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQK2", "url": "https://www.uniprot.org/uniprotkb/Q0WQK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MALAARVGEQNQNGGGSSSG", "down_seq": "GLVTENRPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQK2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser434" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WQK2-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WQK2-1.431.431", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WTP1-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q0WTP1-1", "length": 329, "uniprot_id": "AUG7_ARATH", "protein_name": "AUGMIN subunit 7", "refseq_ac": "NP_568354", "refseq_name": "nuclear matrix protein", "gene_name": "AUG7", "gene_names_uniprotkb": "AUG7; K10A8.100", "gene_names_refseq": "AUG7; K10A8.100; K10A8_100; augmin subunit 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WTP1", "url": "https://www.uniprot.org/uniprotkb/Q0WTP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EETVRIQYLAEIAKFLGITP", "down_seq": "VDIEAIQGHGTYEDRMEMLR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUV7-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q0WUV7-1", "length": 343, "uniprot_id": "EXL4_ARATH", "protein_name": "GDSL esterase/lipase EXL4", "refseq_ac": "NP_177719", "refseq_name": "extracellular lipase 4", "gene_name": "EXL4", "gene_names_uniprotkb": "EXL4; T4O12.250", "gene_names_refseq": "EXL4; T4O12.250; T4O12_250; extracellular lipase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUV7", "url": "https://www.uniprot.org/uniprotkb/Q0WUV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUV7", "url": "https://www.uniprot.org/uniprotkb/Q0WUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SKITLVLTLFSSYFISTDAV", "down_seq": "GSFPALLAFGDSILDTGNNN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn23", "evidence": [ { "id": "Q0WUV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUV7#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WVF8-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "Q0WVF8-1", "length": 1134, "uniprot_id": "MMS19_ARATH", "protein_name": "MMS19 nucleotide excision repair protein homolog", "refseq_ac": "NP_001318759", "refseq_name": "ARM repeat superfamily protein", "gene_name": "MMS19", "gene_names_uniprotkb": "MMS19; MDN11.21; MET18", "gene_names_refseq": "MDN11.21; MDN11_21; MET18; homolog of yeast MET18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WVF8", "url": "https://www.uniprot.org/uniprotkb/Q0WVF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WVF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVF8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CGALVGCLALLKRKDVAGVV", "down_seq": "DIDVQAMAKSMIQNVQVQAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WVF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVF8" } ], "site_lbl": "Thr124" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "124", "end_pos": "124" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WW26-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q0WW26-1", "length": 886, "uniprot_id": "COPG_ARATH", "protein_name": "Coatomer subunit gamma", "refseq_ac": "NP_195171", "refseq_name": "coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP", "gene_name": "T4L20.30", "gene_names_uniprotkb": "T4L20.30", "gene_names_refseq": "T4L20.30; T4L20_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WW26", "url": "https://www.uniprot.org/uniprotkb/Q0WW26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VQFHALALLHQIRQNDRLAV", "down_seq": "KLVGSLTRGSVRSPLAQCLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WW26-1.525.525", "start_pos": 525, "end_pos": 525, "uniprot_canonical_ac": "Q0WW26-1", "length": 886, "uniprot_id": "COPG_ARATH", "protein_name": "Coatomer subunit gamma", "refseq_ac": "NP_195171", "refseq_name": "coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP", "gene_name": "T4L20.30", "gene_names_uniprotkb": "T4L20.30", "gene_names_refseq": "T4L20.30; T4L20_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WW26", "url": "https://www.uniprot.org/uniprotkb/Q0WW26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FMVESLKPRITVLLKRCIYD", "down_seq": "DDEVRDRATLYLSVLGGDGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser525" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WW26-1.577.577", "start_pos": 577, "end_pos": 577, "uniprot_canonical_ac": "Q0WW26-1", "length": 886, "uniprot_id": "COPG_ARATH", "protein_name": "Coatomer subunit gamma", "refseq_ac": "NP_195171", "refseq_name": "coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP", "gene_name": "T4L20.30", "gene_names_uniprotkb": "T4L20.30", "gene_names_refseq": "T4L20.30; T4L20_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WW26", "url": "https://www.uniprot.org/uniprotkb/Q0WW26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGSLEVPLVNMETSLKNYEP", "down_seq": "EEAFDINSVPKEVKSQPLAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WW26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WW26" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser577" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSESVIQGSNPDRVL", "down_seq": "PTSSKSVTQTVNGSHQFVIQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q1EBV6-1.4.4", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.378.378", "start_pos": 378, "end_pos": 378, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DECVTLQSELLKAVAGHEEG", "down_seq": "NSTGGAKSQSVWAQLSDGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser378" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q1EBV6-1.380.380", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q1EBV6-1.381.381", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q1EBV6-1.394.394", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.380.380", "start_pos": 380, "end_pos": 380, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CVTLQSELLKAVAGHEEGSN", "down_seq": "TGGAKSQSVWAQLSDGGGDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser380" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q1EBV6-1.378.378", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q1EBV6-1.381.381", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q1EBV6-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q1EBV6-1.400.400", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.381.381", "start_pos": 381, "end_pos": 381, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VTLQSELLKAVAGHEEGSNS", "down_seq": "GGAKSQSVWAQLSDGGGDTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr381" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q1EBV6-1.378.378", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q1EBV6-1.380.380", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q1EBV6-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q1EBV6-1.400.400", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q1EBV6-1.401.401", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.394.394", "start_pos": 394, "end_pos": 394, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HEEGSNSTGGAKSQSVWAQL", "down_seq": "DGGGDTTSRHVRQRTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser394" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q1EBV6-1.378.378", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q1EBV6-1.380.380", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q1EBV6-1.381.381", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q1EBV6-1.400.400", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q1EBV6-1.401.401", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q1EBV6-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "STGGAKSQSVWAQLSDGGGD", "down_seq": "TSRHVRQRTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr400" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q1EBV6-1.380.380", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q1EBV6-1.381.381", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q1EBV6-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q1EBV6-1.401.401", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q1EBV6-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.401.401", "start_pos": 401, "end_pos": 401, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGGAKSQSVWAQLSDGGGDT", "down_seq": "SRHVRQRTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr401" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q1EBV6-1.381.381", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q1EBV6-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q1EBV6-1.400.400", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q1EBV6-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.402.402", "start_pos": 402, "end_pos": 402, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGAKSQSVWAQLSDGGGDTT", "down_seq": "RHVRQRTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser402" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q1EBV6-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q1EBV6-1.400.400", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q1EBV6-1.401.401", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1EBV6-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q1EBV6-1", "length": 410, "uniprot_id": "BPM5_ARATH", "protein_name": "BTB/POZ and MATH domain-containing protein 5", "refseq_ac": "NP_197600", "refseq_name": "BTB-POZ and MATH domain 5", "gene_name": "BPM5", "gene_names_uniprotkb": "BPM5; F22D1; T10F18.30", "gene_names_refseq": "ATBPM5; BPM5; BTB-POZ AND MATH DOMAIN 5; BTB-POZ and MATH domain 5; T10F18.30; T10F18_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1EBV6", "url": "https://www.uniprot.org/uniprotkb/Q1EBV6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSE", "down_seq": "VIQGSNPDRVLSPTSSKSVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1EBV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1EBV6" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q1EBV6-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1ECF5-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "Q1ECF5-1", "length": 205, "uniprot_id": "PLI2B_ARATH", "protein_name": "LIM domain-containing protein PLIM2b", "refseq_ac": "NP_171683", "refseq_name": "GATA type zinc finger transcription factor family protein", "gene_name": "PLIM2B", "gene_names_uniprotkb": "PLIM2B; T1N6.19", "gene_names_refseq": "PLIM2b; T1N6.19; T1N6_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1ECF5", "url": "https://www.uniprot.org/uniprotkb/Q1ECF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QLFMEKGNYAHVLQAANHRR", "down_seq": "ASGNTLPPEPTEDVAVEAKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q1ECF5-1.180.180", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q1ECF5-1.183.183", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1ECF5-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q1ECF5-1", "length": 205, "uniprot_id": "PLI2B_ARATH", "protein_name": "LIM domain-containing protein PLIM2b", "refseq_ac": "NP_171683", "refseq_name": "GATA type zinc finger transcription factor family protein", "gene_name": "PLIM2B", "gene_names_uniprotkb": "PLIM2B; T1N6.19", "gene_names_refseq": "PLIM2b; T1N6.19; T1N6_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1ECF5", "url": "https://www.uniprot.org/uniprotkb/Q1ECF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FMEKGNYAHVLQAANHRRTA", "down_seq": "GNTLPPEPTEDVAVEAKEEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser180" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q1ECF5-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q1ECF5-1.183.183", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1ECF5-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "Q1ECF5-1", "length": 205, "uniprot_id": "PLI2B_ARATH", "protein_name": "LIM domain-containing protein PLIM2b", "refseq_ac": "NP_171683", "refseq_name": "GATA type zinc finger transcription factor family protein", "gene_name": "PLIM2B", "gene_names_uniprotkb": "PLIM2B; T1N6.19", "gene_names_refseq": "PLIM2b; T1N6.19; T1N6_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1ECF5", "url": "https://www.uniprot.org/uniprotkb/Q1ECF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KGNYAHVLQAANHRRTASGN", "down_seq": "LPPEPTEDVAVEAKEENGVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr183" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q1ECF5-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q1ECF5-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1ECF5-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q1ECF5-1", "length": 205, "uniprot_id": "PLI2B_ARATH", "protein_name": "LIM domain-containing protein PLIM2b", "refseq_ac": "NP_171683", "refseq_name": "GATA type zinc finger transcription factor family protein", "gene_name": "PLIM2B", "gene_names_uniprotkb": "PLIM2B; T1N6.19", "gene_names_refseq": "PLIM2b; T1N6.19; T1N6_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1ECF5", "url": "https://www.uniprot.org/uniprotkb/Q1ECF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGNFSKNFQPGKTEKPELTR", "down_seq": "PSKISSIFCGTQDKCAACEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr89" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q1ECF5-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1ECF5-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q1ECF5-1", "length": 205, "uniprot_id": "PLI2B_ARATH", "protein_name": "LIM domain-containing protein PLIM2b", "refseq_ac": "NP_171683", "refseq_name": "GATA type zinc finger transcription factor family protein", "gene_name": "PLIM2B", "gene_names_uniprotkb": "PLIM2B; T1N6.19", "gene_names_refseq": "PLIM2b; T1N6.19; T1N6_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1ECF5", "url": "https://www.uniprot.org/uniprotkb/Q1ECF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NFSKNFQPGKTEKPELTRTP", "down_seq": "KISSIFCGTQDKCAACEKTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1ECF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1ECF5" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser91" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q1ECF5-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1G3L1-1.184.184", "start_pos": 184, "end_pos": 184, "uniprot_canonical_ac": "Q1G3L1-1", "length": 269, "uniprot_id": "TIM21_ARATH", "protein_name": "Probable mitochondrial import inner membrane translocase subunit TIM21", "refseq_ac": "NP_001031562", "refseq_name": "import inner membrane translocase subunit", "gene_name": "TIM21", "gene_names_uniprotkb": "TIM21; F6N15; SD3", "gene_names_refseq": "SD3; SEGREGATION DISTORTION 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1G3L1", "url": "https://www.uniprot.org/uniprotkb/Q1G3L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VFDKALKRIQDDGQVRVRIG", "down_seq": "PIKGYGQETRNRAARQRIPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser184" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "184", "end_pos": "184" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1G3L1-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q1G3L1-1", "length": 269, "uniprot_id": "TIM21_ARATH", "protein_name": "Probable mitochondrial import inner membrane translocase subunit TIM21", "refseq_ac": "NP_001031562", "refseq_name": "import inner membrane translocase subunit", "gene_name": "TIM21", "gene_names_uniprotkb": "TIM21; F6N15; SD3", "gene_names_refseq": "SD3; SEGREGATION DISTORTION 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1G3L1", "url": "https://www.uniprot.org/uniprotkb/Q1G3L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MFKDKAEKEWKYTYLIVEIL", "down_seq": "PSPAKLMLESYLPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "site_lbl": "Thr255" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "184", "end_pos": "184" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q1G3L1-1.257.257", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1G3L1-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "Q1G3L1-1", "length": 269, "uniprot_id": "TIM21_ARATH", "protein_name": "Probable mitochondrial import inner membrane translocase subunit TIM21", "refseq_ac": "NP_001031562", "refseq_name": "import inner membrane translocase subunit", "gene_name": "TIM21", "gene_names_uniprotkb": "TIM21; F6N15; SD3", "gene_names_refseq": "SD3; SEGREGATION DISTORTION 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1G3L1", "url": "https://www.uniprot.org/uniprotkb/Q1G3L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDKAEKEWKYTYLIVEILTP", "down_seq": "PAKLMLESYLPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "site_lbl": "Ser257" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "184", "end_pos": "184" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q1G3L1-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1G3L1-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q1G3L1-1", "length": 269, "uniprot_id": "TIM21_ARATH", "protein_name": "Probable mitochondrial import inner membrane translocase subunit TIM21", "refseq_ac": "NP_001031562", "refseq_name": "import inner membrane translocase subunit", "gene_name": "TIM21", "gene_names_uniprotkb": "TIM21; F6N15; SD3", "gene_names_refseq": "SD3; SEGREGATION DISTORTION 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1G3L1", "url": "https://www.uniprot.org/uniprotkb/Q1G3L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRRSAIAIGRQSKSKLASFS", "down_seq": "ATQPCSGIPKSSKRVFSNSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "184", "end_pos": "184" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q1G3L1-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1G3L1-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q1G3L1-1", "length": 269, "uniprot_id": "TIM21_ARATH", "protein_name": "Probable mitochondrial import inner membrane translocase subunit TIM21", "refseq_ac": "NP_001031562", "refseq_name": "import inner membrane translocase subunit", "gene_name": "TIM21", "gene_names_uniprotkb": "TIM21; F6N15; SD3", "gene_names_refseq": "SD3; SEGREGATION DISTORTION 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1G3L1", "url": "https://www.uniprot.org/uniprotkb/Q1G3L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RSAIAIGRQSKSKLASFSSA", "down_seq": "QPCSGIPKSSKRVFSNSFLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1G3L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1G3L1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "184", "end_pos": "184" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q1G3L1-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1H583-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q1H583-1", "length": 391, "uniprot_id": "GDL18_ARATH", "protein_name": "GDSL esterase/lipase 22", "refseq_ac": "NP_175802", "refseq_name": "GDSL-like Lipase/Acylhydrolase superfamily protein", "gene_name": "GLL22", "gene_names_uniprotkb": "GLL22; F15I1.8", "gene_names_refseq": "F15I1.8; F15I1_8; GDSL lipase-like protein 22; GLL22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FLAKFMKIPLAIAPALQPNV", "down_seq": "VSRGASFAVEGATLLGAPVE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "Q1H583", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1H583#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1H583-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "Q1H583-1", "length": 391, "uniprot_id": "GDL18_ARATH", "protein_name": "GDSL esterase/lipase 22", "refseq_ac": "NP_175802", "refseq_name": "GDSL-like Lipase/Acylhydrolase superfamily protein", "gene_name": "GLL22", "gene_names_uniprotkb": "GLL22; F15I1.8", "gene_names_refseq": "F15I1.8; F15I1_8; GDSL lipase-like protein 22; GLL22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NDDFVAKSVFMIYIGANDYL", "down_seq": "FTKNNPTADASAQQAFVTSV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn165", "evidence": [ { "id": "Q1H583", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1H583#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1H583-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "Q1H583-1", "length": 391, "uniprot_id": "GDL18_ARATH", "protein_name": "GDSL esterase/lipase 22", "refseq_ac": "NP_175802", "refseq_name": "GDSL-like Lipase/Acylhydrolase superfamily protein", "gene_name": "GLL22", "gene_names_uniprotkb": "GLL22; F15I1.8", "gene_names_refseq": "F15I1.8; F15I1_8; GDSL lipase-like protein 22; GLL22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FYNAVLTRTQRNQNFRFFVT", "down_seq": "ASCCGVGSHDAYGCGLPNVH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn288", "evidence": [ { "id": "Q1H583", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1H583#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1H583-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "Q1H583-1", "length": 391, "uniprot_id": "GDL18_ARATH", "protein_name": "GDSL esterase/lipase 22", "refseq_ac": "NP_175802", "refseq_name": "GDSL-like Lipase/Acylhydrolase superfamily protein", "gene_name": "GLL22", "gene_names_uniprotkb": "GLL22; F15I1.8", "gene_names_refseq": "F15I1.8; F15I1_8; GDSL lipase-like protein 22; GLL22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1H583", "url": "https://www.uniprot.org/uniprotkb/Q1H583" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VRELTVYPVDEPMREFWVPP", "down_seq": "PATVHASDSSSSTSRGYEYY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr371", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PE39-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q1PE39-1", "length": 