[ { "title": "DRT111/SFPS Splicing Factor Controls Abscisic Acid Sensitivity during Seed Development and Germination.", "journal": "Plant physiology", "date": "2020-06", "authors": "Punzo Paola, Ruggiero Alessandra, Possenti Marco, Perrella Giorgio, Nurcato Roberta, Costa Antonello, Morelli Giorgio, Grillo Stefania, Batelli Giorgia", "reference": { "type": "PubMed", "id": "32123040", "url": "https://pubmed.ncbi.nlm.nih.gov/32123040" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42698-1", "protein_name": "DNA-damage-repair/toleration protein 111", "gene_name": "DRT111", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU44-1", "protein_name": "Splicing factor-like protein 1", "gene_name": "SF1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.32123040", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ 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"journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2022-11", "authors": "Kathare Praveen Kumar, Xin Ruijiao, Ganesan Abirama Sundari, June Viviana M, Reddy Anireddy S N, Huq Enamul", "reference": { "type": "PubMed", "id": "36282917", "url": "https://pubmed.ncbi.nlm.nih.gov/36282917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42698-1", "protein_name": "DNA-damage-repair/toleration protein 111", "gene_name": "DRT111", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49570-1", "protein_name": "SUPPRESSOR-OF-WHITE-APRICOT/SURP RNA-binding domain containing protein 1", "gene_name": "SWAP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L716-1", "protein_name": "Splicing factor U2af large subunit B", "gene_name": "U2AF65B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5J3-1", "protein_name": "Protein RRC1", "gene_name": "RRC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43333-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "U2A'", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P14713-1", "protein_name": "Phytochrome B", "gene_name": "PHYB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S709-1", "protein_name": "Splicing factor U2af small subunit A", "gene_name": "ATU2AF35A; U2AF35A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42698", "url": "https://www.uniprot.org/uniprotkb/P42698" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.36282917", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional reclassification of the putative cinnamyl alcohol dehydrogenase multigene family in Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2004", "authors": "Kim Sung-Jin, Kim Mi-Ran, Bedgar Diana L, Moinuddin Syed G A, Cardenas Claudia L, Davin Laurence B, Kang ChulHee, Lewis Norman G", "reference": { "type": "PubMed", "id": "14745009", "url": "https://pubmed.ncbi.nlm.nih.gov/14745009" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42734-1", "protein_name": "Probable cinnamyl alcohol dehydrogenase 9", "gene_name": "CAD9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65621-1", "protein_name": "Probable cinnamyl alcohol dehydrogenase 6", "gene_name": "CAD6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAI3-1", "protein_name": "Probable cinnamyl alcohol dehydrogenase 1", "gene_name": "CAD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49482-1", "protein_name": "Cinnamyl alcohol dehydrogenase 5", "gene_name": "CAD5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48523-1", "protein_name": "Cinnamyl alcohol 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"protein_name": "Probable cinnamyl alcohol dehydrogenase 6", "gene_name": "CAD6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAI3-1", "protein_name": "Probable cinnamyl alcohol dehydrogenase 1", "gene_name": "CAD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49482-1", "protein_name": "Cinnamyl alcohol dehydrogenase 5", "gene_name": "CAD5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48523-1", "protein_name": "Cinnamyl alcohol dehydrogenase 4", "gene_name": "CAD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q02971-1", "protein_name": "Cinnamyl alcohol dehydrogenase 7", "gene_name": "CAD7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q02972-1", "protein_name": "Cinnamyl alcohol dehydrogenase 8", "gene_name": "CAD8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ10-1", "protein_name": "Cinnamyl alcohol dehydrogenase 3", "gene_name": "CAD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ25-1", "protein_name": "Cinnamyl alcohol dehydrogenase 2", "gene_name": "CAD2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42734", "url": "https://www.uniprot.org/uniprotkb/P42734" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17467016", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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Genet.", "date": "1997", "authors": "Zwirn P, Stary S, Luschnig C, Bachmair A", "reference": { "type": "PubMed", "id": "9371881", "url": "https://pubmed.ncbi.nlm.nih.gov/9371881" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42745-1", "protein_name": "Ubiquitin-conjugating enzyme E2 2", "gene_name": "UBC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42745", "url": "https://www.uniprot.org/uniprotkb/P42745" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9371881", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and differential expression of dhn/lea/rab-like genes during cold acclimation and drought stress in Arabidopsis thaliana.", "journal": "Plant Mol. Biol.", "date": "1994", "authors": "Welin B V, Olson A, Nylander M, Palva E T", "reference": { "type": "PubMed", "id": "7948863", "url": "https://pubmed.ncbi.nlm.nih.gov/7948863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42758-1", "protein_name": "Dehydrin Xero 2", "gene_name": "XERO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P25863-1", "protein_name": "Dehydrin Xero 1", "gene_name": "XERO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42759-1", "protein_name": "Dehydrin ERD10", "gene_name": "ERD10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42758", "url": "https://www.uniprot.org/uniprotkb/P42758" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7948863", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Bot.", "date": "2002", "authors": "Bray Elizabeth A", "reference": { "type": "PubMed", "id": "12102506", "url": "https://pubmed.ncbi.nlm.nih.gov/12102506" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43295-1", "protein_name": "Probable cysteine protease RD19B", "gene_name": "RD19B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SUL1-1", "protein_name": "Probable cysteine protease RD19C", "gene_name": "RD19C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43296-1", "protein_name": "Cysteine protease