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Cell. Mol. Med.", "date": "2021", "authors": "Khan Alam, Fahad Talukdar Mohammad, Akther Tanjima, Zaman Tanjeena, Hasan Md Faruk, Islam Khan Md Rafiqual, Islam Mohammad Saiful, Kishi Shuji", "reference": { "type": "PubMed", "id": "33277797", "url": "https://pubmed.ncbi.nlm.nih.gov/33277797" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZU13-1", "protein_name": "Protein spinster homolog 1", "gene_name": "spns1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZU13", "url": "https://www.uniprot.org/uniprotkb/Q7ZU13" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33277797", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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F, Handley MT, Hadzhiev Y, Masood I, Straatman-Iwanowska AA, Cullinane AR, McNeill A, Pasha SS, Kirby GA, Foster K, Ahmed Z, Morton JE, Williams D, Graham JM, Dobyns WB, Burglen L, Ainsworth JR, Gissen P, Muller F, Maher ER, Barr FA, Aligianis IA", "reference": { "type": "PubMed", "id": "21473985", "url": "https://pubmed.ncbi.nlm.nih.gov/21473985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DHC1-1", "protein_name": "Ras-related protein Rab-18-B", "gene_name": "rab18b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9NP72-1", "protein_name": "Ras-related protein Rab-18", "gene_name": "RAB18", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6DHC1", "url": "https://www.uniprot.org/uniprotkb/Q6DHC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21473985", "abstract": "", 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Biol.", "date": "2008", "authors": "Bessarab Dmitri A, Chong Shang-Wei, Srinivas Bhylahalli Purushottam, Korzh Vladimir", "reference": { "type": "PubMed", "id": "18789916", "url": "https://pubmed.ncbi.nlm.nih.gov/18789916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DHF9-1", "protein_name": "Homeobox protein six1a", "gene_name": "six1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NZ04-1", "protein_name": "Homeobox protein six1b", "gene_name": "six1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6DHF9", "url": "https://www.uniprot.org/uniprotkb/Q6DHF9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18789916", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cilia-driven fluid flow in the zebrafish pronephros, brain and Kupffer's vesicle is required for normal organogenesis.", "journal": "Development (Cambridge, England)", "date": "2005-04", "authors": "Kramer-Zucker Albrecht G, Olale Felix, Haycraft Courtney J, Yoder Bradley K, Schier Alexander F, Drummond Iain A", "reference": { "type": "PubMed", "id": "15790966", "url": "https://pubmed.ncbi.nlm.nih.gov/15790966" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6IVW0-1", "protein_name": "Intraflagellar transport protein 57 homolog", "gene_name": "ift57", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6IVW0", "url": "https://www.uniprot.org/uniprotkb/Q6IVW0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15790966", 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P, Olson Gary E, Appel Bruce, Wente Susan R", "reference": { "type": "PubMed", "id": "18056639", "url": "https://pubmed.ncbi.nlm.nih.gov/18056639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6IVW0-1", "protein_name": "Intraflagellar transport protein 57 homolog", "gene_name": "ift57", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4JL91-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "ippk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6IVW0", "url": "https://www.uniprot.org/uniprotkb/Q6IVW0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18056639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Mol. 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"2018-09-12", "authors": "Jardin Nicolas, Giudicelli Fran\u00e7ois, Ten Mart\u00edn Daniel, Vitrac Ana\u00efs, De Gois St\u00e9phanie, Allison Rachel, Houart Corinne, Reid Evan, Hazan Jamil\u00e9, Fassier Coralie", "reference": { "type": "PubMed", "id": "30082270", "url": "https://pubmed.ncbi.nlm.nih.gov/30082270" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NW58-1", "protein_name": "Spastin", "gene_name": "spast", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QGX9-1", "protein_name": "Atlastin-1", "gene_name": "atl1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6NW58", "url": "https://www.uniprot.org/uniprotkb/Q6NW58" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30082270", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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diversification of the four MARCKS family members in zebrafish neural development.", "journal": "J. 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Antagonistic regulation of PAF1C and p-TEFb is required for oligodendrocyte differentiation.