408, "uniprot_id": "MRS26_ARATH", "protein_name": "Magnesium transporter MRS2-6, mitochondrial", "refseq_ac": "NP_194587", "refseq_name": "magnesium transport 5", "gene_name": "MRS2-6", "gene_names_uniprotkb": "MRS2-6; MGT5; T5F17.30", "gene_names_refseq": "ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5; ATMGT5; MGT5; MRS2-6; T5F17.30; T5F17_30; magnesium transport 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE39", "url": "https://www.uniprot.org/uniprotkb/Q1PE39" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRKKGTAVKMNRMPSSLSPP", "down_seq": "PPCSAIVGGTGKSKKRRGGV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr32", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "32", "end_pos": "32" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PE39-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "Q1PE39-1", "length": 408, "uniprot_id": "MRS26_ARATH", "protein_name": "Magnesium transporter MRS2-6, mitochondrial", "refseq_ac": "NP_194587", "refseq_name": "magnesium transport 5", "gene_name": "MRS2-6", "gene_names_uniprotkb": "MRS2-6; MGT5; T5F17.30", "gene_names_refseq": "ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5; ATMGT5; MGT5; MRS2-6; T5F17.30; T5F17_30; magnesium transport 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PE39", "url": "https://www.uniprot.org/uniprotkb/Q1PE39" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRRNGLIHLMMLVNIGNYAI", "down_seq": "AGTVVVNLFGMNIPIGLYST", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr355", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "32", "end_pos": "32" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEC0-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "Q1PEC0-1", "length": 524, "uniprot_id": "PME42_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 42", "refseq_ac": "NP_192302", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME42", "gene_names_uniprotkb": "PME42; ARATH42; T24M8.6", "gene_names_refseq": "T24M8.6; T24M8_6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEC0", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEC0", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IIYIKTGIYDEIVAIENTKP", "down_seq": "LTLIGDGQDSTIITGNLSAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn265", "evidence": [ { "id": "Q1PEC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q1PEC0-1.281.281", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEC0-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "Q1PEC0-1", "length": 524, "uniprot_id": "PME42_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 42", "refseq_ac": "NP_192302", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME42", "gene_names_uniprotkb": "PME42; ARATH42; T24M8.6", "gene_names_refseq": "T24M8.6; T24M8_6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEC0", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEC0", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTKPNLTLIGDGQDSTIITG", "down_seq": "LSASNVRRTFYTATFASNGK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn281", "evidence": [ { "id": "Q1PEC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q1PEC0-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEC0-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "Q1PEC0-1", "length": 524, "uniprot_id": "PME42_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 42", "refseq_ac": "NP_192302", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME42", "gene_names_uniprotkb": "PME42; ARATH42; T24M8.6", "gene_names_refseq": "T24M8.6; T24M8_6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEC0", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEC0", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ITAQSRETKDDKSGFSIQNC", "down_seq": "ITASSDLDTATVKTYLGRPW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn412", "evidence": [ { "id": "Q1PEC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEC0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MARSNRCVPQ", "down_seq": "SSIVQIPIEEVFKTQLKSRW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn11", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QVFVPEPLFSEPPPPPKAPV", "down_seq": "VSLSPPPPPRSPSTSTPPRL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn66", "evidence": [ { "id": "Q1PEM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DDKALPAPIGLVLGIHQSTF", "down_seq": "YGELARATNKFSEANLLGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "site_lbl": "Thr172" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRNLVSLVGYCIAGAQRLLV", "down_seq": "EFVPNNTLEFHLHGKGRPTM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "site_lbl": "Tyr256" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAKVADFGLAKIALDTNTHV", "down_seq": "TRVMGTFGYLAPEYAASGKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "site_lbl": "Ser340" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q1PEM5-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q1PEM5-1.346.346", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q1PEM5-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKVADFGLAKIALDTNTHVS", "down_seq": "RVMGTFGYLAPEYAASGKLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "site_lbl": "Thr341" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q1PEM5-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q1PEM5-1.346.346", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q1PEM5-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGLAKIALDTNTHVSTRVMG", "down_seq": "FGYLAPEYAASGKLTEKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "site_lbl": "Thr346" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q1PEM5-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q1PEM5-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q1PEM5-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PEM5-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "Q1PEM5-1", "length": 513, "uniprot_id": "PERK3_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK3", "refseq_ac": "", "refseq_name": "", "gene_name": "PERK3", "gene_names_uniprotkb": "PERK3; MOB24.4", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DTNTHVSTRVMGTFGYLAPE", "down_seq": "AASGKLTEKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q1PEM5", "url": "https://www.uniprot.org/uniprotkb/Q1PEM5" } ], "site_lbl": "Tyr354" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q1PEM5-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q1PEM5-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q1PEM5-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ALYDLASFRQYYQESLNKKL", "down_seq": "ISSGGSDNPWFFFGISYSGA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn162", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.253.253", "start_pos": 253, "end_pos": 253, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TNKLLELGLKVKNKAVKSLF", "down_seq": "ATELDVDADFLYLTADAAVM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn253", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MAFQYGNPDKLCVPLVEAKK", "down_seq": "GSDLVVTYSTYVREYCMRIW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn293", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AIVSFSTLSHALLHPSSVSH", "down_seq": "VSRSRYYMTTNELWFNQTLD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn35", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q1PF50-1.51.51", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TELGYFQVAPKYDSVRSHQI", "down_seq": "TTFHLDLCKSLFGKDVYPKV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn365", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DATNLYYGGDRLAATKIIFT", "down_seq": "GSEDPWRHASKQNSTHEMPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn406", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q1PF50-1.419.419", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.419.419", "start_pos": 419, "end_pos": 419, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ATKIIFTNGSEDPWRHASKQ", "down_seq": "STHEMPSYIIKCRNCGHGSD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn419", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q1PF50-1.406.406", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HGSDIRGCPQSPMVIEGKSN", "down_seq": "CSLPDYVNKVRQQMVEHIDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn456", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SVSHNVSRSRYYMTTNELWF", "down_seq": "QTLDHESPNDHRKFRQRYYE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "Q1PF50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1PF50#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q1PF50-1.35.35", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1PF50-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q1PF50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PF50" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q1PF50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PF50", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DYINVLAKKFQAGVVSLEHR", "down_seq": "YGKSSPFNSLATENLKYLSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1PF50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PF50" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr119" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q1PF50-1.120.120", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1PF50-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "Q1PF50-1", "length": 489, "uniprot_id": "EDA2_ARATH", "protein_name": "Probable serine protease EDA2", "refseq_ac": "NP_179399", "refseq_name": "Serine carboxypeptidase S28 family protein", "gene_name": "EDA2", "gene_names_uniprotkb": "EDA2; T27K22.5", "gene_names_refseq": "EDA2; T27K22.5; T27K22_5; embryo sac development arrest 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1PF50", "url": "https://www.uniprot.org/uniprotkb/Q1PF50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q1PF50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PF50" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q1PF50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PF50", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YINVLAKKFQAGVVSLEHRY", "down_seq": "GKSSPFNSLATENLKYLSSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1PF50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1PF50" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr120" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "120", "end_pos": "120" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q1PF50-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29Q26-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q29Q26-1", "length": 344, "uniprot_id": "AKR2B_ARATH", "protein_name": "Ankyrin repeat domain-containing protein 2B", "refseq_ac": "NP_179331", "refseq_name": "ankyrin repeat-containing 2B", "gene_name": "AKR2B", "gene_names_uniprotkb": "AKR2B; F5J6.15", "gene_names_refseq": "AKR2B; F5J6.15; F5J6_15; ankyrin repeat-containing 2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q29Q26", "url": "https://www.uniprot.org/uniprotkb/Q29Q26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ESKSTTKPESGSGAPPSPSP", "down_seq": "DPGLDFNAFDFSGMAGILND", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr42", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "38", "end_pos": "38" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q29Q26-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q29Q26-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "Q29Q26-1", "length": 344, "uniprot_id": "AKR2B_ARATH", "protein_name": "Ankyrin repeat domain-containing protein 2B", "refseq_ac": "NP_179331", "refseq_name": "ankyrin repeat-containing 2B", "gene_name": "AKR2B", "gene_names_uniprotkb": "AKR2B; F5J6.15", "gene_names_refseq": "AKR2B; F5J6.15; F5J6_15; ankyrin repeat-containing 2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q29Q26", "url": "https://www.uniprot.org/uniprotkb/Q29Q26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTKEESKSTTKPESGSGAPP", "down_seq": "PSPTDPGLDFNAFDFSGMAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "38", "end_pos": "38" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q29Q26-1.42.42", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29Q26-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "Q29Q26-1", "length": 344, "uniprot_id": "AKR2B_ARATH", "protein_name": "Ankyrin repeat domain-containing protein 2B", "refseq_ac": "NP_179331", "refseq_name": "ankyrin repeat-containing 2B", "gene_name": "AKR2B", "gene_names_uniprotkb": "AKR2B; F5J6.15", "gene_names_refseq": "AKR2B; F5J6.15; F5J6_15; ankyrin repeat-containing 2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q29Q26", "url": "https://www.uniprot.org/uniprotkb/Q29Q26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGILNDPSIKELAEQIAKDP", "down_seq": "FNQLAEQLQRSVPTGSHEGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q29Q26", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29Q26" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "38", "end_pos": "38" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2PE59-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "Q2PE59-1", "length": 156, "uniprot_id": "LTG26_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 26", "refseq_ac": "NP_567445", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG26", "gene_names_uniprotkb": "LTPG26; XYLP8; XYP14; dl3445w", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2PE59", "url": "https://www.uniprot.org/uniprotkb/Q2PE59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2PE59", "url": "https://www.uniprot.org/uniprotkb/Q2PE59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TPPASRCHSGSSVNSHSEHG", "down_seq": "GSKTVPREKSSSDGSIKFSF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn117", "evidence": [ { "id": "Q2PE59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2PE59#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2PE59-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q2PE59-1", "length": 156, "uniprot_id": "LTG26_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 26", "refseq_ac": "NP_567445", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG26", "gene_names_uniprotkb": "LTPG26; XYLP8; XYP14; dl3445w", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2PE59", "url": "https://www.uniprot.org/uniprotkb/Q2PE59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2PE59", "url": "https://www.uniprot.org/uniprotkb/Q2PE59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QSSCTNVLISMAPCLSFITQ", "down_seq": "TSLPSQQCCNQLAHVVRYSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn43", "evidence": [ { "id": "Q2PE59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2PE59#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2PE59-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q2PE59-1", "length": 156, "uniprot_id": "LTG26_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 26", "refseq_ac": "NP_567445", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG26", "gene_names_uniprotkb": "LTPG26; XYLP8; XYP14; dl3445w", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2PE59", "url": "https://www.uniprot.org/uniprotkb/Q2PE59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2PE59", "url": "https://www.uniprot.org/uniprotkb/Q2PE59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSECLCQVLDGGGSQLGINV", "down_seq": "ETQALALPKACHVETPPASR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn82", "evidence": [ { "id": "Q2PE59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2PE59#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2PE70-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q2PE70-1", "length": 208, "uniprot_id": "LTPG4_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 4", "refseq_ac": "NP_192607", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG4", "gene_names_uniprotkb": "LTPG4; T3F12.2; XYLP3; XYP3", "gene_names_refseq": "LTPG4; T3F12.2; T3F12_2; glycosylphosphatidylinositol-anchored lipid protein transfer 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2PE70", "url": "https://www.uniprot.org/uniprotkb/Q2PE70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2PE70", "url": "https://www.uniprot.org/uniprotkb/Q2PE70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YNPQCICAGLVSAGEMGIEL", "down_seq": "STRALATPKACKLSIAPPHC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "Q2PE70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2PE70#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2PE70-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q2PE70-1", "length": 208, "uniprot_id": "LTPG4_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 4", "refseq_ac": "NP_192607", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG4", "gene_names_uniprotkb": "LTPG4; T3F12.2; XYLP3; XYP3", "gene_names_refseq": "LTPG4; T3F12.2; T3F12_2; glycosylphosphatidylinositol-anchored lipid protein transfer 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2PE70", "url": "https://www.uniprot.org/uniprotkb/Q2PE70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2PE70", "url": "https://www.uniprot.org/uniprotkb/Q2PE70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSFVLLLLSSSSLVTPIHAR", "down_seq": "KSNPAKSPVGAPAPGPSSSD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn27", "evidence": [ { "id": "Q2PE70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2PE70#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2PE70-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q2PE70-1", "length": 208, "uniprot_id": "LTPG4_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 4", "refseq_ac": "NP_192607", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG4", "gene_names_uniprotkb": "LTPG4; T3F12.2; XYLP3; XYP3", "gene_names_refseq": "LTPG4; T3F12.2; T3F12_2; glycosylphosphatidylinositol-anchored lipid protein transfer 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2PE70", "url": "https://www.uniprot.org/uniprotkb/Q2PE70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2PE70", "url": "https://www.uniprot.org/uniprotkb/Q2PE70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DCSTVIYSMMDCLGYLGVGS", "down_seq": "ETKPEKSCCTGIETVLQYNP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn67", "evidence": [ { "id": "Q2PE70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q2PE70#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38867-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "Q38867-1", "length": 176, "uniprot_id": "CP19C_ARATH", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP19-3", "refseq_ac": "NP_001319764", "refseq_name": "rotamase cyclophilin 2", "gene_name": "CYP19-3", "gene_names_uniprotkb": "CYP19-3; CYP4; F18O21.30; ROC2", "gene_names_refseq": "ROC2; ROTAMASE CYCLOPHILIN 2; ROTAMASE CYP 2; rotamase cyclophilin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38867", "url": "https://www.uniprot.org/uniprotkb/Q38867" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q38867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38867" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q38867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38867", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVFGKVVDGYNVVKAMEDVG", "down_seq": "DMGNPSERVVIEDCGELKNP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38867" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser154" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38907-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q38907-1", "length": 284, "uniprot_id": "XTH25_ARATH", "protein_name": "Probable xyloglucan endotransglucosylase/hydrolase protein 25", "refseq_ac": "NP_568859", "refseq_name": "xyloglucan endotransglucosylase/hydrolase 25", "gene_name": "XTH25", "gene_names_uniprotkb": "XTH25; EXGT-A5; MUA2.12; XTR3", "gene_names_refseq": "MUA2.12; MUA2_12; XTH25; XTR3; xyloglucan endotransglucosylase/hydrolase 25; xyloglucan endotransglycosylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38907", "url": "https://www.uniprot.org/uniprotkb/Q38907" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38907", "url": "https://www.uniprot.org/uniprotkb/Q38907", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AYYLKSKGDTWDEIDFEFLG", "down_seq": "LTGDPYTMHTNVYTQGKGDR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "Q38907", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38907#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38908-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q38908-1", "length": 343, "uniprot_id": "XTH30_ARATH", "protein_name": "Probable xyloglucan endotransglucosylase/hydrolase protein 30", "refseq_ac": "NP_174496", "refseq_name": "xyloglucan endotransglucosylase/hydrolase 30", "gene_name": "XTH30", "gene_names_uniprotkb": "XTH30; F3C3.5; XTR4", "gene_names_refseq": "F3C3.5; F3C3_5; XTH30; XTR4; XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN; xyloglucan endotransglucosylase/hydrolase 30; xyloglucan