RD19A", "gene_name": "RD19A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12102506", "abstract": "", "glycosylation": [], 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Biol.", "date": "1994", "authors": "Williams J, Bulman M, Huttly A, Phillips A, Neill S", "reference": { "type": "PubMed", "id": "8018874", "url": "https://pubmed.ncbi.nlm.nih.gov/8018874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43295-1", "protein_name": "Probable cysteine protease RD19B", "gene_name": "RD19B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43295", "url": "https://www.uniprot.org/uniprotkb/P43295" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8018874", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity.", "journal": "Plant Physiol. Biochem.", "date": "2013", "authors": "Saito Kazuki, Yonekura-Sakakibara Keiko, Nakabayashi Ryo, Higashi Yasuhiro, Yamazaki Mami, Tohge Takayuki, Fernie Alisdair R", "reference": { "type": "PubMed", "id": "23473981", "url": "https://pubmed.ncbi.nlm.nih.gov/23473981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P45724-1", "protein_name": "Phenylalanine ammonia-lyase 2", "gene_name": "PAL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WW21-1", "protein_name": "UDP-glycosyltransferase 75C1", "gene_name": "UGT75C1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVW3-1", "protein_name": "Anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase", "gene_name": "A3G2XYLT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64810-1", "protein_name": "Serine carboxypeptidase-like 10", "gene_name": "SCPL10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFQ5-1", "protein_name": "Flavonol synthase 3", "gene_name": "FLS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LR73-1", "protein_name": "Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2", "gene_name": "3AT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9P6-1", "protein_name": "Flavonol-3-O-rhamnosyltransferase", "gene_name": "UGT78D1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SD85-1", "protein_name": "Flavonoid 3'-monooxygenase", "gene_name": "CYP75B1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQ95-1", "protein_name": "UDP-glycosyltransferase 73C6", "gene_name": "UGT73C6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWB4-1", "protein_name": "Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1", "gene_name": "3AT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZI4-1", "protein_name": "Beta-glucosidase 10", "gene_name": "BGLU10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZW3-1", "protein_name": "Probable chalcone--flavanone isomerase 3", "gene_name": "CHI3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84J37-1", "protein_name": "Laccase-15", "gene_name": "TT10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P13114-1", "protein_name": "Chalcone synthase", "gene_name": "CHS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P35510-1", "protein_name": "Phenylalanine ammonia-lyase 1", "gene_name": "PAL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P41088-1", "protein_name": "Chalcone--flavanone isomerase 1", "gene_name": "CHI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P51102-1", "protein_name": "Dihydroflavonol 4-reductase", "gene_name": "DFRA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96330-1", "protein_name": "Flavonol synthase/flavanone 3-hydroxylase", "gene_name": "FLS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96323-1", "protein_name": "Leucoanthocyanidin dioxygenase", "gene_name": "LDOX", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FE46-1", "protein_name": "Glutathione S-transferase F12", "gene_name": "GSTF12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK25-1", "protein_name": "Flavone 3'-O-methyltransferase 1", "gene_name": "OMT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFJ8-1", "protein_name": "Flavonol 3-O-glucosyltransferase", "gene_name": "UGT78D2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJB4-1", "protein_name": "Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase", "gene_name": "5MAT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNE6-1", "protein_name": "Flavonol 7-O-rhamnosyltransferase", "gene_name": "UGT89C1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFK0-1", "protein_name": "UDP-glycosyltransferase 78D3", "gene_name": "UGT78D3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92994-1", "protein_name": "Trans-cinnamate 4-monooxygenase", "gene_name": "CYP73A5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38970-1", "protein_name": "Acetyl-CoA carboxylase 1", "gene_name": "ACC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43128-1", "protein_name": "ATPase 10, plasma membrane-type", "gene_name": "AHA10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYT3-1", "protein_name": "Protein DETOXIFICATION 41", "gene_name": "DTX41; TT12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S777-1", "protein_name": "4-coumarate--CoA ligase 3", "gene_name": "4CL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S818-1", "protein_name": "Naringenin,2-oxoglutarate 3-dioxygenase", "gene_name": "F3H", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEV0-1", "protein_name": "Anthocyanidin reductase", "gene_name": "BAN", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45724", "url": "https://www.uniprot.org/uniprotkb/P45724" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23473981", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1994", "authors": "Bartel B, Fink G R", "reference": { "type": "PubMed", "id": "8022831", "url": "https://pubmed.ncbi.nlm.nih.gov/8022831" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46010-1", "protein_name": "Nitrilase 3", "gene_name": "NIT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46011-1", "protein_name": "Bifunctional nitrilase/nitrile hydratase NIT4", "gene_name": "NIT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P32961-1", "protein_name": "Nitrilase 1", "gene_name": "NIT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P32962-1", "protein_name": "Nitrilase 2", "gene_name": "NIT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46010", "url": "https://www.uniprot.org/uniprotkb/P46010" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8022831", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural analysis of the nit2/nit1/nit3 gene cluster encoding nitrilases, enzymes catalyzing the terminal activation step in indole-acetic acid biosynthesis in Arabidopsis thaliana.", "journal": "Plant Mol. Biol.", "date": "1998", "authors": "Hillebrand H, Bartling D, Weiler E W", "reference": { "type": "PubMed", "id": "9484465", "url": "https://pubmed.ncbi.nlm.nih.gov/9484465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46010-1", "protein_name": "Nitrilase 