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2012-06-13", "authors": "Kim Suhyun, Kim Jun-Dae, Chung Ah-Young, Kim Hyung-Seok, Kim Young-Seop, Kim Myoung-Jin, Koun Soonil, Lee You Mie, Rhee Myungchull, Park Hae-Chul, Huh Tae-Lin", "reference": { "type": "PubMed", "id": "22699901", "url": "https://pubmed.ncbi.nlm.nih.gov/22699901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6NYV9-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "leo1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TT03-1", "protein_name": "Transcription factor SOX-6 isoform X1", "gene_name": "sox6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WHN7-1", "protein_name": "Parafibromin", "gene_name": "cdc73", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SHIP2, a factor associated with diet-induced obesity and insulin sensitivity, attenuates FGF signaling in vivo.", "journal": "Disease models & mechanisms", "date": "2010", "authors": "Jurynec Michael J, Grunwald David Jonah", "reference": { "type": "PubMed", "id": "20616095", "url": "https://pubmed.ncbi.nlm.nih.gov/20616095" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PBT8-1", "protein_name": "Putative fibroblast growth factor 1", "gene_name": "fgf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2I6J0-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2B", "gene_name": "inppl1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2I6J1-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2A", "gene_name": "inppl1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PBT8", "url": "https://www.uniprot.org/uniprotkb/Q6PBT8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio 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Andrea, Rinner Oliver, Mader Andreas, Gesemann Matthias, Oberhauser Vitus, Golczak Marcin, Biehlmaier Oliver, Palczewski Krzysztof, Neuhauss Stephan C F, von Lintig Johannes", "reference": { "type": "PubMed", "id": "17868371", "url": "https://pubmed.ncbi.nlm.nih.gov/17868371" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PBW5-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "rpe65a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A9C3R9-1", "protein_name": "All-trans-retinyl ester 13-cis isomerohydrolase", "gene_name": "rpe65b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PBW5", "url": "https://www.uniprot.org/uniprotkb/Q6PBW5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17868371", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Anwar S, Andrade-Elizondo PB, Sirmaci A, Parise LV, Basit S, Wali A, Ayub M, Ansar M, Ahmad W, Khan SN, Akram J, Tekin M, Riazuddin S, Cook T, Buschbeck EK, Frolenkov GI, Leal SM, Friedman TB, Ahmed ZM", "reference": { "type": "PubMed", "id": "23023331", "url": "https://pubmed.ncbi.nlm.nih.gov/23023331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PC72-1", "protein_name": "Calcium and integrin-binding family member 2", "gene_name": "cib2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O75838-1", "protein_name": "Calcium and integrin-binding family member 2", "gene_name": "CIB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P202-1", "protein_name": "Whirlin", "gene_name": "WHRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9W2Q5-1", "protein_name": "Calcium and integrin-binding family member 2", "gene_name": "Cib2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z309-1", "protein_name": "Calcium and integrin-binding 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[] } ] }, { "title": "Knockdown of zebrafish YY1a can downregulate the phosphatidylserine (PS) receptor expression, leading to induce the abnormal brain and heart development.", "journal": "Journal of biomedical science", "date": "2016-02-29", "authors": "Shiu Wei-Lun, Huang Kuan-Rong, Hung Jo-Chi, Wu Jen-Leih, Hong Jiann-Ruey", "reference": { "type": "PubMed", "id": "26924789", "url": "https://pubmed.ncbi.nlm.nih.gov/26924789" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PFM0-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "jmjd6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PFM0", "url": "https://www.uniprot.org/uniprotkb/Q6PFM0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26924789", "abstract": "", "glycosylation": [], 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WB, Chakrabartty A, Gingras AC, Sicheri F", "reference": { "type": "PubMed", "id": "21561863", "url": "https://pubmed.ncbi.nlm.nih.gov/21561863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PHH3-1", "protein_name": "Programmed cell death protein 10-A", "gene_name": "pdcd10a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PHH3", "url": "https://www.uniprot.org/uniprotkb/Q6PHH3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21561863", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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[] } ] }, { "title": "Modulation of zebrafish pitx3 expression in the primordia of the pituitary, lens, olfactory epithelium and cranial ganglia by hedgehog and nodal signaling.", "journal": "Genesis (New York, N.Y. : 2000)", "date": "2005-01", "authors": "Zilinski Carolyn A, Shah Rina, Lane Mary Ellen, Jamrich Milan", "reference": { "type": "PubMed", "id": "15645439", "url": "https://pubmed.ncbi.nlm.nih.gov/15645439" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6QU75-1", "protein_name": "Pituitary homeobox 3", "gene_name": "pitx3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6QU75", "url": "https://www.uniprot.org/uniprotkb/Q6QU75" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15645439", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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