endotransglycosylase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38908", "url": "https://www.uniprot.org/uniprotkb/Q38908" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38908", "url": "https://www.uniprot.org/uniprotkb/Q38908", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IEFLGNIKGKPWRFQTNLYG", "down_seq": "GSTHRGREERYRLWFDPSKE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn132", "evidence": [ { "id": "Q38908", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38908#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38910-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "Q38910-1", "length": 286, "uniprot_id": "XTH23_ARATH", "protein_name": "Probable xyloglucan endotransglucosylase/hydrolase protein 23", "refseq_ac": "NP_194311", "refseq_name": "xyloglucan endotransglycosylase 6", "gene_name": "XTH23", "gene_names_uniprotkb": "XTH23; F14M19.90; XTR6", "gene_names_refseq": "F14M19.90; F14M19_90; XTH23; XTR6; xyloglucan endotransglucosylase/hydrolase 23; xyloglucan endotransglycosylase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38910", "url": "https://www.uniprot.org/uniprotkb/Q38910" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38910", "url": "https://www.uniprot.org/uniprotkb/Q38910", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AYYLKSPGSTWDEIDFEFLG", "down_seq": "LSGDPYTLHTNVFTQGKGDR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn108", "evidence": [ { "id": "Q38910", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38910#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "233", "end_pos": "233" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38910-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "Q38910-1", "length": 286, "uniprot_id": "XTH23_ARATH", "protein_name": "Probable xyloglucan endotransglucosylase/hydrolase protein 23", "refseq_ac": "NP_194311", "refseq_name": "xyloglucan endotransglycosylase 6", "gene_name": "XTH23", "gene_names_uniprotkb": "XTH23; F14M19.90; XTR6", "gene_names_refseq": "F14M19.90; F14M19_90; XTH23; XTR6; xyloglucan endotransglucosylase/hydrolase 23; xyloglucan endotransglycosylase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38910", "url": "https://www.uniprot.org/uniprotkb/Q38910" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38910", "url": "https://www.uniprot.org/uniprotkb/Q38910", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SYRGFNEEACVVINGQSSCP", "down_seq": "VSGQGSTGSWLSQELDSTGQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn233", "evidence": [ { "id": "Q38910", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38910#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "233", "end_pos": "233" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38924-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "Q38924-1", "length": 469, "uniprot_id": "PPA12_ARATH", "protein_name": "Fe(3+)-Zn(2+) purple acid phosphatase 12", "refseq_ac": "NP_180287", "refseq_name": "purple acid phosphatase 12", "gene_name": "PAP12", "gene_names_uniprotkb": "PAP12; At10; Ath1; PAP1; T22O13.4", "gene_names_refseq": "ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1; ATPAP12; ATPAP1; PAP12; PAP1; PURPLE ACID PHOSPHATASE 12; PURPLE ACID PHOSPHATASE 1; SECRETED PURPLE ACID PHOSPHATASE PRECURSOR; T22O13.4; T22O13_4; purple acid phosphatase 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CENEKSRKQAEATVNTYRFF", "down_seq": "YTSGYIHHCLIDDLEFDTKY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "Q38924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38924#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "429", "end_pos": "429" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38924-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q38924-1", "length": 469, "uniprot_id": "PPA12_ARATH", "protein_name": "Fe(3+)-Zn(2+) purple acid phosphatase 12", "refseq_ac": "NP_180287", "refseq_name": "purple acid phosphatase 12", "gene_name": "PAP12", "gene_names_uniprotkb": "PAP12; At10; Ath1; PAP1; T22O13.4", "gene_names_refseq": "ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1; ATPAP12; ATPAP1; PAP12; PAP1; PURPLE ACID PHOSPHATASE 12; PURPLE ACID PHOSPHATASE 1; SECRETED PURPLE ACID PHOSPHATASE PRECURSOR; T22O13.4; T22O13_4; purple acid phosphatase 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GPDVPYTFGLIGDLGQTYDS", "down_seq": "STLSHYEMNPGKGQAVLFVG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn176", "evidence": [ { "id": "Q38924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38924#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "429", "end_pos": "429" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38924-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "Q38924-1", "length": 469, "uniprot_id": "PPA12_ARATH", "protein_name": "Fe(3+)-Zn(2+) purple acid phosphatase 12", "refseq_ac": "NP_180287", "refseq_name": "purple acid phosphatase 12", "gene_name": "PAP12", "gene_names_uniprotkb": "PAP12; At10; Ath1; PAP1; T22O13.4", "gene_names_refseq": "ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1; ATPAP12; ATPAP1; PAP12; PAP1; PURPLE ACID PHOSPHATASE 12; PURPLE ACID PHOSPHATASE 1; SECRETED PURPLE ACID PHOSPHATASE PRECURSOR; T22O13.4; T22O13_4; purple acid phosphatase 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSYGIYTPQYKWLEKELQGV", "down_seq": "RTETPWLIVLVHSPFYSSYV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn307", "evidence": [ { "id": "Q38924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38924#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "429", "end_pos": "429" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38924-1.429.429", "start_pos": 429, "end_pos": 429, "uniprot_canonical_ac": "Q38924-1", "length": 469, "uniprot_id": "PPA12_ARATH", "protein_name": "Fe(3+)-Zn(2+) purple acid phosphatase 12", "refseq_ac": "NP_180287", "refseq_name": "purple acid phosphatase 12", "gene_name": "PAP12", "gene_names_uniprotkb": "PAP12; At10; Ath1; PAP1; T22O13.4", "gene_names_refseq": "ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1; ATPAP12; ATPAP1; PAP12; PAP1; PURPLE ACID PHOSPHATASE 12; PURPLE ACID PHOSPHATASE 1; SECRETED PURPLE ACID PHOSPHATASE PRECURSOR; T22O13.4; T22O13_4; purple acid phosphatase 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38924", "url": "https://www.uniprot.org/uniprotkb/Q38924", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QPKYSAFREASFGHGLLEIK", "down_seq": "RTHAYFSWNRNQDGNAVAAD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn429", "evidence": [ { "id": "Q38924", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38924#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "429", "end_pos": "429" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38933-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "Q38933-1", "length": 501, "uniprot_id": "LCYB_ARATH", "protein_name": "Lycopene beta cyclase, chloroplastic", "refseq_ac": "NP_001078131", "refseq_name": "lycopene cyclase", "gene_name": "LCY1", "gene_names_uniprotkb": "LCY1; F14P13.17; LCYB; LYC; SZL1", "gene_names_refseq": "AtLCY; LYCOPENE BETA-CYCLASE; LYC; lycopene cyclase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38933", "url": "https://www.uniprot.org/uniprotkb/Q38933" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VIPMGGPLPVLPQRVVGIGG", "down_seq": "AGMVHPSTGYMVARTLAAAP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr356", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "356", "end_pos": "356" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38933-1.451.451", "start_pos": 451, "end_pos": 451, "uniprot_canonical_ac": "Q38933-1", "length": 501, "uniprot_id": "LCYB_ARATH", "protein_name": "Lycopene beta cyclase, chloroplastic", "refseq_ac": "NP_001078131", "refseq_name": "lycopene cyclase", "gene_name": "LCY1", "gene_names_uniprotkb": "LCY1; F14P13.17; LCYB; LYC; SZL1", "gene_names_refseq": "AtLCY; LYCOPENE BETA-CYCLASE; LYC; lycopene cyclase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38933", "url": "https://www.uniprot.org/uniprotkb/Q38933" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Lutein accumulation in the absence of zeaxanthin restores nonphotochemical quenching in the Arabidopsis thaliana npq1 mutant.", "journal": "The Plant cell", "date": "2009-06", "authors": "Li Zhirong, Ahn Tae Kyu, Avenson Thomas J, Ballottari Matteo, Cruz Jeffrey A, Kramer David M, Bassi Roberto, Fleming Graham R, Keasling Jay D, Niyogi Krishna K", "evidence": [ { "database": "UniProtKB", "id": "Q38933", "url": "https://www.uniprot.org/uniprotkb/Q38933" } ], "reference": [ { "type": "PubMed", "id": "19549928", "url": "https://glygen.org/publication/PubMed/19549928" } ] } ], "crossref": [ { "id": "Q38933", "url": "https://www.uniprot.org/uniprotkb/Q38933", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19549928", "url": "https://glygen.org/publication/PubMed/19549928", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LDATRRFFDAFFDLQPHYWH", "down_seq": "FLSSRLFLPELLVFGLSLFS", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In szl1; slight reduction in plant growth, increased content of lutein, and decreased content of xanthophyll pigments (violaxanthin, antheraxanthin and zeaxanthin).", "evidence": [ { "database": "UniProtKB", "id": "Q38933", "url": "https://www.uniprot.org/uniprotkb/Q38933" }, { "database": "PubMed", "id": "19549928", "url": "https://glygen.org/publication/PubMed/19549928" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "356", "end_pos": "356" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QMATRRVDKAKEFVKRDMEV", "down_seq": "VKVISISSDKYSLSMRDVDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Tyr267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q38953-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q38953-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q38953-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVDKAKEFVKRDMEVYVKVI", "down_seq": "ISSDKYSLSMRDVDQNTGRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q38953-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q38953-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q38953-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FVKRDMEVYVKVISISSDKY", "down_seq": "LSMRDVDQNTGRDLIPLRKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q38953-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q38953-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q38953-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRDMEVYVKVISISSDKYSL", "down_seq": "MRDVDQNTGRDLIPLRKPSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser281" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q38953-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q38953-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q38953-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q38953-1.300.300", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSMRDVDQNTGRDLIPLRKP", "down_seq": "DEDDSSRSNPSYRTKDGQVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser300" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q38953-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIRIVEENDVAPSRRPLKKM", "down_seq": "SPERWEAKQLIASGVLRVDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser346" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q38953-1.347.347", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRIVEENDVAPSRRPLKKMS", "down_seq": "PERWEAKQLIASGVLRVDEF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser347" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q38953-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.411.411", "start_pos": 411, "end_pos": 411, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" }, { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" }, { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" }, { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EMNEDEPAFLQGQTRYSVDM", "down_seq": "PVKIFKNPEGSLSRAAALQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser411" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.666.666", "start_pos": 666, "end_pos": 666, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VLFGLLKKLMKRRLDLRLIV", "down_seq": "SATLDAEKFSGYFFNCNIFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr666" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q38953-1.667.667", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38953-1.667.667", "start_pos": 667, "end_pos": 667, "uniprot_canonical_ac": "Q38953-1", "length": 1168, "uniprot_id": "DEAH5_ARATH", "protein_name": "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5", "refseq_ac": "NP_189288", "refseq_name": "ATP-dependent RNA helicase", "gene_name": "MFE16.8", "gene_names_uniprotkb": "MFE16.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38953", "url": "https://www.uniprot.org/uniprotkb/Q38953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LFGLLKKLMKRRLDLRLIVT", "down_seq": "ATLDAEKFSGYFFNCNIFTI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38953" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser667" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "667", "end_pos": "667" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q38953-1.666.666", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38960-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q38960-1", "length": 346, "uniprot_id": "LWD2_ARATH", "protein_name": "WD repeat-containing protein LWD2", "refseq_ac": "NP_189298", "refseq_name": "Transducin/WD40 repeat-like superfamily protein", "gene_name": "LWD2", "gene_names_uniprotkb": "LWD2; AN11B; MLJ15.3; orf10", "gene_names_refseq": "LIGHT-REGULATED WD 2; LWD2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38960", "url": "https://www.uniprot.org/uniprotkb/Q38960" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q38960", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38960" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q38960", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38960", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVTS", "down_seq": "DQIQNGSEEQSKRSEIYTYE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38960", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38960" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38967-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "Q38967-1", "length": 493, "uniprot_id": "AAP2_ARATH", "protein_name": "Amino acid permease 2", "refseq_ac": "NP_196484", "refseq_name": "amino acid permease 2", "gene_name": "AAP2", "gene_names_uniprotkb": "AAP2; T2K12.6; T5E8.20", "gene_names_refseq": "AAP2; T2K12.6; amino acid permease 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38967", "url": "https://www.uniprot.org/uniprotkb/Q38967" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38967" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q38967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38967", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVTLYSSTLLSDCYRTGDAV", "down_seq": "GKRNYTYMDAVRSILGGFKF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38967", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38967" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser110" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39025-1.201.201", "start_pos": 201, "end_pos": 201, "uniprot_canonical_ac": "Q39025-1", "length": 376, "uniprot_id": "MPK5_ARATH", "protein_name": "Mitogen-activated protein kinase 5", "refseq_ac": "NP_567378", "refseq_name": "MAP kinase 5", "gene_name": "MPK5", "gene_names_uniprotkb": "MPK5; F8L21.120", "gene_names_refseq": "ATMPK5; F8L21.120; F8L21_120; MAP kinase 5; MPK5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CDLKITDFGLARTTSETEYM", "down_seq": "EYVVTRWYRAPELLLNSSEY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "site_lbl": "Thr201" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39025-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39025-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39025-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q39025-1", "length": 376, "uniprot_id": "MPK5_ARATH", "protein_name": "Mitogen-activated protein kinase 5", "refseq_ac": "NP_567378", "refseq_name": "MAP kinase 5", "gene_name": "MPK5", "gene_names_uniprotkb": "MPK5; F8L21.120", "gene_names_refseq": "ATMPK5; F8L21.120; F8L21_120; MAP kinase 5; MPK5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LKITDFGLARTTSETEYMTE", "down_seq": "VVTRWYRAPELLLNSSEYTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "site_lbl": "Tyr203" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39025-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39025-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39025-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "Q39025-1", "length": 376, "uniprot_id": "MPK5_ARATH", "protein_name": "Mitogen-activated protein kinase 5", "refseq_ac": "NP_567378", "refseq_name": "MAP kinase 5", "gene_name": "MPK5", "gene_names_uniprotkb": "MPK5; F8L21.120", "gene_names_refseq": "ATMPK5; F8L21.120; F8L21_120; MAP kinase 5; MPK5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TDFGLARTTSETEYMTEYVV", "down_seq": "RWYRAPELLLNSSEYTSAID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "site_lbl": "Thr206" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q39025-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39025-1.203.203", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39048-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "Q39048-1", "length": 421, "uniprot_id": "CER2_ARATH", "protein_name": "Protein ECERIFERUM 2", "refseq_ac": "NP_194182", "refseq_name": "HXXXD-type acyl-transferase family protein", "gene_name": "CER2", "gene_names_uniprotkb": "CER2; F22K18.290", "gene_names_refseq": "CER2; ECERIFERUM 2; F22K18.290; F22K18_290; VC-2; VC2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39048", "url": "https://www.uniprot.org/uniprotkb/Q39048" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39048", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39048" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39048", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39048", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MKTLGQLVSGHAPTKPVYPK", "down_seq": "PELTSHARNDGEAISIEKID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39048", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39048" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr198" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "259", "end_pos": "259" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39048-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q39048-1", "length": 421, "uniprot_id": "CER2_ARATH", "protein_name": "Protein ECERIFERUM 2", "refseq_ac": "NP_194182", "refseq_name": "HXXXD-type acyl-transferase family protein", "gene_name": "CER2", "gene_names_uniprotkb": "CER2; F22K18.290", "gene_names_refseq": "CER2; ECERIFERUM 2; F22K18.290; F22K18_290; VC-2; VC2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39048", "url": "https://www.uniprot.org/uniprotkb/Q39048" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q39048", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39048" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q39048", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39048", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSLNHIDSLMAKYTTRDQPF", "down_seq": "EVDILYALIWKSLLNIRGET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39048", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39048" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser259" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "259", "end_pos": "259" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39097-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "Q39097-1", "length": 436, "uniprot_id": "ERF1X_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-1", "refseq_ac": "NP_001032029", "refseq_name": "eukaryotic release factor 1-1", "gene_name": "ERF1-1", "gene_names_uniprotkb": "ERF1-1; MCA23.22", "gene_names_refseq": "AteRF1-1; ERF1-1; EUKARYOTIC RELEASE FACTOR 1; MCA23.22; MCA23_22; eukaryotic release factor 1-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39097", "url": "https://www.uniprot.org/uniprotkb/Q39097" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Translation termination in Arabidopsis thaliana: characterisation of three versions of release factor 1.", "journal": "Gene", "date": "2004-10-27", "authors": "Chapman Bernice, Brown Chris", "evidence": [ { "database": "UniProtKB", "id": "Q39097", "url": "https://www.uniprot.org/uniprotkb/Q39097" } ], "reference": [ { "type": "PubMed", "id": "15474304", "url": "https://glygen.org/publication/PubMed/15474304" } ] } ], "crossref": [ { "id": "Q39097", "url": "https://www.uniprot.org/uniprotkb/Q39097", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15474304", "url": "https://glygen.org/publication/PubMed/15474304", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "GNTREVLHKFSVDLPKKHGR", "down_seq": "GQSALRFARLRMEKRHNYVR", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of peptidyl-tRNA hydrolytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39097", "url": "https://www.uniprot.org/uniprotkb/Q39097" }, { "database": "PubMed", "id": "15474304", "url": "https://glygen.org/publication/PubMed/15474304" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "435", "end_pos": "435" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39097-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "Q39097-1", "length": 