3", "gene_name": "NIT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P32961-1", "protein_name": "Nitrilase 1", "gene_name": "NIT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46010", "url": "https://www.uniprot.org/uniprotkb/P46010" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9484465", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and expression analysis of the mevalonate kinase gene from Arabidopsis thaliana.", "journal": "Plant Mol. Biol.", "date": "2000", "authors": "Lluch M A, Masferrer A, Arr\u00f3 M, Boronat A, Ferrer A", "reference": { "type": "PubMed", "id": "10794536", "url": "https://pubmed.ncbi.nlm.nih.gov/10794536" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46086-1", "protein_name": "Mevalonate kinase", "gene_name": "F21A20.160", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46086", "url": "https://www.uniprot.org/uniprotkb/P46086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10794536", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterisation of an Arabidopsis thaliana cDNA encoding glutathione synthetase.", "journal": "FEBS Lett.", "date": "1995", "authors": "Rawlins M R, Leaver C J, May M J", "reference": { "type": "PubMed", "id": "8521973", "url": "https://pubmed.ncbi.nlm.nih.gov/8521973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46416-1", "protein_name": "Glutathione synthetase, chloroplastic", "gene_name": "GSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46416", "url": "https://www.uniprot.org/uniprotkb/P46416" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8521973", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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J. Biochem.", "date": "1996", "authors": "Ullmann P, Gondet L, Potier S, Bach T J", "reference": { "type": "PubMed", "id": "8612643", "url": "https://pubmed.ncbi.nlm.nih.gov/8612643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46416-1", "protein_name": "Glutathione synthetase, chloroplastic", "gene_name": "GSH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46416", "url": "https://www.uniprot.org/uniprotkb/P46416" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8612643", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of the cDNA and genomic clones for glutathione synthetase from Arabidopsis thaliana and complementation of a gsh2 mutant in fission yeast.", "journal": "Plant Mol. 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional characterization of inhibitor-3, a regulatory subunit of protein phosphatase 1 in plants.", "journal": "Plant Physiol.", "date": "2009", "authors": "Takemiya Atsushi, Ariyoshi Chie, Shimazaki Ken-Ichiro", "reference": { "type": "PubMed", "id": "19329567", "url": "https://pubmed.ncbi.nlm.nih.gov/19329567" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48485-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 5", "gene_name": "TOPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8F7-1", "protein_name": "Protein phosphatase 1 regulatory subunit INH3", "gene_name": "INH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82734-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 8", "gene_name": "TOPP8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82733-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 7", "gene_name": "TOPP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P30366-1", "protein_name": 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Biol.", "date": "1993", "authors": "Smith R D, Walker J C", "reference": { "type": "PubMed", "id": "7678768", "url": "https://pubmed.ncbi.nlm.nih.gov/7678768" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48485-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 5", "gene_name": "TOPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P30366-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 1", "gene_name": "TOPP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48482-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 2", "gene_name": "TOPP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48483-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 3", "gene_name": "TOPP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48484-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 4", "gene_name": "TOPP4", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A protein phosphatase 1 from Arabidopsis thaliana restores temperature sensitivity of a Schizosaccharomyces pombe cdc25ts/wee1-double mutant.", "journal": "Plant J.", "date": "1993", "authors": "Ferreira P C, Hemerly A S, Van Montagu M, Inz\u00e9 D", "reference": { "type": "PubMed", "id": "8220477", "url": "https://pubmed.ncbi.nlm.nih.gov/8220477" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48485-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 5", "gene_name": "TOPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48482-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 2", "gene_name": "TOPP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P48485", "url": 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the lytic vacuoles of vegetative tissues during senescence and under various stressed conditions.", "journal": "Plant J.", "date": "1999", "authors": "Kinoshita T, Yamada K, Hiraiwa N, Kondo M, Nishimura M, Hara-Nishimura I", "reference": { "type": "PubMed", "id": "10417725", "url": "https://pubmed.ncbi.nlm.nih.gov/10417725" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49047-1", "protein_name": "Vacuolar-processing enzyme alpha-isozyme", "gene_name": "T19L18.25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39044-1", "protein_name": "Vacuolar-processing enzyme beta-isozyme", "gene_name": "bVPE", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39119-1", "protein_name": "Vacuolar-processing enzyme gamma-isozyme", "gene_name": "F26P21.60", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49047", "url": 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the vacuolar processing enzyme family of cysteine proteases.", "journal": "The Plant cell", "date": "2004-01", "authors": "Gruis Darren, Schulze Jan, Jung Rudolf", "reference": { "type": "PubMed", "id": "14688293", "url": "https://pubmed.ncbi.nlm.nih.gov/14688293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49047-1", "protein_name": "Vacuolar-processing enzyme alpha-isozyme", "gene_name": "T19L18.25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWA9-1", "protein_name": "12S seed storage protein CRD", "gene_name": "CRD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96318-1", "protein_name": "12S seed storage protein CRC", "gene_name": "CRC; CRU3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P15455-1", "protein_name": "12S seed storage protein