436, "uniprot_id": "ERF1X_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-1", "refseq_ac": "NP_001032029", "refseq_name": "eukaryotic release factor 1-1", "gene_name": "ERF1-1", "gene_names_uniprotkb": "ERF1-1; MCA23.22", "gene_names_refseq": "AteRF1-1; ERF1-1; EUKARYOTIC RELEASE FACTOR 1; MCA23.22; MCA23_22; eukaryotic release factor 1-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39097", "url": "https://www.uniprot.org/uniprotkb/Q39097" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGFGGIGGILRYQLDMTAFD", "down_seq": "EDGEALDDDSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "435", "end_pos": "435" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q39097-1.435.435", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39097-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q39097-1", "length": 436, "uniprot_id": "ERF1X_ARATH", "protein_name": "Eukaryotic peptide chain release factor subunit 1-1", "refseq_ac": "NP_001032029", "refseq_name": "eukaryotic release factor 1-1", "gene_name": "ERF1-1", "gene_names_uniprotkb": "ERF1-1; MCA23.22", "gene_names_refseq": "AteRF1-1; ERF1-1; EUKARYOTIC RELEASE FACTOR 1; MCA23.22; MCA23_22; eukaryotic release factor 1-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39097", "url": "https://www.uniprot.org/uniprotkb/Q39097" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RYQLDMTAFDSEDGEALDDD", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39097" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser435" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "435", "end_pos": "435" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q39097-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.101.101", "start_pos": 101, "end_pos": 101, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGLSADPETFARNRELEVIH", "down_seq": "RWAMLGALGCVFPELLARNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser101" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSSPAFAGKAVKPAASDVLG", "down_seq": "GRVTMRKTVAKPKGPSGSPW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q39141-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q39141-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q39141-1.46.46", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KAVKPAASDVLGSGRVTMRK", "down_seq": "VAKPKGPSGSPWYGSDRVKY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ], "site_lbl": "Thr36" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q39141-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q39141-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39141-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q39141-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q39141-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVLGSGRVTMRKTVAKPKGP", "down_seq": "GSPWYGSDRVKYLGPFSGEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q39141-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q39141-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39141-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39141-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q39141-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A comprehensive differential proteomic study of nitrate deprivation in Arabidopsis reveals complex regulatory networks of plant nitrogen responses.", "journal": "Journal of proteome research", "date": "2012-04-06", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "22329444", "url": "https://glygen.org/publication/PubMed/22329444" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22329444", "url": "https://glygen.org/publication/PubMed/22329444", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGSGRVTMRKTVAKPKGPSG", "down_seq": "PWYGSDRVKYLGPFSGEPPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "22329444", "url": "https://glygen.org/publication/PubMed/22329444" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q39141-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q39141-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39141-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39141-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39141-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GRVTMRKTVAKPKGPSGSPW", "down_seq": "GSDRVKYLGPFSGEPPSYLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr49" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q39141-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39141-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39141-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39141-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39141-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q39141-1", "length": 265, "uniprot_id": "Q39141_ARATH", "protein_name": "Chlorophyll a-b binding protein, chloroplastic", "refseq_ac": "NP_565786", "refseq_name": "photosystem II light harvesting complex protein B1B2", "gene_name": "LHB1B2", "gene_names_uniprotkb": "LHB1B2; F13P17.32; LHCB1.5", "gene_names_refseq": "F13P17.32; LHB1B2; LHCB1.5; PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5; photosystem II light harvesting complex gene B1B2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39141", "url": "https://www.uniprot.org/uniprotkb/Q39141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A comprehensive differential proteomic study of nitrate deprivation in Arabidopsis reveals complex regulatory networks of plant nitrogen responses.", "journal": "Journal of proteome research", "date": "2012-04-06", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "22329444", "url": "https://glygen.org/publication/PubMed/22329444" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22329444", "url": "https://glygen.org/publication/PubMed/22329444", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTMRKTVAKPKGPSGSPWYG", "down_seq": "DRVKYLGPFSGEPPSYLTGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39141" }, { "database": "PubMed", "id": "22329444", "url": "https://glygen.org/publication/PubMed/22329444" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q39141-1.36.36", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q39141-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39141-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39141-1.49.49", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39165-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q39165-1", "length": 199, "uniprot_id": "OLEO2_ARATH", "protein_name": "Oleosin 21.2 kDa", "refseq_ac": "", "refseq_name": "", "gene_name": "MPO12.17", "gene_names_uniprotkb": "MPO12.17", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39165", "url": "https://www.uniprot.org/uniprotkb/Q39165" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites.", "journal": "Plant methods", "date": "2005-11-01", "authors": "Wolschin Florian, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "Q39165", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39165" } ], "reference": [ { "type": "PubMed", "id": "16270910", "url": "https://glygen.org/publication/PubMed/16270910" } ] } ], "crossref": [ { "id": "Q39165", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39165", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16270910", "url": "https://glygen.org/publication/PubMed/16270910", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MADTHRVDRTDRHFQFQ", "down_seq": "PYEGGRGQGQYEGDRGYGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39165", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39165" }, { "database": "PubMed", "id": "16270910", "url": "https://glygen.org/publication/PubMed/16270910" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" }, { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALDTPELDSKKGKKEQKLKL", "down_seq": "DSDEEESEKKKSKKKDKKRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39189-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q39189-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q39189-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" }, { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTPELDSKKGKKEQKLKLSD", "down_seq": "DEEESEKKKSKKKDKKRKAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39189-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39189-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39189-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.450.450", "start_pos": 450, "end_pos": 450, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YIHRSGRTGRAGNTGVAVTL", "down_seq": "DSRKSSVSRIEKEAGIKFEH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr450" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39189-1.452.452", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39189-1.455.455", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39189-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q39189-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.452.452", "start_pos": 452, "end_pos": 452, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HRSGRTGRAGNTGVAVTLYD", "down_seq": "RKSSVSRIEKEAGIKFEHLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser452" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39189-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39189-1.455.455", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39189-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39189-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.455.455", "start_pos": 455, "end_pos": 455, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRTGRAGNTGVAVTLYDSRK", "down_seq": "SVSRIEKEAGIKFEHLAAPQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser455" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q39189-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39189-1.452.452", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39189-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39189-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTGRAGNTGVAVTLYDSRKS", "down_seq": "VSRIEKEAGIKFEHLAAPQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser456" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q39189-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39189-1.452.452", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39189-1.455.455", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39189-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.458.458", "start_pos": 458, "end_pos": 458, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRAGNTGVAVTLYDSRKSSV", "down_seq": "RIEKEAGIKFEHLAAPQPDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser458" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q39189-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q39189-1.452.452", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39189-1.455.455", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39189-1.456.456", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" }, { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSKKGKKEQKLKLSDSDEEE", "down_seq": "EKKKSKKKDKKRKASEEEDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q39189-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39189-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39189-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKEQKLKLSDSDEEESEKKK", "down_seq": "KKKDKKRKASEEEDEVKSDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q39189-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q39189-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39189-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q39189-1.70.70", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39189-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "Q39189-1", "length": 671, "uniprot_id": "RH7_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "refseq_ac": "NP_201025", "refseq_name": "DEAD box RNA helicase (PRH75)", "gene_name": "RH7", "gene_names_uniprotkb": "RH7; MMI9.2; PRH75", "gene_names_refseq": "MMI9.2; MMI9_2; PRH75; RNA HELICASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKSKKKDKKRKASEEEDEVK", "down_seq": "DSSSEKKKSSKKVKLGVEDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39189", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39189" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser70" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q39189-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39202-1.100.100", "start_pos": 100, "end_pos": 100, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SDKTIVWHAQAVNTTTGLVP", "down_seq": "GSKVTLTADGGLVIADPRGQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn100", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q39202-1.92.92", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSFENPTDTLLPNQNIEVGR", "down_seq": "LSSRRTETSFKKGRFSLRLE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn178", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SQYYESNTNDPNNPGIQLVF", "down_seq": "QSGEIYVLQRNNSRFVVKDR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn240", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q39202-1.251.251", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NNPGIQLVFNQSGEIYVLQR", "down_seq": "NSRFVVKDRDPDFSIAAPFY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn251", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q39202-1.240.240", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IHLVLILQLQTFFVFSQNIR", "down_seq": "GSVPVGESLTASESQQISSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn29", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSNEYGDCLPDFEMQTCRPE", "down_seq": "QTANSDVNLYEFITLEKTNW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn361", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PLSHGERSPRGDSDTFIKVR", "down_seq": "RSIADVPVTGNRAKKLDWLI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn446", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39202-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q39202-1", "length": 832, "uniprot_id": "RLK1_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase RLK1", "refseq_ac": "NP_001318851", "refseq_name": "receptor-like protein kinase 1", "gene_name": "RLK1", "gene_names_uniprotkb": "RLK1; MSL3.2", "gene_names_refseq": "RLK1; receptor-like protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39202", "url": "https://www.uniprot.org/uniprotkb/Q39202", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSIWFDKISDKTIVWHAQAV", "down_seq": "TTTGLVPNGSKVTLTADGGL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn92", "evidence": [ { "id": "Q39202", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39202#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q39202-1.100.100", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39221-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MQTYGVPIYAADWIPEVDVR", "down_seq": "KIIMDPEKSEDDDESSSSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser34" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AADWIPEVDVRSKIIMDPEK", "down_seq": "EDDDESSSSSSSSRSCIVLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser43" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVDVRSKIIMDPEKSEDDDE", "down_seq": "SSSSSSSRSCIVLSGGGGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDVRSKIIMDPEKSEDDDES", "down_seq": "SSSSSSRSCIVLSGGGGEGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser50" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVRSKIIMDPEKSEDDDESS", "down_seq": "SSSSSRSCIVLSGGGGEGRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRSKIIMDPEKSEDDDESSS", "down_seq": "SSSSRSCIVLSGGGGEGRSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSKIIMDPEKSEDDDESSSS", "down_seq": "SSSRSCIVLSGGGGEGRSGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKIIMDPEKSEDDDESSSSS", "down_seq": "SSRSCIVLSGGGGEGRSGIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q39221-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIIMDPEKSEDDDESSSSSS", "down_seq": "SRSCIVLSGGGGEGRSGISN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39221-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39221-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "Q39221-1", "length": 393, "uniprot_id": "STLP2_ARATH", "protein_name": "SEC12-like protein 2", "refseq_ac": "NP_178256", "refseq_name": "SEC12P-like 2 protein", "gene_name": "STL2P", "gene_names_uniprotkb": "STL2P; F2I9.9; ST12P", "gene_names_refseq": "ATSEC12; F2I9.9; F2I9_9; SEC12P-like 2 protein; STL2P", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q39221", "url": "https://www.uniprot.org/uniprotkb/Q39221" }, { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IIMDPEKSEDDDESSSSSSS", "down_seq": "RSCIVLSGGGGEGRSGISNV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39221", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39221" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q39221-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q39221-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q39221-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39221-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39221-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39221-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39221-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39221-1.55.55", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39222-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q39222-1", "length": 216, "uniprot_id": "RAA1B_ARATH", "protein_name": "Ras-related protein RABA1b", "refseq_ac": "NP_173136", "refseq_name": "RAB GTPase homolog A1B", "gene_name": "RABA1B", "gene_names_uniprotkb": "RABA1B; F6I1.7; RAB11", "gene_names_refseq": "ATRABA1B; BEX5; BFA-visualized exocytic trafficking defective 5; F17F16.26; RAB GTPase homolog A1B; RAB11; RABA1b", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39222", "url": "https://www.uniprot.org/uniprotkb/Q39222" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39222", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39222" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39222", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39222", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGKSNLLSRFTKNEFNLESK", "down_seq": "TIGVEFATRTLKVDGKVVKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39222", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39222" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39227-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "Q39227-1", "length": 361, "uniprot_id": "SMT2_ARATH", "protein_name": "24-methylenesterol C-methyltransferase 2", "refseq_ac": "NP_173458", "refseq_name": "sterol methyltransferase 2", "gene_name": "SMT2", "gene_names_uniprotkb": "SMT2; CVP1; F14O10.7", "gene_names_refseq": "COTYLEDON VASCULAR PATTERN 1; CVP1; F14O10.7; F14O10_7; FRILL1; FRL1; SMT2; sterol methyltransferase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39227", "url": "https://www.uniprot.org/uniprotkb/Q39227" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGIFSPMHMILCRKPESPEE", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser360" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q39227-1.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39227-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q39227-1", "length": 361, "uniprot_id": "SMT2_ARATH", "protein_name": "24-methylenesterol C-methyltransferase 2", "refseq_ac": "NP_173458", "refseq_name": "sterol methyltransferase 2", "gene_name": "SMT2", "gene_names_uniprotkb": "SMT2; CVP1; F14O10.7", "gene_names_refseq": "COTYLEDON VASCULAR PATTERN 1; CVP1; F14O10.7; F14O10_7; FRILL1; FRL1; SMT2; sterol methyltransferase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39227", "url": "https://www.uniprot.org/uniprotkb/Q39227" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIFSPMHMILCRKPESPEES", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser361" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q39227-1.360.360", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39227-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q39227-1", "length": 361, "uniprot_id": "SMT2_ARATH", "protein_name": "24-methylenesterol C-methyltransferase 2", "refseq_ac": "NP_173458", "refseq_name": "sterol methyltransferase 2", "gene_name": "SMT2", "gene_names_uniprotkb": "SMT2; CVP1; F14O10.7", "gene_names_refseq": "COTYLEDON VASCULAR PATTERN 1; CVP1; F14O10.7; F14O10_7; FRILL1; FRL1; SMT2; sterol methyltransferase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39227", "url": "https://www.uniprot.org/uniprotkb/Q39227" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LCVLGPAERKGKRAVDLSGG", "down_seq": "ISAEKVQDNYKQYWSFFRRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39227", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39227" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser41" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39230-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q39230-1", "length": 451, "uniprot_id": "SYSC_ARATH", "protein_name": "Serine--tRNA ligase, cytoplasmic", "refseq_ac": "", "refseq_name": "", "gene_name": "F21A20_180", "gene_names_uniprotkb": "F21A20_180", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39230", "url": "https://www.uniprot.org/uniprotkb/Q39230" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39230", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39230" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39230", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39230", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVDEIIKLDKEWRQRQFEVD", "down_seq": "FRKEFNKLNKQVAQLKIKKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39230", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39230" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39263-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "Q39263-1", "length": 260, "uniprot_id": "ZFP4_ARATH", "protein_name": "Zinc finger protein 4", "refseq_ac": "NP_176788", "refseq_name": "zinc finger protein 4", "gene_name": "ZFP4", "gene_names_uniprotkb": "ZFP4; F15E12.19", "gene_names_refseq": "F15E12.19; F15E12_19; ZFP4; zinc finger protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39263", "url": "https://www.uniprot.org/uniprotkb/Q39263" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39263", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39263" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q39263", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39263", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HGSGNGNMTSFRTLGIRAHS", "down_seq": "AHDVSMTRQTPETLIRNIAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39263", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39263" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser170" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E884-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "Q3E884-1", "length": 616, "uniprot_id": "LK110_ARATH", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.10", "refseq_ac": "NP_200839", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK110", "gene_names_uniprotkb": "LECRK110; F15L12.19", "gene_names_refseq": "F15L12.19; F15L12_19; L-type lectin receptor kinase I.10; LecRK-I.10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VVSPSMDFSHAESTRYLGIF", "down_seq": "VSKNGSPSSNVLAVELDTIW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn124", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E884-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "Q3E884-1", "length": 616, "uniprot_id": "LK110_ARATH", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.10", "refseq_ac": "NP_200839", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK110", "gene_names_uniprotkb": "LECRK110; F15L12.19", "gene_names_refseq": "F15L12.19; F15L12_19; L-type lectin receptor kinase I.10; LecRK-I.10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSPLSVGTASASYYSDIKGK", "down_seq": "ESINLLSGHPIQVWVDYEDN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn181", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E884-1.204.204", "start_pos": 204, "end_pos": 204, "uniprot_canonical_ac": "Q3E884-1", "length": 616, "uniprot_id": "LK110_ARATH", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.10", "refseq_ac": "NP_200839", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK110", "gene_names_uniprotkb": "LECRK110; F15L12.19", "gene_names_refseq": "F15L12.19; F15L12_19; L-type lectin receptor kinase I.10; LecRK-I.10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "INLLSGHPIQVWVDYEDNML", "down_seq": "VSMAPREVQKPSRPLLSQHI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn204", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E884-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q3E884-1", "length": 616, "uniprot_id": "LK110_ARATH", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.10", "refseq_ac": "NP_200839", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK110", "gene_names_uniprotkb": "LECRK110; F15L12.19", "gene_names_refseq": "F15L12.19; F15L12_19; L-type lectin receptor kinase I.10; LecRK-I.10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VSMAPREVQKPSRPLLSQHI", "down_seq": "LSDIYPNRRLFVGFSAATGT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn225", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E884-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "Q3E884-1", "length": 616, "uniprot_id": "LK110_ARATH", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.10", "refseq_ac": "NP_200839", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK110", "gene_names_uniprotkb": "LECRK110; F15L12.19", "gene_names_refseq": "F15L12.19; F15L12_19; L-type lectin receptor kinase I.10; LecRK-I.10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ENLYLDGSATVLPNGLLQLT", "down_seq": "ASDHQMAHVFYKDSIELSSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "Q3E884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E884#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8E5-1.336.336", "start_pos": 336, "end_pos": 336, "uniprot_canonical_ac": "Q3E8E5-1", "length": 439, "uniprot_id": "BGL39_ARATH", "protein_name": "Putative myrosinase 3", "refseq_ac": "NP_680406", "refseq_name": "thioglucoside glucosidase 3", "gene_name": "TGG3", "gene_names_uniprotkb": "TGG3; BGLU39; K23F3", "gene_names_refseq": "BETA GLUCOSIDASE 39; BGLU39; TGG3; thioglucoside glucosidase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8E5", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8E5", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YQTQYVYAIPANPPNRLTVL", "down_seq": "DSLSAFSYENKDGPIGPWFN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn336", "evidence": [ { "id": "Q3E8E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "245", "end_pos": "245" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8E5-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q3E8E5-1", "length": 439, "uniprot_id": "BGL39_ARATH", "protein_name": "Putative myrosinase 3", "refseq_ac": "NP_680406", "refseq_name": "thioglucoside glucosidase 3", "gene_name": "TGG3", "gene_names_uniprotkb": "TGG3; BGLU39; K23F3", "gene_names_refseq": "BETA GLUCOSIDASE 39; BGLU39; TGG3; thioglucoside glucosidase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8E5", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8E5", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVETCKAEEITCEETKPFTC", "down_seq": "QTDRFNRKHFDDDFIFEGGK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn33", "evidence": [ { "id": "Q3E8E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "245", "end_pos": "245" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8E5-1.245.245", "start_pos": 245, "end_pos": 245, "uniprot_canonical_ac": "Q3E8E5-1", "length": 439, "uniprot_id": "BGL39_ARATH", "protein_name": "Putative myrosinase 3", "refseq_ac": "NP_680406", "refseq_name": "thioglucoside glucosidase 3", "gene_name": "TGG3", "gene_names_uniprotkb": "TGG3; BGLU39; K23F3", "gene_names_refseq": "BETA GLUCOSIDASE 39; BGLU39; TGG3; thioglucoside glucosidase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8E5", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8E5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E8E5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HLYRKKYKPKQRGQIGVVMI", "down_seq": "RWFVPYDSTQANIDATERNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3E8E5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E8E5" } ], "site_lbl": "Thr245" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "245", "end_pos": "245" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DGSGQYKTINEALNFVPKKK", "down_seq": "TTFVVHIKEGIYKEYVQVNR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn278", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q3E8Z8-1.297.297", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.297.297", "start_pos": 297, "end_pos": 297, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KNTTFVVHIKEGIYKEYVQV", "down_seq": "RSMTHLVFIGDGPDKTVISG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn297", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q3E8Z8-1.278.278", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KRYVIISISSVLLISMVVAV", "down_seq": "IGVSVNKSDNAGDEEITTSV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q3E8Z8-1.40.40", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SISSVLLISMVVAVTIGVSV", "down_seq": "KSDNAGDEEITTSVKAIKDV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn40", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q3E8Z8-1.34.34", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DCTISGTIDFLFGDAAAVFQ", "down_seq": "CTLLVRKPLLNQACPITAHG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn413", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.566.566", "start_pos": 566, "end_pos": 566, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QGDAWIPGKGVPYILGLFSG", "down_seq": "GSTNSTVTGSSLSSNTTESS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn566", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q3E8Z8-1.570.570", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q3E8Z8-1.581.581", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.570.570", "start_pos": 570, "end_pos": 570, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WIPGKGVPYILGLFSGNGST", "down_seq": "STVTGSSLSSNTTESSDSPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn570", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q3E8Z8-1.566.566", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q3E8Z8-1.581.581", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.581.581", "start_pos": 581, "end_pos": 581, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLFSGNGSTNSTVTGSSLSS", "down_seq": "TTESSDSPSTVVTPSTSPPA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn581", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q3E8Z8-1.566.566", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q3E8Z8-1.570.570", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.632.632", "start_pos": 632, "end_pos": 632, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSVVSPSTSLPAGQLGAPPA", "down_seq": "PSMVVSPSTSPPAGHLGSPS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr632", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.682.682", "start_pos": 682, "end_pos": 682, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "STSPPAGHLGSPSDTPSSVV", "down_seq": "PSASPSTSPSASPSVSPSAF", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr682", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E8Z8-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "Q3E8Z8-1", "length": 732, "uniprot_id": "PME28_ARATH", "protein_name": "Putative pectinesterase/pectinesterase inhibitor 28", "refseq_ac": "NP_198139", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME28", "gene_names_uniprotkb": "PME28; ARATH28; F14I23.30", "gene_names_refseq": "F14I23.30; F14I23_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E8Z8", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TLRKDAKDTSDPLELVKTAF", "down_seq": "ATMKQISDVAKKSQTMIELQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "Q3E8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E8Z8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "570", "end_pos": "570" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AIDWSSGDSLCLVRYSNHLI", "down_seq": "GSLDEDIIWAEYIEYKYNTS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q3E9X6-1.148.148", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LINGSLDEDIIWAEYIEYKY", "down_seq": "TSFGQTNLTEFKSTWQALMD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn148", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q3E9X6-1.130.130", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q3E9X6-1.155.155", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EDIIWAEYIEYKYNTSFGQT", "down_seq": "LTEFKSTWQALMDRVINKVD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn155", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q3E9X6-1.148.148", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CNKDLTKLNCEKCLQHLRID", "down_seq": "RSCCRGIQVGYIARTSCFMR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn220", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CFMRWDLQPFLGLFINGMLP", "down_seq": "PPSELDNGHSNTTKKDGKNI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr257", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q3E9X6-1.268.268", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q3E9X6-1.276.276", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.268.268", "start_pos": 268, "end_pos": 268, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLFINGMLPTPPSELDNGHS", "down_seq": "TTKKDGKNISTGSIVAIAVV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn268", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q3E9X6-1.257.257", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q3E9X6-1.276.276", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PTPPSELDNGHSNTTKKDGK", "down_seq": "ISTGSIVAIAVVSVVVSTVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn276", "evidence": [ { "id": "Q3E9X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q3E9X6-1.257.257", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q3E9X6-1.268.268", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q3E9X6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E9X6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q3E9X6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E9X6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSTVLLALGYAVSRRRKAYQ", "down_seq": "FASENGYFSVSRRPRRPYGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3E9X6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E9X6" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser312" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q3E9X6-1.319.319", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E9X6-1.319.319", "start_pos": 319, "end_pos": 319, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q3E9X6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E9X6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q3E9X6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E9X6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LGYAVSRRRKAYQSFASENG", "down_seq": "FSVSRRPRRPYGTASPDDAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3E9X6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E9X6" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr319" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q3E9X6-1.312.312", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E9X6-1.436.436", "start_pos": 436, "end_pos": 436, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HKNLVGLLGFSVEGEEKILV", "down_seq": "EFVPNKSLDHFLFDPIKRVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "site_lbl": "Tyr436" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.492.492", "start_pos": 492, "end_pos": 492, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GILYLHQDSRLTIIHRDLKA", "down_seq": "NILLDAEMNPKIADFGLARN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "site_lbl": "Ser492" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.528.528", "start_pos": 528, "end_pos": 528, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLARNFRVNQTEANTGRVVG", "down_seq": "FGYMPPEYVANGQFSTKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "site_lbl": "Thr528" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q3E9X6-1.536.536", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E9X6-1.536.536", "start_pos": 536, "end_pos": 536, "uniprot_canonical_ac": "Q3E9X6-1", "length": 690, "uniprot_id": "CRK21_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 21", "refseq_ac": "NP_194060", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "gene_name": "CRK21", "gene_names_uniprotkb": "CRK21; F21P8.180", "gene_names_refseq": "CRK21; F21P8.180; F21P8_180; cysteine-rich RLK (RECEPTOR-like protein kinase) 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NQTEANTGRVVGTFGYMPPE", "down_seq": "VANGQFSTKSDVYSFGVLIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q3E9X6", "url": "https://www.uniprot.org/uniprotkb/Q3E9X6" } ], "site_lbl": "Tyr536" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q3E9X6-1.528.528", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3EAI1-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "Q3EAI1-1", "length": 426, "uniprot_id": "BH060_ARATH", "protein_name": "Transcription factor bHLH60", "refseq_ac": "NP_567057", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH60", "gene_names_uniprotkb": "BHLH60; EN91; F15B8.10; T10K17.10", "gene_names_refseq": "AT3G57795", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EAI1", "url": "https://www.uniprot.org/uniprotkb/Q3EAI1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ARFSVIATEQQNGNISGETP", "down_seq": "SSVPSNSSANLDRVKTEPAE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr127", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3EAY9-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q3EAY9-1", "length": 497, "uniprot_id": "PME30_ARATH", "protein_name": "Probable pectinesterase 30", "refseq_ac": "NP_189437", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME30", "gene_names_uniprotkb": "PME30; ARATH30; K24A2.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VIYIKTGIYDEIVVIENTKP", "down_seq": "LTLIGDGQDLTIITGNLSAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn238", "evidence": [ { "id": "Q3EAY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "385", "end_pos": "385" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q3EAY9-1.226.226", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q3EAY9-1.240.240", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q3EAY9-1.254.254", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3EAY9-1.254.254", "start_pos": 254, "end_pos": 254, "uniprot_canonical_ac": "Q3EAY9-1", "length": 497, "uniprot_id": "PME30_ARATH", "protein_name": "Probable pectinesterase 30", "refseq_ac": "NP_189437", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME30", "gene_names_uniprotkb": "PME30; ARATH30; K24A2.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTKPNLTLIGDGQDLTIITG", "down_seq": "LSASNVRRTYNTATVASNGN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn254", "evidence": [ { "id": "Q3EAY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "385", "end_pos": "385" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q3EAY9-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q3EAY9-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3EAY9-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "Q3EAY9-1", "length": 497, "uniprot_id": "PME30_ARATH", "protein_name": "Probable pectinesterase 30", "refseq_ac": "NP_189437", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME30", "gene_names_uniprotkb": "PME30; ARATH30; K24A2.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ITAQSRATKDVKSGFSIQNC", "down_seq": "ITTSSDLDTATVKTYLGRPW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn385", "evidence": [ { "id": "Q3EAY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "385", "end_pos": "385" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3EAY9-1.226.226", "start_pos": 226, "end_pos": 226, "uniprot_canonical_ac": "Q3EAY9-1", "length": 497, "uniprot_id": "PME30_ARATH", "protein_name": "Probable pectinesterase 30", "refseq_ac": "NP_189437", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME30", "gene_names_uniprotkb": "PME30; ARATH30; K24A2.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q3EAY9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3EAY9" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q3EAY9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3EAY9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "IAAAPQHSQKRFVIYIKTGI", "down_seq": "DEIVVIENTKPNLTLIGDGQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3EAY9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3EAY9" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Tyr226" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "385", "end_pos": "385" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q3EAY9-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q3EAY9-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3EAY9-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q3EAY9-1", "length": 497, "uniprot_id": "PME30_ARATH", "protein_name": "Probable pectinesterase 30", "refseq_ac": "NP_189437", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME30", "gene_names_uniprotkb": "PME30; ARATH30; K24A2.