CRA1", "gene_name": "CRA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJX8-1", "protein_name": "Vacuolar-processing enzyme delta-isozyme", 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Genet.", "date": "1999", "authors": "Torki M, Mandaron P, Thomas F, Quigley F, Mache R, Falconet D", "reference": { "type": "PubMed", "id": "10485285", "url": "https://pubmed.ncbi.nlm.nih.gov/10485285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49062-1", "protein_name": "Exopolygalacturonase", "gene_name": "PGA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P49063-1", "protein_name": "Exopolygalacturonase", "gene_name": "F17A17.19", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49062", "url": "https://www.uniprot.org/uniprotkb/P49062" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10485285", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanisms of feedback inhibition and sequential firing of active sites in plant aspartate transcarbamoylase.", "journal": "Nat. Commun.", "date": "2021", "authors": "Bellin Leo, Del Ca\u00f1o-Ochoa Francisco, Vel\u00e1zquez-Campoy Adri\u00e1n, M\u00f6hlmann Torsten, Ram\u00f3n-Maiques Santiago", "reference": { "type": "PubMed", "id": "33574254", "url": "https://pubmed.ncbi.nlm.nih.gov/33574254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49077-1", "protein_name": "Aspartate carbamoyltransferase, chloroplastic", "gene_name": "PYRB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49077", "url": "https://www.uniprot.org/uniprotkb/P49077" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.33574254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.). Integration of a prokaryotic core into a larger complex with organelle-specific functions.", "journal": "Eur. J. Biochem.", "date": "2000", "authors": "Pfannschmidt T, Ogrzewalla K, Baginsky S, Sickmann A, Meyer H E, Link G", "reference": { "type": "PubMed", "id": "10601874", "url": "https://pubmed.ncbi.nlm.nih.gov/10601874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50546-1", "protein_name": "DNA-directed RNA polymerase subunit beta", "gene_name": "rpoB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50546", "url": "https://www.uniprot.org/uniprotkb/P50546" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10601874", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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development.", "journal": "Plant J.", "date": "1996", "authors": "Huang S, An Y Q, McDowell J M, McKinney E C, Meagher R B", "reference": { "type": "PubMed", "id": "8771777", "url": "https://pubmed.ncbi.nlm.nih.gov/8771777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53494-1", "protein_name": "Actin-4", "gene_name": "ACT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P53497-1", "protein_name": "Actin-12", "gene_name": "ACT12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P53494", "url": "https://www.uniprot.org/uniprotkb/P53494" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8771777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8566777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 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"date": "2001", "authors": "Rook F, Corke F, Card R, Munz G, Smith C, Bevan M W", "reference": { "type": "PubMed", "id": "11439129", "url": "https://pubmed.ncbi.nlm.nih.gov/11439129" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55231-1", "protein_name": "Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic", "gene_name": "APL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C826-1", "protein_name": "Xanthoxin dehydrogenase", "gene_name": "ABA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0MES8-1", "protein_name": "Ethylene-responsive transcription factor ABI4", "gene_name": "ABI4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55231", "url": "https://www.uniprot.org/uniprotkb/P55231" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 236, "end_pos": 236, "sequence_org": "A", "sequence_mut": "V", "comment": "In isi4; reduced absicic acid synthesis.", "evidence": [ { "database": "UniProtKB", "id": "Q9C826", "url": "https://www.uniprot.org/uniprotkb/Q9C826" }, { "database": "PubMed", "id": "11439129", "url": "https://pubmed.ncbi.nlm.nih.gov/11439129" } ], "uniprot_canonical_ac": "Q9C826-1" }, { "start_pos": 69, "end_pos": 69, "sequence_org": "E", "sequence_mut": "K", "comment": "In abi4-104/sis5-4; impaired ABA signaling pathway in response to sucrose.", "evidence": [ { "database": "UniProtKB", "id": "A0MES8", "url": "https://www.uniprot.org/uniprotkb/A0MES8" }, { "database": "PubMed", "id": "10972885", "url": "https://pubmed.ncbi.nlm.nih.gov/10972885" }, { "database": "PubMed", "id": "11439129", "url": "https://pubmed.ncbi.nlm.nih.gov/11439129" } ], "uniprot_canonical_ac": "A0MES8-1" } ], "record_id": "pubmed.11439129", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of multiple cDNA clones for ADP-glucose pyrophosphorylase from Arabidopsis thaliana.", "journal": "Plant Mol. Biol.", "date": "1993", "authors": "Villand P, Olsen O A, Kleczkowski L A", "reference": { "type": "PubMed", "id": "8292792", "url": "https://pubmed.ncbi.nlm.nih.gov/8292792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55231-1", "protein_name": "Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic", "gene_name": "APL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P55228-1", "protein_name": "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic", "gene_name": "APS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P55229-1", "protein_name": "Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic", "gene_name": "ADG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P55230-1", "protein_name": "Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic", "gene_name": "APL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55231", "url": "https://www.uniprot.org/uniprotkb/P55231" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8292792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A chaperonin subunit with unique structures is essential for folding of a specific substrate.", "journal": "PLoS Biol.", "date": "2011", "authors": "Peng Lianwei, Fukao Yoichiro, Myouga Fumiyoshi, Motohashi Reiko, Shinozaki Kazuo, Shikanai Toshiharu", "reference": { "type": "PubMed", "id": "21483722", "url": "https://pubmed.ncbi.nlm.nih.gov/21483722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56753-1", "protein_name": "NAD(P)H-quinone oxidoreductase subunit H, chloroplastic", "gene_name": "ndhH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0Z361-1", "protein_name": "Chaperonin 60 subunit beta 3, chloroplastic", "gene_name": "CPN60B3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C667-1", "protein_name": "Chaperonin 