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3EAY9", "url": "https://www.uniprot.org/uniprotkb/Q3EAY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q3EAY9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3EAY9" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q3EAY9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3EAY9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YIKTGIYDEIVVIENTKPNL", "down_seq": "LIGDGQDLTIITGNLSASNV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3EAY9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3EAY9" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr240" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "238", "end_pos": "238" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "385", "end_pos": "385" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q3EAY9-1.226.226", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q3EAY9-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q3EAY9-1.254.254", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3ECH2-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTLTLARSDLLGSFCSSYAY", "down_seq": "TTTLPPEIFELSPTYKSLTV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CQNSFTVNVPTSFHPEERGL", "down_seq": "LTNLESALRKGFEVKLVIDE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn186", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVIDEIPCQQCSSTRGICSF", "down_seq": "GTTQSCCNATSPSGGVSCVP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn222", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q3ECH2-1.230.230", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QQCSSTRGICSFNGTTQSCC", "down_seq": "ATSPSGGVSCVPYQHSADEV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn230", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q3ECH2-1.222.222", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LNYPLWKPGREECGHPNFKL", "down_seq": "CSGGFAEINIASVKFRILDS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn286", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PVLELTGETELLTLYYGCRF", "down_seq": "SSDIPANIYVGELGCDEGRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn358", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.384.384", "start_pos": 384, "end_pos": 384, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ANIYVGELGCDEGRSYYVTR", "down_seq": "LSSPLLDSSRGVLNNLREMC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn384", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SPLLDSSRGVLNNLREMCKR", "down_seq": "VSVPASGPALFDLQTRPNQD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn407", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LPCASSNQGLGWCESLFQCG", "down_seq": "ITADFPFWGGNRHKPCGHPL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn42", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.458.458", "start_pos": 458, "end_pos": 458, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RMLITSDCERCRGSGGACGY", "down_seq": "QTSSGFGCYCKDGKCGYEYD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn458", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GGNRHKPCGHPLLELHCNNN", "down_seq": "ITSLYISNQEFYVRQINQTS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn71", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q3ECH2-1.88.88", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NNNNITSLYISNQEFYVRQI", "down_seq": "QTSNTLTLARSDLLGSFCSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn88", "evidence": [ { "id": "Q3ECH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q3ECH2-1.71.71", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.547.547", "start_pos": 547, "end_pos": 547, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KTSDEVRLQKLKALIPLKHY", "down_seq": "YAEVKKMTKSFTEVVGRGGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "site_lbl": "Thr547" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.629.629", "start_pos": 629, "end_pos": 629, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HVNIVSLLGFCCEGSRRAII", "down_seq": "EFLGNGSLDKFISDKSSVNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "site_lbl": "Tyr629" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.653.653", "start_pos": 653, "end_pos": 653, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q3ECH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ECH2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q3ECH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ECH2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GNGSLDKFISDKSSVNLDLK", "down_seq": "LYGIALGVARGLEYLHYGCK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3ECH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ECH2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr653" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q3ECH2-1.655.655", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3ECH2-1.655.655", "start_pos": 655, "end_pos": 655, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q3ECH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ECH2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q3ECH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ECH2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GSLDKFISDKSSVNLDLKTL", "down_seq": "GIALGVARGLEYLHYGCKTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3ECH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ECH2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr655" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q3ECH2-1.653.653", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3ECH2-1.717.717", "start_pos": 717, "end_pos": 717, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SDFGLAKLCEKKESILSLLD", "down_seq": "RGTIGYIAPEMISRLYGSVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "site_lbl": "Thr717" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q3ECH2-1.720.720", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ECH2-1.720.720", "start_pos": 720, "end_pos": 720, "uniprot_canonical_ac": "Q3ECH2-1", "length": 892, "uniprot_id": "LRL28_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "refseq_ac": "NP_176871", "refseq_name": "Protein kinase superfamily protein", "gene_name": "LRK10L-2.8", "gene_names_uniprotkb": "LRK10L-2.8; F1O19.18", "gene_names_refseq": "F1O19.18; F1O19_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKLCEKKESILSLLDTRG", "down_seq": "IGYIAPEMISRLYGSVSHKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "site_lbl": "Thr720" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "547", "end_pos": "547" }, { "start_pos": "629", "end_pos": "629" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "720", "end_pos": "720" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q3ECH2-1.717.717", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3ED65-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q3ED65-1", "length": 261, "uniprot_id": "MENG_ARATH", "protein_name": "2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic", "refseq_ac": "NP_173750", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "MENG", "gene_names_uniprotkb": "MENG; F26F24.24", "gene_names_refseq": "F26F24.24; F26F24_24; MENG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ED65", "url": "https://www.uniprot.org/uniprotkb/Q3ED65" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q3ED65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ED65" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q3ED65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ED65", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAALLGIVSPV", "down_seq": "FTGKHPVNSRSRRRTVVKCS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3ED65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ED65" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "21", "end_pos": "21" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q3ED65-1.21.21", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3ED65-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "Q3ED65-1", "length": 261, "uniprot_id": "MENG_ARATH", "protein_name": "2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic", "refseq_ac": "NP_173750", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "MENG", "gene_names_uniprotkb": "MENG; F26F24.24", "gene_names_refseq": "F26F24.24; F26F24_24; MENG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ED65", "url": "https://www.uniprot.org/uniprotkb/Q3ED65" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q3ED65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ED65" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q3ED65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ED65", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAALLGIVSPVTFTGKHPVN", "down_seq": "RSRRRTVVKCSNERRILFNR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q3ED65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3ED65" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "21", "end_pos": "21" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q3ED65-1.12.12", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q41932-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" }, { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PGTDNSDQARDFSLALKDRF", "down_seq": "IQPLSPTEAAARAKDSAKEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr120" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q41932-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q41932-1.127.127", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q41932-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" }, { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomics of Arabidopsis chloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16.", "journal": "FEBS letters", "date": "2012-05-07", "authors": "Ingelsson Bj\u00f6rn, Vener Alexander V", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "22616989", "url": "https://glygen.org/publication/PubMed/22616989" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q41932", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q41932*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22616989", "url": "https://glygen.org/publication/PubMed/22616989", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDQARDFSLALKDRFYIQPL", "down_seq": "PTEAAARAKDSAKEIINVKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "IntAct", "id": "Q41932", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q41932*" }, { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" }, { "database": "PubMed", "id": "22616989", "url": "https://glygen.org/publication/PubMed/22616989" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser125" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q41932-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q41932-1.127.127", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q41932-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" }, { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QARDFSLALKDRFYIQPLSP", "down_seq": "EAAARAKDSAKEIINVKSFI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr127" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q41932-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q41932-1.125.125", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q41932-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SAKPKEEKQSLKDLTAKLFQ", "down_seq": "IDNLDYAARSKSSPDAEKYY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "site_lbl": "Thr195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q41932-1.215.215", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q41932-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TIDNLDYAARSKSSPDAEKY", "down_seq": "SETVSSLNNVLAKLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "site_lbl": "Tyr215" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q41932-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q41932-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q41932-1.218.218", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q41932-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" }, { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IDNLDYAARSKSSPDAEKYY", "down_seq": "ETVSSLNNVLAKLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "Q41932", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q41932" } ], "site_lbl": "Ser216" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q41932-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q41932-1.218.218", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q41932-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q41932-1", "length": 230, "uniprot_id": "PSBQ2_ARATH", "protein_name": "Oxygen-evolving enhancer protein 3-2, chloroplastic", "refseq_ac": "NP_001319873", "refseq_name": "photosystem II subunit Q-2", "gene_name": "PSBQ2", "gene_names_uniprotkb": "PSBQ2; C17L7.100; PSBQB", "gene_names_refseq": "C17L7.100; C17L7_100; OEC16; OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA; PHOTOSYSTEM II SUBUNIT Q; PSBQ-2; PSBQ; PSII-Q; photosystem II subunit Q-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NLDYAARSKSSPDAEKYYSE", "down_seq": "VSSLNNVLAKLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q41932", "url": "https://www.uniprot.org/uniprotkb/Q41932" } ], "site_lbl": "Thr218" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q41932-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q41932-1.216.216", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q41975-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "Q41975-1", "length": 250, "uniprot_id": "TIP22_ARATH", "protein_name": "Probable aquaporin TIP2-2", "refseq_ac": "NP_193465", "refseq_name": "tonoplast intrinsic protein 2;2", "gene_name": "TIP2-2", "gene_names_uniprotkb": "TIP2-2; FCAALL.412; dl4705w", "gene_names_refseq": "2; DELTA-TIP2; DL4705W; FCAALL.412; TIP2; tonoplast intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q41975", "url": "https://www.uniprot.org/uniprotkb/Q41975" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q41975", "url": "https://www.uniprot.org/uniprotkb/Q41975", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGLIYGDVFIGSYAPAPTTE", "down_seq": "YP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q41975", "url": "https://www.uniprot.org/uniprotkb/Q41975" } ], "site_lbl": "Ser248" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42191-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q42191-1", "length": 429, "uniprot_id": "OXA1_ARATH", "protein_name": "Mitochondrial inner membrane protein OXA1", "refseq_ac": "NP_201011", "refseq_name": "inner membrane OXA1-like protein", "gene_name": "OXA1", "gene_names_uniprotkb": "OXA1; ATOXA1; MTG10.19", "gene_names_refseq": "ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 (OXA1); ATOXA1; HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 (OXA1) IN ARABIDOPSIS THALIANA; MTG10.19; MTG10_19; OXA1AT; OXA1; homolog of yeast oxidase assembly 1 (OXA1)", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42191", "url": "https://www.uniprot.org/uniprotkb/Q42191" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q42191", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42191" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q42191", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42191", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NPRLSSTSLSPVSKRLKALE", "down_seq": "QVKGRKKNSSKKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42191", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42191" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser416" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42347-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "Q42347-1", "length": 164, "uniprot_id": "RL241_ARATH", "protein_name": "Large ribosomal subunit protein eL24z", "refseq_ac": "NP_565851", "refseq_name": "ribosomal protein L24", "gene_name": "RPL24A", "gene_names_uniprotkb": "RPL24A; F13K3.2; F1O11.25", "gene_names_refseq": "F13K3.2; F13K3_2; RPL24A; ribosomal protein L24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42347", "url": "https://www.uniprot.org/uniprotkb/Q42347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELCRFSGQKIYPGRGIRFIR", "down_seq": "DSQVFLFLNSKCKRYFHNKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q42347-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42347-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "Q42347-1", "length": 164, "uniprot_id": "RL241_ARATH", "protein_name": "Large ribosomal subunit protein eL24z", "refseq_ac": "NP_565851", "refseq_name": "ribosomal protein L24", "gene_name": "RPL24A", "gene_names_uniprotkb": "RPL24A; F13K3.2; F1O11.25", "gene_names_refseq": "F13K3.2; F13K3_2; RPL24A; ribosomal protein L24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42347", "url": "https://www.uniprot.org/uniprotkb/Q42347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CRFSGQKIYPGRGIRFIRSD", "down_seq": "QVFLFLNSKCKRYFHNKLKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q42347-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42347-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "Q42347-1", "length": 164, "uniprot_id": "RL241_ARATH", "protein_name": "Large ribosomal subunit protein eL24z", "refseq_ac": "NP_565851", "refseq_name": "ribosomal protein L24", "gene_name": "RPL24A", "gene_names_uniprotkb": "RPL24A; F13K3.2; F1O11.25", "gene_names_refseq": "F13K3.2; F13K3_2; RPL24A; ribosomal protein L24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42347", "url": "https://www.uniprot.org/uniprotkb/Q42347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DAAQEAVKRRRRATKKPYSR", "down_seq": "IVGATLEVIQKKRAEKPEVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42347", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42347" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42534-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q42534-1", "length": 587, "uniprot_id": "PME2_ARATH", "protein_name": "Pectinesterase 2", "refseq_ac": "NP_175786", "refseq_name": "pectin methylesterase 2", "gene_name": "PME2", "gene_names_uniprotkb": "PME2; ARATH8; T18A20.6", "gene_names_refseq": "ATPME2; PME2; T18A20.6; T18A20_6; pectin methylesterase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LLKGQVHVEHMCSNALAMIK", "down_seq": "MTETDIANFELRDKSSTFTN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn218", "evidence": [ { "id": "Q42534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42534#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42534-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "Q42534-1", "length": 587, "uniprot_id": "PME2_ARATH", "protein_name": "Pectinesterase 2", "refseq_ac": "NP_175786", "refseq_name": "pectin methylesterase 2", "gene_name": "PME2", "gene_names_uniprotkb": "PME2; ARATH8; T18A20.6", "gene_names_refseq": "ATPME2; PME2; T18A20.6; T18A20_6; pectin methylesterase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VAATGGKELTSQKEVIEASL", "down_seq": "LTTKAVKHNYFAVKKLIAKR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "Q42534", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42534#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42534-1.374.374", "start_pos": 374, "end_pos": 374, "uniprot_canonical_ac": "Q42534-1", "length": 587, "uniprot_id": "PME2_ARATH", "protein_name": "Pectinesterase 2", "refseq_ac": "NP_175786", "refseq_name": "pectin methylesterase 2", "gene_name": "PME2", "gene_names_uniprotkb": "PME2; ARATH8; T18A20.6", "gene_names_refseq": "ATPME2; PME2; T18A20.6; T18A20_6; pectin methylesterase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q42534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42534" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q42534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42534", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SATVAAVGERFLARDITFQN", "down_seq": "AGPSKHQAVALRVGSDFSAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42534" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr374" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q42534-1.378.378", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42534-1.378.378", "start_pos": 378, "end_pos": 378, "uniprot_canonical_ac": "Q42534-1", "length": 587, "uniprot_id": "PME2_ARATH", "protein_name": "Pectinesterase 2", "refseq_ac": "NP_175786", "refseq_name": "pectin methylesterase 2", "gene_name": "PME2", "gene_names_uniprotkb": "PME2; ARATH8; T18A20.6", "gene_names_refseq": "ATPME2; PME2; T18A20.6; T18A20_6; pectin methylesterase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q42534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42534" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q42534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42534", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAVGERFLARDITFQNTAGP", "down_seq": "KHQAVALRVGSDFSAFYQCD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42534" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser378" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q42534-1.374.374", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42538-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q42538-1", "length": 312, "uniprot_id": "SAT5_ARATH", "protein_name": "Serine acetyltransferase 5", "refseq_ac": "NP_200487", "refseq_name": "serine acetyltransferase 1;1", "gene_name": "SAT5", "gene_names_uniprotkb": "SAT5; MIK19.23; SAT52", "gene_names_refseq": "1; ATSERAT1; MIK19.23; MIK19_23; SAT-52; SAT5; SERAT1; SERINE ACETYLTRANSFERASE 52; SERINE ACETYLTRANSFERASE 5; SERINE ACETYLTRANSFERASE; serine acetyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42538", "url": "https://www.uniprot.org/uniprotkb/Q42538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPPAGELRHQ", "down_seq": "PSKEKLSSVTQSDEAEAASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42538-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q42538-1", "length": 312, "uniprot_id": "SAT5_ARATH", "protein_name": "Serine acetyltransferase 