60 subunit beta 4, chloroplastic", "gene_name": "CPN60B4; 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HSP93-III", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10427773", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.", "journal": "J. Biol. Chem.", "date": "2001", "authors": "Peltier J B, Ytterberg J, Liberles D A, Roepstorff P, van Wijk K J", "reference": { "type": "PubMed", "id": "11278690", "url": "https://pubmed.ncbi.nlm.nih.gov/11278690" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L770-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic", "gene_name": "CLPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ35-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic", "gene_name": "CLPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ36-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic", "gene_name": "CLPR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WL3-1", "protein_name": "ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic", "gene_name": "CLPT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B60-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 4, chloroplastic", "gene_name": "CLPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FN42-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 2, mitochondrial", "gene_name": "CLPP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11278690", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease.", "journal": "Plant Mol. Biol.", "date": "2001", "authors": "Halperin T, Zheng B, Itzhaki H, Clarke A K, Adam Z", "reference": { "type": "PubMed", "id": "11352464", "url": "https://pubmed.ncbi.nlm.nih.gov/11352464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K7F6-1", "protein_name": "CLP protease regulatory subunit CLPX2, mitochondrial", "gene_name": "CLPX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FN42-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 2, mitochondrial", "gene_name": "CLPP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK07-1", "protein_name": "CLP protease regulatory subunit CLPX1, mitochondrial", "gene_name": "CLPX1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11352464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of chloroplast Clp proteins in Arabidopsis: localization, tissue specificity and stress responses.", "journal": "Physiol. Plantarum", "date": "2002", "authors": "Zheng Bo, Halperin Tami, Hruskova-Heidingsfeldova Olga, Adam Zach, Clarke Adrian K", "reference": { "type": "PubMed", "id": "11982939", "url": "https://pubmed.ncbi.nlm.nih.gov/11982939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FI56-1", "protein_name": "Chaperone protein ClpC1, chloroplastic", "gene_name": "CLPC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42762-1", "protein_name": "Chaperone protein ClpD, chloroplastic", "gene_name": "CLPD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B60-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 4, chloroplastic", "gene_name": "CLPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11982939", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.", "journal": "J. Biol. Chem.", "date": "2004", "authors": "Peltier Jean-Beno\u00eet, Ripoll Daniel R, Friso Giulia, Rudella Andrea, Cai Yang, Ytterberg Jimmy, Giacomelli Lisa, Pillardy Jaroslaw, van Wijk Klaas J", "reference": { "type": "PubMed", "id": "14593120", "url": "https://pubmed.ncbi.nlm.nih.gov/14593120" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L770-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic", "gene_name": "CLPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ35-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic", "gene_name": "CLPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ36-1", "protein_name": "ATP-dependent Clp protease proteolytic 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"uniprot_canonical_ac": "Q9FN42-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 2, mitochondrial", "gene_name": "CLPP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SX29-1", "protein_name": "ATP-dependent Clp protease adapter protein CLPS1, chloroplastic", "gene_name": "CPLS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14593120", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Editing of plastid RNA in Arabidopsis thaliana ecotypes.", "journal": "Plant J.", "date": "2005", "authors": "Tillich Michael, Funk Helena T, Schmitz-Linneweber Christian, Poltnigg Peter, Sabater Bartolom\u00e9, Martin Mercedes, Maier Rainer M", "reference": { "type": "PubMed", "id": "16115067", "url": "https://pubmed.ncbi.nlm.nih.gov/16115067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56776-1", "protein_name": "Cytochrome b6-f complex subunit 6", "gene_name": "petL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56804-1", "protein_name": "Small ribosomal subunit protein uS14c", "gene_name": "rps14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16115067", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.", "journal": "Plant Cell", "date": "2006", "authors": "Rudella Andrea, Friso Giulia, Alonso Jose M, Ecker Joseph R, van Wijk Klaas J", "reference": { "type": "PubMed", "id": "16766689", "url": "https://pubmed.ncbi.nlm.nih.gov/16766689" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L770-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic", "gene_name": "CLPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ35-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic", "gene_name": "CLPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ36-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic", "gene_name": "CLPR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB10-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic", "gene_name": "CLPR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B60-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 4, chloroplastic", "gene_name": "CLPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16766689", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis.", "journal": "Plant Cell", "date": "2006", "authors": "Sj\u00f6gren Lars L E, Stanne Tara M, Zheng Bo, Sutinen Sirkka, Clarke Adrian K", "reference": { "type": "PubMed", "id": "16980539", "url": "https://pubmed.ncbi.nlm.nih.gov/16980539" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L770-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic", "gene_name": "CLPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ35-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic", "gene_name": "CLPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ36-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic", "gene_name": "CLPR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB10-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic", "gene_name": "CLPR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WL3-1", "protein_name": "ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic", "gene_name": "CLPT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B60-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 