5", "refseq_ac": "NP_200487", "refseq_name": "serine acetyltransferase 1;1", "gene_name": "SAT5", "gene_names_uniprotkb": "SAT5; MIK19.23; SAT52", "gene_names_refseq": "1; ATSERAT1; MIK19.23; MIK19_23; SAT-52; SAT5; SERAT1; SERINE ACETYLTRANSFERASE 52; SERINE ACETYLTRANSFERASE 5; SERINE ACETYLTRANSFERASE; serine acetyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42538", "url": "https://www.uniprot.org/uniprotkb/Q42538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALASYLYSTILSHSSLERSI", "down_seq": "FHLGNKLCSSTLLSTLLYDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42538", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42538" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser82" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42577-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q42577-1", "length": 218, "uniprot_id": "NDUS7_ARATH", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "T22P22_160", "gene_names_uniprotkb": "T22P22_160", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42577", "url": "https://www.uniprot.org/uniprotkb/Q42577" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q42577", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42577" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q42577", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42577", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RFGIIFRPSPRQSDCMIVAG", "down_seq": "LTNKMAPALRKVYDQMPEPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42577", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42577" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr130" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q42577-1.132.132", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42577-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q42577-1", "length": 218, "uniprot_id": "NDUS7_ARATH", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "T22P22_160", "gene_names_uniprotkb": "T22P22_160", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42577", "url": "https://www.uniprot.org/uniprotkb/Q42577" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q42577", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42577" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q42577", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42577", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GIIFRPSPRQSDCMIVAGTL", "down_seq": "NKMAPALRKVYDQMPEPRWV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42577", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42577" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr132" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q42577-1.130.130", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42589-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "Q42589-1", "length": 118, "uniprot_id": "NLTP1_ARATH", "protein_name": "Non-specific lipid-transfer protein 1", "refseq_ac": "", "refseq_name": "", "gene_name": "LTP1", "gene_names_uniprotkb": "LTP1; T6A23.26", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42589", "url": "https://www.uniprot.org/uniprotkb/Q42589" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q42589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42589" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q42589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42589", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTPDRQQACNCIQGAARALG", "down_seq": "GLNAGRAAGIPKACGVNIPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42589" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser86" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q43314-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q43314-1", "length": 411, "uniprot_id": "DHE1_ARATH", "protein_name": "Glutamate dehydrogenase 1", "refseq_ac": "NP_197318", "refseq_name": "glutamate dehydrogenase 1", "gene_name": "GDH1", "gene_names_uniprotkb": "GDH1; MRG7.13", "gene_names_refseq": "GDH1; GLUTAMATE DECARBOXYLASE 1; GLUTAMATE DEHYDROGENASE 1; MRG7.13; MRG7_13; glutamate dehydrogenase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43314", "url": "https://www.uniprot.org/uniprotkb/Q43314" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q43314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43314" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q43314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43314", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SWAAKLISEKGGKIVAVSDI", "down_seq": "GAIKNKDGIDIPALLKHTKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q43314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43314" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q43870-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q43870-1", "length": 476, "uniprot_id": "APS2_ARATH", "protein_name": "ATP sulfurylase 2", "refseq_ac": "NP_564099", "refseq_name": "Pseudouridine synthase/archaeosine transglycosylase-like family protein", "gene_name": "APS2", "gene_names_uniprotkb": "APS2; ASA1; F6F9.2; MET3-1", "gene_names_refseq": "APS2; ASA1; ATP SULFURYLASE ARABIDOPSIS 1; ATP SULFURYLASE PRECURSOR; F6F9.2; F6F9_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43870", "url": "https://www.uniprot.org/uniprotkb/Q43870" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RIARTWGTTSPGLPYVEEYI", "down_seq": "PSGNWLIGGDLEVFEPIKYN", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q43873-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q43873-1", "length": 329, "uniprot_id": "PER73_ARATH", "protein_name": "Peroxidase 73", "refseq_ac": "NP_201541", "refseq_name": "root hair specific 19", "gene_name": "PER73", "gene_names_uniprotkb": "PER73; K8K14.13; P73", "gene_names_refseq": "K8K14.13; K8K14_13; RHS19; root hair specific 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43873", "url": "https://www.uniprot.org/uniprotkb/Q43873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q43873", "url": "https://www.uniprot.org/uniprotkb/Q43873", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AAHTLGFAHCGKVFNRIYNF", "down_seq": "LTHAVDPTLNKAYAKELQLA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn215", "evidence": [ { "id": "Q43873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q43873#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "215", "end_pos": "215" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q43873-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "Q43873-1", "length": 329, "uniprot_id": "PER73_ARATH", "protein_name": "Peroxidase 73", "refseq_ac": "NP_201541", "refseq_name": "root hair specific 19", "gene_name": "PER73", "gene_names_uniprotkb": "PER73; K8K14.13; P73", "gene_names_refseq": "K8K14.13; K8K14_13; RHS19; root hair specific 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43873", "url": "https://www.uniprot.org/uniprotkb/Q43873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q43873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43873" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q43873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VDPRIAINMDPTTPRQFDNI", "down_seq": "FKNLQQGKGLFTSDQVLFTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q43873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q43873" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Tyr260" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "215", "end_pos": "215" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "260", "end_pos": "260" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q45GQ7-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q45GQ7-1", "length": 349, "uniprot_id": "POHS1_ARATH", "protein_name": "Protein POOR HOMOLOGOUS SYNAPSIS 1", "refseq_ac": "NP_001077508", "refseq_name": "poor homologous synapsis 1", "gene_name": "PHS1", "gene_names_uniprotkb": "PHS1; T16B5.15", "gene_names_refseq": "PHS1; POOR HOMOLOGOUS SYNAPSIS 1; T16B5.15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-11-24", "authors": "Ronceret Arnaud, Doutriaux Marie-Pascale, Golubovskaya Inna N, Pawlowski Wojciech P", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "reference": [ { "type": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "crossref": [ { "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "KEKIKGLKEASTQNQKNKTR", "down_seq": "DVSFQSDYNPSDAIIPRATQ", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "Y", "comment": "No effect on meiosis.", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" }, { "database": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "235", "end_pos": "235" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q45GQ7-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "Q45GQ7-1", "length": 349, "uniprot_id": "POHS1_ARATH", "protein_name": "Protein POOR HOMOLOGOUS SYNAPSIS 1", "refseq_ac": "NP_001077508", "refseq_name": "poor homologous synapsis 1", "gene_name": "PHS1", "gene_names_uniprotkb": "PHS1; T16B5.15", "gene_names_refseq": "PHS1; POOR HOMOLOGOUS SYNAPSIS 1; T16B5.15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-11-24", "authors": "Ronceret Arnaud, Doutriaux Marie-Pascale, Golubovskaya Inna N, Pawlowski Wojciech P", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "reference": [ { "type": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "crossref": [ { "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "DYNPSDAIIPRATQKEPNMV", "down_seq": "PLNSYVPEMLPRIVYEAQYQ", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "K", "comment": "No effect on meiosis.", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" }, { "database": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "235", "end_pos": "235" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q45GQ7-1.203.203", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q45GQ7-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q45GQ7-1", "length": 349, "uniprot_id": "POHS1_ARATH", "protein_name": "Protein POOR HOMOLOGOUS SYNAPSIS 1", "refseq_ac": "NP_001077508", "refseq_name": "poor homologous synapsis 1", "gene_name": "PHS1", "gene_names_uniprotkb": "PHS1; T16B5.15", "gene_names_refseq": "PHS1; POOR HOMOLOGOUS SYNAPSIS 1; T16B5.15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-11-24", "authors": "Ronceret Arnaud, Doutriaux Marie-Pascale, Golubovskaya Inna N, Pawlowski Wojciech P", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "reference": [ { "type": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "crossref": [ { "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDAIIPRATQKEPNMVRPLN", "down_seq": "YVPEMLPRIVYEAQYQKSET", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "No effect on meiosis.", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" }, { "database": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "235", "end_pos": "235" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q45GQ7-1.199.199", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q45GQ7-1.223.223", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q45GQ7-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q45GQ7-1", "length": 349, "uniprot_id": "POHS1_ARATH", "protein_name": "Protein POOR HOMOLOGOUS SYNAPSIS 1", "refseq_ac": "NP_001077508", "refseq_name": "poor homologous synapsis 1", "gene_name": "PHS1", "gene_names_uniprotkb": "PHS1; T16B5.15", "gene_names_refseq": "PHS1; POOR HOMOLOGOUS SYNAPSIS 1; T16B5.15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-11-24", "authors": "Ronceret Arnaud, Doutriaux Marie-Pascale, Golubovskaya Inna N, Pawlowski Wojciech P", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "reference": [ { "type": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "crossref": [ { "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SYVPEMLPRIVYEAQYQKSE", "down_seq": "RSEVSFQSDYNPSIEIFPRA", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "No effect on meiosis.", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" }, { "database": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "235", "end_pos": "235" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q45GQ7-1.203.203", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q45GQ7-1.235.235", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q45GQ7-1.235.235", "start_pos": 235, "end_pos": 235, "uniprot_canonical_ac": "Q45GQ7-1", "length": 349, "uniprot_id": "POHS1_ARATH", "protein_name": "Protein POOR HOMOLOGOUS SYNAPSIS 1", "refseq_ac": "NP_001077508", "refseq_name": "poor homologous synapsis 1", "gene_name": "PHS1", "gene_names_uniprotkb": "PHS1; T16B5.15", "gene_names_refseq": "PHS1; POOR HOMOLOGOUS SYNAPSIS 1; T16B5.15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-11-24", "authors": "Ronceret Arnaud, Doutriaux Marie-Pascale, Golubovskaya Inna N, Pawlowski Wojciech P", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" } ], "reference": [ { "type": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "crossref": [ { "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "EAQYQKSETRSEVSFQSDYN", "down_seq": "SIEIFPRATEEEPNMVRFFD", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "No effect on meiosis.", "evidence": [ { "database": "UniProtKB", "id": "Q45GQ7", "url": "https://www.uniprot.org/uniprotkb/Q45GQ7" }, { "database": "PubMed", "id": "19918061", "url": "https://glygen.org/publication/PubMed/19918061" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "235", "end_pos": "235" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q45GQ7-1.223.223", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q494P0-1.520.520", "start_pos": 520, "end_pos": 520, "uniprot_canonical_ac": "Q494P0-1", "length": 535, "uniprot_id": "PHT17_ARATH", "protein_name": "Probable inorganic phosphate transporter 1-7", "refseq_ac": "", "refseq_name": "", "gene_name": "PHT1-7", "gene_names_uniprotkb": "PHT1-7; T5N23.60", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q494P0", "url": "https://www.uniprot.org/uniprotkb/Q494P0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q494P0", "url": "https://www.uniprot.org/uniprotkb/Q494P0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PESKGKSLEEMSGENEQNDE", "down_seq": "SSSSNNNSNNAVSTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q494P0", "url": "https://www.uniprot.org/uniprotkb/Q494P0" } ], "site_lbl": "Ser520" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4FE47-1.167.167", "start_pos": 167, "end_pos": 167, "uniprot_canonical_ac": "Q4FE47-1", "length": 462, "uniprot_id": "XB35_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase XBAT35", "refseq_ac": "NP_566724", "refseq_name": "uncharacterized protein", "gene_name": "XBAT35", "gene_names_uniprotkb": "XBAT35; K14B15.19", "gene_names_refseq": "XB3 ortholog 5 in Arabidopsis thaliana; XBAT35", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4FE47", "url": "https://www.uniprot.org/uniprotkb/Q4FE47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q4FE47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4FE47" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q4FE47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4FE47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FLDLFAPQLLSRRVWVVIVP", "down_seq": "GSRNPTKPFKLELVVYASLQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4FE47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4FE47" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr167" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q4FE47-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4FE47-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "Q4FE47-1", "length": 462, "uniprot_id": "XB35_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase XBAT35", "refseq_ac": "NP_566724", "refseq_name": "uncharacterized protein", "gene_name": "XBAT35", "gene_names_uniprotkb": "XBAT35; K14B15.19", "gene_names_refseq": "XB3 ortholog 5 in Arabidopsis thaliana; XBAT35", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4FE47", "url": "https://www.uniprot.org/uniprotkb/Q4FE47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q4FE47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4FE47" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q4FE47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4FE47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLFAPQLLSRRVWVVIVPTG", "down_seq": "RNPTKPFKLELVVYASLQDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4FE47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4FE47" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q4FE47-1.167.167", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4JL84-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q4JL84-1", "length": 235, "uniprot_id": "MYB59_ARATH", "protein_name": "Transcription factor MYB59", "refseq_ac": "NP_200786", "refseq_name": "myb domain protein 59", "gene_name": "MYB59", "gene_names_uniprotkb": "MYB59; MTH12.19", "gene_names_refseq": "ATMYB59-1; ATMYB59-2; ATMYB59-3; ATMYB59; MTH12.19; MTH12_19; MYB DOMAIN PROTEIN 59; MYB59; myb domain protein 59", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4JL84", "url": "https://www.uniprot.org/uniprotkb/Q4JL84" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q4JL84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4JL84" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q4JL84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4JL84", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLVNFVHLFGDRRWDFVAKV", "down_seq": "GLNRTGKSCRLRWVNYLHPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4JL84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4JL84" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q4JL84-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4JL84-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "Q4JL84-1", "length": 235, "uniprot_id": "MYB59_ARATH", "protein_name": "Transcription factor MYB59", "refseq_ac": "NP_200786", "refseq_name": "myb domain protein 59", "gene_name": "MYB59", "gene_names_uniprotkb": "MYB59; MTH12.19", "gene_names_refseq": "ATMYB59-1; ATMYB59-2; ATMYB59-3; ATMYB59; MTH12.19; MTH12_19; MYB DOMAIN PROTEIN 59; MYB59; myb domain protein 59", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4JL84", "url": "https://www.uniprot.org/uniprotkb/Q4JL84" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q4JL84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4JL84" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q4JL84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4JL84", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VHLFGDRRWDFVAKVSGLNR", "down_seq": "GKSCRLRWVNYLHPGLKRGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4JL84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4JL84" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q4JL84-1.40.40", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4PSN0-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "Q4PSN0-1", "length": 335, "uniprot_id": "PME29_ARATH", "protein_name": "Probable pectinesterase 29", "refseq_ac": "NP_189055", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME29", "gene_names_uniprotkb": "PME29; ARATH29; MUJ8.16", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PSN0", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PSN0", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GMAFLGRPWRGYSRVIFYNS", "down_seq": "LTDVVVPEGWDAWNFVGHEN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn262", "evidence": [ { "id": "Q4PSN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "262", "end_pos": "262" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PSN0-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q4PSN0-1", "length": 335, "uniprot_id": "PME29_ARATH", "protein_name": "Probable pectinesterase 29", "refseq_ac": "NP_189055", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME29", "gene_names_uniprotkb": "PME29; ARATH29; MUJ8.16", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PSN0", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PSN0", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EAKPFGVYQQQVFVDQSGHG", "down_seq": "FTTIQKAIDSVPINNRHWFF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn43", "evidence": [ { "id": "Q4PSN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "262", "end_pos": "262" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PSN0-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q4PSN0-1", "length": 335, "uniprot_id": "PME29_ARATH", "protein_name": "Probable pectinesterase 29", "refseq_ac": "NP_189055", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME29", "gene_names_uniprotkb": "PME29; ARATH29; MUJ8.16", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PSN0", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PSN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4PSN0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CFGSGANIGRRVKWVKKLSE", "down_seq": "AIQNLADLSFINRGGWVEDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4PSN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4PSN0" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "262", "end_pos": "262" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q4PSN0-1.320.320", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PSN0-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q4PSN0-1", "length": 