4, chloroplastic", "gene_name": "CLPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZD6-1", "protein_name": "Polyprotein of EF-Ts, chloroplastic", "gene_name": "PETs", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16980539", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis.", "journal": "Plant Cell", "date": "2011", "authors": "Olinares Paul Dominic B, Kim Jitae, Davis Jerrold I, van Wijk Klaas J", "reference": { "type": "PubMed", "id": "21712416", "url": "https://pubmed.ncbi.nlm.nih.gov/21712416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L770-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic", "gene_name": "CLPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ35-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic", "gene_name": "CLPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ36-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic", "gene_name": "CLPR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB10-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic", "gene_name": "CLPR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B60-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 4, chloroplastic", "gene_name": "CLPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21712416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The chloroplast ATP-dependent Clp protease in vascular plants - new dimensions and future challenges.", "journal": "Physiol. Plantarum", "date": "2012", "authors": "Clarke Adrian K", "reference": { "type": "PubMed", "id": "22085372", "url": "https://pubmed.ncbi.nlm.nih.gov/22085372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56772-1", "protein_name": "Chloroplastic ATP-dependent Clp protease proteolytic subunit 1", "gene_name": "clpP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L770-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic", "gene_name": "CLPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ35-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic", "gene_name": "CLPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XJ36-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic", "gene_name": "CLPR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GW78-1", "protein_name": "ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic", "gene_name": "CLPT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB10-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic", "gene_name": "CLPR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WL3-1", "protein_name": "ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic", "gene_name": "CLPT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FI56-1", "protein_name": "Chaperone protein ClpC1, chloroplastic", "gene_name": "CLPC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42762-1", "protein_name": "Chaperone protein ClpD, chloroplastic", "gene_name": "CLPD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B60-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 4, chloroplastic", "gene_name": "CLPP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FN42-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 2, mitochondrial", "gene_name": "CLPP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAA2-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 6, chloroplastic", "gene_name": "CLPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ7-1", "protein_name": "Chaperone protein ClpC2, chloroplastic", "gene_name": "CLPC2; HSP93-III", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S834-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 5, chloroplastic", "gene_name": "CLPP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXJ6-1", "protein_name": "ATP-dependent Clp protease proteolytic subunit 3, chloroplastic", "gene_name": "CLPP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56772", "url": "https://www.uniprot.org/uniprotkb/P56772" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22085372", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly.", "journal": "Plant Cell", "date": "2010", "authors": "Armbruster Ute, Z\u00fchlke Jessica, Rengstl Birgit, Kreller Renate, Makarenko Elina, R\u00fchle Thilo, Sch\u00fcnemann Danja, Jahns Peter, Weisshaar Bernd, Nickelsen J\u00f6rg, Leister Dario", "reference": { "type": "PubMed", "id": "20923938", "url": "https://pubmed.ncbi.nlm.nih.gov/20923938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56777-1", "protein_name": "Photosystem II CP47 reaction center protein", "gene_name": "psbB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P62100-1", "protein_name": "Photosystem II reaction center protein I", "gene_name": "psbI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTD9-1", "protein_name": "Uncharacterized protein PAM68-like", "gene_name": "F6N7.27", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49668-1", "protein_name": "Protein PAM68, chloroplastic", "gene_name": "PAM68", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82660-1", "protein_name": "Photosystem II stability/assembly factor HCF136, chloroplastic", "gene_name": "HCF136", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P83755-1", "protein_name": "Photosystem II protein D1", "gene_name": "psbA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56761-1", "protein_name": "Photosystem II D2 protein", "gene_name": "psbD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56778-1", "protein_name": "Photosystem II CP43 reaction center protein", "gene_name": "psbC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56780-1", "protein_name": "Photosystem II reaction center protein H", "gene_name": "psbH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBP4-1", "protein_name": "Inner membrane protein ALBINO3, chloroplastic", "gene_name": "ALB3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56777", "url": "https://www.uniprot.org/uniprotkb/P56777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20923938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P56778-1", "protein_name": "Photosystem II CP43 reaction center protein", "gene_name": "psbC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56777", "url": "https://www.uniprot.org/uniprotkb/P56777" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24632535", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Biol. Chem.", "date": "2001", "authors": "Burks E A, Bezerra P P, Le H, Gallie D R, Browning K