335, "uniprot_id": "PME29_ARATH", "protein_name": "Probable pectinesterase 29", "refseq_ac": "NP_189055", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME29", "gene_names_uniprotkb": "PME29; ARATH29; MUJ8.16", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PSN0", "url": "https://www.uniprot.org/uniprotkb/Q4PSN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PSN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4PSN0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRVKWVKKLSESAIQNLADL", "down_seq": "FINRGGWVEDLPIPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4PSN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4PSN0" } ], "site_lbl": "Ser320" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "262", "end_pos": "262" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "311", "end_pos": "311" }, { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q4PSN0-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PSX1-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q4PSX1-1", "length": 107, "uniprot_id": "CLE10_ARATH", "protein_name": "CLAVATA3/ESR (CLE)-related protein 10", "refseq_ac": "NP_564958", "refseq_name": "CLAVATA3/ESR-RELATED 10", "gene_name": "CLE10", "gene_names_uniprotkb": "CLE10; F23O10.10", "gene_names_refseq": "CLAVATA3/ESR-RELATED 10; CLE10; F10D13.2; F10D13_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PSX1", "url": "https://www.uniprot.org/uniprotkb/Q4PSX1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PSX1", "url": "https://www.uniprot.org/uniprotkb/Q4PSX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RPINILIVFFLLTTARAATR", "down_seq": "WTNRTHRTVPKVQHAYYAYP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn27", "evidence": [ { "id": "Q4PSX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PSX1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q4PSX1-1.30.30", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PSX1-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "Q4PSX1-1", "length": 107, "uniprot_id": "CLE10_ARATH", "protein_name": "CLAVATA3/ESR (CLE)-related protein 10", "refseq_ac": "NP_564958", "refseq_name": "CLAVATA3/ESR-RELATED 10", "gene_name": "CLE10", "gene_names_uniprotkb": "CLE10; F23O10.10", "gene_names_refseq": "CLAVATA3/ESR-RELATED 10; CLE10; F10D13.2; F10D13_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PSX1", "url": "https://www.uniprot.org/uniprotkb/Q4PSX1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PSX1", "url": "https://www.uniprot.org/uniprotkb/Q4PSX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NILIVFFLLTTARAATRNWT", "down_seq": "RTHRTVPKVQHAYYAYPHRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn30", "evidence": [ { "id": "Q4PSX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PSX1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "27", "end_pos": "27" }, { "start_pos": "30", "end_pos": "30" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q4PSX1-1.27.27", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PT34-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q4PT34-1", "length": 288, "uniprot_id": "PME56_ARATH", "protein_name": "Probable pectinesterase 56", "refseq_ac": "NP_172604", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME56", "gene_names_uniprotkb": "PME56; ARATH56; T23J18.3", "gene_names_refseq": "T23J18.3; T23J18_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PT34", "url": "https://www.uniprot.org/uniprotkb/Q4PT34" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PT34", "url": "https://www.uniprot.org/uniprotkb/Q4PT34", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LTAQSREEDTATSGFSFQKC", "down_seq": "ISASSDLTPIKGTVKTFLGR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "Q4PT34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PT34#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PT34-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "Q4PT34-1", "length": 288, "uniprot_id": "PME56_ARATH", "protein_name": "Probable pectinesterase 56", "refseq_ac": "NP_172604", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME56", "gene_names_uniprotkb": "PME56; ARATH56; T23J18.3", "gene_names_refseq": "T23J18.3; T23J18_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PT34", "url": "https://www.uniprot.org/uniprotkb/Q4PT34" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PT34", "url": "https://www.uniprot.org/uniprotkb/Q4PT34", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TPDQALKDKADLIVAKDGSG", "down_seq": "FTTVNEAVAAAPENGVKPFV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn55", "evidence": [ { "id": "Q4PT34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PT34#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4PT34-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q4PT34-1", "length": 288, "uniprot_id": "PME56_ARATH", "protein_name": "Probable pectinesterase 56", "refseq_ac": "NP_172604", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "PME56", "gene_names_uniprotkb": "PME56; ARATH56; T23J18.3", "gene_names_refseq": "T23J18.3; T23J18_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4PT34", "url": "https://www.uniprot.org/uniprotkb/Q4PT34" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4PT34", "url": "https://www.uniprot.org/uniprotkb/Q4PT34", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VIYIKEGLYKEVIRIGKKKT", "down_seq": "LTLVGDGRDLTVLSGDLNGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "Q4PT34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4PT34#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4V3C1-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "Q4V3C1-1", "length": 524, "uniprot_id": "MED8_ARATH", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "refseq_ac": "NP_178407", "refseq_name": "mediator subunit 8", "gene_name": "MED8", "gene_names_uniprotkb": "MED8; MED8_1; SETH10; T17M13.24", "gene_names_refseq": "MED8; T17M13.24; T17M13_24; mediator subunit 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3C1", "url": "https://www.uniprot.org/uniprotkb/Q4V3C1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q4V3C1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q4V3C1" }, { "database": "O-GlcNAc Atlas", "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GQSQIPALHDMHGQAQQKFQ", "down_seq": "SHGQHQMPYSQPMGAHQQFQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr360", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q4V3C1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "370", "end_pos": "370" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "394", "end_pos": "394" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q4V3C1-1.361.361", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q4V3C1-1.370.370", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V3C1-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q4V3C1-1", "length": 524, "uniprot_id": "MED8_ARATH", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "refseq_ac": "NP_178407", "refseq_name": "mediator subunit 8", "gene_name": "MED8", "gene_names_uniprotkb": "MED8; MED8_1; SETH10; T17M13.24", "gene_names_refseq": "MED8; T17M13.24; T17M13_24; mediator subunit 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3C1", "url": "https://www.uniprot.org/uniprotkb/Q4V3C1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q4V3C1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q4V3C1" }, { "database": "O-GlcNAc Atlas", "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSQIPALHDMHGQAQQKFQT", "down_seq": "HGQHQMPYSQPMGAHQQFQA", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser361", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q4V3C1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "370", "end_pos": "370" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "394", "end_pos": "394" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q4V3C1-1.360.360", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4V3C1-1.370.370", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V3C1-1.370.370", "start_pos": 370, "end_pos": 370, "uniprot_canonical_ac": "Q4V3C1-1", "length": 524, "uniprot_id": "MED8_ARATH", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "refseq_ac": "NP_178407", "refseq_name": "mediator subunit 8", "gene_name": "MED8", "gene_names_uniprotkb": "MED8; MED8_1; SETH10; T17M13.24", "gene_names_refseq": "MED8; T17M13.24; T17M13_24; mediator subunit 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3C1", "url": "https://www.uniprot.org/uniprotkb/Q4V3C1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q4V3C1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q4V3C1" }, { "database": "O-GlcNAc Atlas", "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MHGQAQQKFQTSHGQHQMPY", "down_seq": "QPMGAHQQFQARQLSGGHIQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser370", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q4V3C1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "370", "end_pos": "370" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "394", "end_pos": "394" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q4V3C1-1.360.360", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4V3C1-1.361.361", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V3C1-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q4V3C1-1", "length": 524, "uniprot_id": "MED8_ARATH", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "refseq_ac": "NP_178407", "refseq_name": "mediator subunit 8", "gene_name": "MED8", "gene_names_uniprotkb": "MED8; MED8_1; SETH10; T17M13.24", "gene_names_refseq": "MED8; T17M13.24; T17M13_24; mediator subunit 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3C1", "url": "https://www.uniprot.org/uniprotkb/Q4V3C1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q4V3C1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q4V3C1" }, { "database": "O-GlcNAc Atlas", "id": "Q4V3C1", "url": "https://oglcnac.org/atlas/detail/Q4V3C1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V3C1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q4V3C1", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q4V3C1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q4V3C1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "370", "end_pos": "370" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "394", "end_pos": "394" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V3C1-1.394.394", "start_pos": 394, "end_pos": 394, "uniprot_canonical_ac": "Q4V3C1-1", "length": 524, "uniprot_id": "MED8_ARATH", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "refseq_ac": "NP_178407", "refseq_name": "mediator subunit 8", "gene_name": "MED8", "gene_names_uniprotkb": "MED8; MED8_1; SETH10; T17M13.24", "gene_names_refseq": "MED8; T17M13.24; T17M13_24; mediator subunit 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3C1", "url": "https://www.uniprot.org/uniprotkb/Q4V3C1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q4V3C1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V3C1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q4V3C1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V3C1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAHQQFQARQLSGGHIQHSM", "down_seq": "QGQLNPAMNRHLNQFSGGAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q4V3C1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V3C1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser394" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "360", "end_pos": "360" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "370", "end_pos": "370" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "394", "end_pos": "394" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP10-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q4VP10-1", "length": 91, "uniprot_id": "LUR13_ARATH", "protein_name": "Protein LURE 1.3", "refseq_ac": "NP_001032003", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.3", "gene_names_uniprotkb": "LURE1.3; CRP810_1.3; K9D7; MWF20", "gene_names_refseq": "AtLURE1.3; CRP810_1.3; LURE 1.3; LURE1.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP10", "url": "https://www.uniprot.org/uniprotkb/Q4VP10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4VP10", "url": "https://www.uniprot.org/uniprotkb/Q4VP10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PFIFLITLLIFVSSCTSILI", "down_seq": "ESSDEERTYSFSPTTSPFDP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn24", "evidence": [ { "id": "Q4VP10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4VP10#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "24", "end_pos": "24" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q500V2-1.514.514", "start_pos": 514, "end_pos": 514, "uniprot_canonical_ac": "Q500V2-1", "length": 559, "uniprot_id": "FLY2_ARATH", "protein_name": "Transmembrane E3 ubiquitin-protein ligase FLY2", "refseq_ac": "NP_179657", "refseq_name": "RING/U-box superfamily protein", "gene_name": "FLY2", "gene_names_uniprotkb": "FLY2; F23N11.3", "gene_names_refseq": "F23N11.3; FLY2; FLYING SAUCER 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q500V2", "url": "https://www.uniprot.org/uniprotkb/Q500V2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q500V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500V2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q500V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500V2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SYYRRLDHNVNRSRDCVICM", "down_seq": "TIDLRHRINDCMVTPCEHIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q500V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500V2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr514" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "514", "end_pos": "514" }, { "start_pos": "515", "end_pos": "515" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q500V2-1.515.515", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q500V2-1.515.515", "start_pos": 515, "end_pos": 515, "uniprot_canonical_ac": "Q500V2-1", "length": 559, "uniprot_id": "FLY2_ARATH", "protein_name": "Transmembrane E3 ubiquitin-protein ligase FLY2", "refseq_ac": "NP_179657", "refseq_name": "RING/U-box superfamily protein", "gene_name": "FLY2", "gene_names_uniprotkb": "FLY2; F23N11.3", "gene_names_refseq": "F23N11.3; FLY2; FLYING SAUCER 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q500V2", "url": "https://www.uniprot.org/uniprotkb/Q500V2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q500V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500V2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q500V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500V2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YYRRLDHNVNRSRDCVICMT", "down_seq": "IDLRHRINDCMVTPCEHIFH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q500V2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q500V2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr515" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "514", "end_pos": "514" }, { "start_pos": "515", "end_pos": "515" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q500V2-1.514.514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56X76-1.476.476", "start_pos": 476, "end_pos": 476, "uniprot_canonical_ac": "Q56X76-1", "length": 621, "uniprot_id": "RH39_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 39", "refseq_ac": "NP_849348", "refseq_name": "RH39", "gene_name": "RH39", "gene_names_uniprotkb": "RH39; F17A8.80", "gene_names_refseq": "F17A8.80; F17A8_80; RH39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56X76", "url": "https://www.uniprot.org/uniprotkb/Q56X76" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q56X76", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56X76", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LHRTGRTARMGAKGKVTSLV", "down_seq": "RKDQMLAARIEEAMRNNESL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56X76", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56X76" } ], "site_lbl": "Ser476" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "476", "end_pos": "476" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56YU0-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q56YU0-1", "length": 501, "uniprot_id": "AL2C4_ARATH", "protein_name": "Aldehyde dehydrogenase family 2 member C4", "refseq_ac": "NP_566749", "refseq_name": "aldehyde dehydrogenase 2C4", "gene_name": "ALDH2C4", "gene_names_uniprotkb": "ALDH2C4; MOB24.3; REF1", "gene_names_refseq": "ALDH1A; ALDH2C4; REDUCED EPIDERMAL FLUORESCENCE1; REF1; aldehyde dehydrogenase 1A; aldehyde dehydrogenase 2C4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis.", "journal": "The Plant cell", "date": "2004-02", "authors": "Nair Ramesh B, Bastress Kristen L, Ruegger Max O, Denault Jeff W, Chapple Clint", "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" } ], "reference": [ { "type": "PubMed", "id": "14729911", "url": "https://glygen.org/publication/PubMed/14729911" } ] } ], "crossref": [ { "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14729911", "url": "https://glygen.org/publication/PubMed/14729911", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "AGAADKIHGETLKMTRQSLF", "down_seq": "YTLKEPIGVVGNIIPWNFPS", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In ref1-7; reduced activity on sinapaldehyde.", "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" }, { "database": "PubMed", "id": "14729911", "url": "https://glygen.org/publication/PubMed/14729911" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56YU0-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q56YU0-1", "length": 501, "uniprot_id": "AL2C4_ARATH", "protein_name": "Aldehyde dehydrogenase family 2 member C4", "refseq_ac": "NP_566749", "refseq_name": "aldehyde dehydrogenase 2C4", "gene_name": "ALDH2C4", "gene_names_uniprotkb": "ALDH2C4; MOB24.3; REF1", "gene_names_refseq": "ALDH1A; ALDH2C4; REDUCED EPIDERMAL FLUORESCENCE1; REF1; aldehyde dehydrogenase 1A; aldehyde dehydrogenase 2C4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis.", "journal": "The Plant cell", "date": "2004-02", "authors": "Nair Ramesh B, Bastress Kristen L, Ruegger Max O, Denault Jeff W, Chapple Clint", "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" } ], "reference": [ { "type": "PubMed", "id": "14729911", "url": "https://glygen.org/publication/PubMed/14729911" } ] } ], "crossref": [ { "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14729911", "url": "https://glygen.org/publication/PubMed/14729911", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "YQDEIFGPVMSLMKFKTVEE", "down_seq": "IKCANNTKYGLAAGILSQDI", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In ref1-6; reduced activity on sinapaldehyde.", "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" }, { "database": "PubMed", "id": "14729911", "url": "https://glygen.org/publication/PubMed/14729911" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56YU0-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "Q56YU0-1", "length": 501, "uniprot_id": "AL2C4_ARATH", "protein_name": "Aldehyde dehydrogenase family 2 member C4", "refseq_ac": "NP_566749", "refseq_name": "aldehyde dehydrogenase 2C4", "gene_name": "ALDH2C4", "gene_names_uniprotkb": "ALDH2C4; MOB24.3; REF1", "gene_names_refseq": "ALDH1A; ALDH2C4; REDUCED EPIDERMAL FLUORESCENCE1; REF1; aldehyde dehydrogenase 1A; aldehyde dehydrogenase 2C4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56YU0", "url": "https://www.uniprot.org/uniprotkb/Q56YU0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q56YU0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56YU0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q56YU0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56YU0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STDVGRKIMQAAAASNLKKV", "down_seq": "LELGGKSPLLIFNDADIDKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56YU0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56YU0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser266" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56ZQ3-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q56ZQ3-1", "length": 628, "uniprot_id": "VSR4_ARATH", "protein_name": "Vacuolar-sorting receptor 4", "refseq_ac": "NP_179079", "refseq_name": "vacuolar sorting receptor 4", "gene_name": "VSR4", "gene_names_uniprotkb": "VSR4; BP80A; ELP2B; F26C24.14", "gene_names_refseq": "1; BP80-2; MTV4; T6B13.2; VACUOLAR SORTING RECEPTOR 2; VSR-2; VSR2; VSR4; binding protein of 80 kDa 2; vacuolar sorting receptor 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZQ3", "url": "https://www.uniprot.org/uniprotkb/Q56ZQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q56ZQ3", "url": "https://www.uniprot.org/uniprotkb/Q56ZQ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EPLITMDTPEEDVSSAKYIE", "down_seq": "ITIPSALVTKGFGEKLKKAI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn148", "evidence": [ { "id": "Q56ZQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q56ZQ3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "434", "end_pos": "434" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] } ]