S", "reference": { "type": "PubMed", "id": "11042177", "url": "https://pubmed.ncbi.nlm.nih.gov/11042177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56820-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "gene_name": "TIF3D1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZA3-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit K", "gene_name": "TIF3K1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LD55-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit A", "gene_name": "TIF3A1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5Z1-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit B", "gene_name": "TIF3B1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38884-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit I", "gene_name": "TIF3I1; TRIP-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5Z3-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit E", "gene_name": "TIF3E1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5Z2-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit H", "gene_name": "TIF3H1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P56820", "url": "https://www.uniprot.org/uniprotkb/P56820" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11042177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis.", "journal": "Plant physiology", "date": "2010-11", "authors": "Tomaz Tiago, Bagard Matthieu, Pracharoenwattana Itsara, Lind\u00e9n Pernilla, Lee Chun Pong, Carroll Adam J, Str\u00f6her Elke, Smith Steven M, Gardestr\u00f6m Per, Millar A Harvey", "reference": { "type": "PubMed", "id": "20876337", "url": "https://pubmed.ncbi.nlm.nih.gov/20876337" }, 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Biol.", "date": "1993", "authors": "Pang Q, Hays J B, Rajagopal I, Schaefer T S", "reference": { "type": "PubMed", "id": "8329681", "url": "https://pubmed.ncbi.nlm.nih.gov/8329681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P57750-1", "protein_name": "Phosphoacetylglucosamine mutase", "gene_name": "DRT101", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q05212-1", "protein_name": "DNA damage-repair/toleration protein DRT102", "gene_name": "DRT102", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57750", "url": "https://www.uniprot.org/uniprotkb/P57750" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8329681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Structure, localization, and expression of their promoters in transgenic tobacco.", "journal": "J. Biol. Chem.", "date": "1990", "authors": "Callis J, Raasch J A, Vierstra R D", "reference": { "type": "PubMed", "id": "2165066", "url": "https://pubmed.ncbi.nlm.nih.gov/2165066" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59232-1", "protein_name": "Ubiquitin-ribosomal protein eS31y fusion protein", "gene_name": "RPS27AB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P59233-1", "protein_name": "Ubiquitin-ribosomal protein eS31x fusion protein", "gene_name": "RPS27AC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42202-1", "protein_name": "Ubiquitin-ribosomal protein eL40y fusion protein", "gene_name": "RPL40B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DHA6-1", "protein_name": "Ubiquitin-ribosomal protein eL40z fusion protein", "gene_name": "RPL40A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59232", "url": "https://www.uniprot.org/uniprotkb/P59232" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.2165066", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cryo-EM structure of the respiratory I + III(2) supercomplex from Arabidopsis thaliana at 2 A resolution.", "journal": "Nat. Plants", "date": "2023", "authors": "Klusch Niklas, Dreimann Maximilian, Senkler Jennifer, Rugen Nils, K\u00fchlbrandt Werner, Braun Hans-Peter", "reference": { "type": "PubMed", "id": "36585502", "url": "https://pubmed.ncbi.nlm.nih.gov/36585502" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60497-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 6", "gene_name": "ND6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93306-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2", "gene_name": "NAD7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60497", "url": "https://www.uniprot.org/uniprotkb/P60497" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.36585502", "abstract": "", "glycosylation": [], "mutagenesis": [], 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seeds of Arabidopsis.", "journal": "J. Biol. Chem.", "date": "2002", "authors": "Okumoto Sakiko, Schmidt Roberto, Tegeder Mechthild, Fischer Wolf N, Rentsch Doris, Frommer Wolf B, Koch Wolfgang", "reference": { "type": "PubMed", "id": "12244056", "url": "https://pubmed.ncbi.nlm.nih.gov/12244056" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P92934-1", "protein_name": "Amino acid permease 6", "gene_name": "AAP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80592-1", "protein_name": "Amino acid permease 8", "gene_name": "AAP8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FF99-1", "protein_name": "Probable amino acid permease 7", "gene_name": "AAP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42400-1", "protein_name": "Amino acid permease 1", "gene_name": "AAP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92934", "url": "https://www.uniprot.org/uniprotkb/P92934" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12244056", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mutation in amino acid permease AAP6 reduces the amino acid content of the Arabidopsis sieve elements but leaves aphid herbivores unaffected.", "journal": "J. Exp. Bot.", "date": "2010", "authors": "Hunt Emma, Gattolin Stefano, Newbury H John, Bale Jeffrey S, Tseng Hua-Ming, Barrett David A, Pritchard Jeremy", "reference": { "type": "PubMed", "id": "19755569", "url": "https://pubmed.ncbi.nlm.nih.gov/19755569" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P92934-1", "protein_name": "Amino acid permease 6", "gene_name": "AAP6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92934", "url": "https://www.uniprot.org/uniprotkb/P92934" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19755569", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol. Rep.", "date": "2013", "authors": "Lee Jeongyeo, Han Ching-Tack, Hur Yoonkang", "reference": { "type": "PubMed", "id": "23065269", "url": "https://pubmed.ncbi.nlm.nih.gov/23065269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93017-1", "protein_name": "Dormancy-associated protein homolog 1", "gene_name": "DRMH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DGG8-1", "protein_name": "Dormancy-associated protein 1", "gene_name": "DRM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23065269", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DRM1 and DRM2 expression regulation: potential role of splice variants in response to stress and environmental factors in Arabidopsis.", "journal": "Mol. Genet. Genomics", "date": "2014", "authors": "Rae Georgina M, Uversky Vladimir N, David Karine, Wood Marion", "reference": { "type": "PubMed", "id": "24442277", "url": "https://pubmed.ncbi.nlm.nih.gov/24442277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93017-1", "protein_name": "Dormancy-associated protein homolog 1", "gene_name": "DRMH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DGG8-1", "protein_name": "Dormancy-associated protein 1", "gene_name": "DRM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93017", "url": "https://www.uniprot.org/uniprotkb/P93017" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24442277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2018", "authors": "Takemoto Kodai, Ebine Kazuo, Askani Jana Christin, Kr\u00fcger Falco, Gonzalez Zaida Andr\u00e9s, Ito Emi, Goh Tatsuaki, Schumacher Karin, Nakano Akihiko, Ueda Takashi", "reference": { "type": "PubMed", "id": "29463724", "url": "https://pubmed.ncbi.nlm.nih.gov/29463724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93043-1", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "gene_name": "VPS41", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04157-1", "protein_name": "Ras-related protein RABG3b", "gene_name": "RABG3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I312-1", "protein_name": "Vacuolar sorting protein 3", "gene_name": "VPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94KJ7-1", "protein_name": "Vacuolar protein-sorting-associated protein 33 homolog", "gene_name": "ATVPS33; VPS33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M376-1", "protein_name": "Vesicle-associated membrane protein 727", "gene_name": "VAMP727", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L5Y0-1", "protein_name": "Vacuolar sorting protein 39", "gene_name": "VPS39", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VQ0-1", "protein_name": "Protein VACUOLELESS1", "gene_name": "VCL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SN68-1", "protein_name": "Ras-related protein RABF2b", "gene_name": "ARA7; 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Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Radisky DC, Snyder WB, Emr SD, Kaplan J", "reference": { "type": "PubMed", "id": "9159129", "url": "https://pubmed.ncbi.nlm.nih.gov/9159129" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93043-1", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "gene_name": "VPS41", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P49754-1", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "gene_name": "VPS41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38959-1", "protein_name": "Vacuolar protein sorting-associated protein 41", "gene_name": "VPS41", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93043", "url": "https://www.uniprot.org/uniprotkb/P93043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9159129", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of T-DNA-mediated translational beta-glucuronidase gene fusions.", "journal": "Plant Mol. Biol.", "date": "1998", "authors": "Kertbundit S, Linacero R, Rouz\u00e9 P, Galis I, Macas J, Deboeck F, Renckens S, Hernalsteens J P, De Greve H", "reference": { "type": "PubMed", "id": "9484433", "url": "https://pubmed.ncbi.nlm.nih.gov/9484433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93050-1", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "gene_name": "RKF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93051-1", "protein_name": "Sugar transporter ERD6-like 7", "gene_name": "ZIF2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9484433", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification by PCR of receptor-like protein kinases from Arabidopsis flowers.", "journal": "Plant Mol. Biol.", "date": "1998", "authors": "Takahashi T, Mu J H, Gasch A, Chua N H", "reference": { "type": "PubMed", "id": "9687063", "url": "https://pubmed.ncbi.nlm.nih.gov/9687063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93050-1", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RKF3", "gene_name": "RKF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMB9-1", "protein_name": "Cysteine-rich receptor-like protein kinase 1", "gene_name": "CRK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FXF2-1", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase RFK1", "gene_name": "RKF1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93050", "url": "https://www.uniprot.org/uniprotkb/P93050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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"Heazlewood J L, Whelan J, Millar A H", "reference": { "type": "PubMed", "id": "12681508", "url": "https://pubmed.ncbi.nlm.nih.gov/12681508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93303-1", "protein_name": "ATP synthase protein YMF19", "gene_name": "YMF19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q04613-1", "protein_name": "ATP synthase protein MI25", "gene_name": "ATP4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93303", "url": "https://www.uniprot.org/uniprotkb/P93303" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12681508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Biol.", "date": "2001", "authors": "Huang Z, Andrianov V M, Han Y, Howell S H", "reference": { "type": "PubMed", "id": "11725951", "url": "https://pubmed.ncbi.nlm.nih.gov/11725951" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93829-1", "protein_name": "PRA1 family protein D", "gene_name": "PRA1D", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93829", "url": "https://www.uniprot.org/uniprotkb/P93829" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11725951", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Stockinger E J, Gilmour S J, Thomashow M F", "reference": { "type": "PubMed", "id": "9023378", "url": "https://pubmed.ncbi.nlm.nih.gov/9023378" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93835-1", "protein_name": "Dehydration-responsive element-binding protein 1B", "gene_name": "DREB1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93835", "url": "https://www.uniprot.org/uniprotkb/P93835" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9023378", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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-responsive gene expression.", "journal": "Biochem. 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expression.", "journal": "Plant J.", "date": "1998", "authors": "Gilmour S J, Zarka D G, Stockinger E J, Salazar M P, Houghton J M, Thomashow M F", "reference": { "type": "PubMed", "id": "9881163", "url": "https://pubmed.ncbi.nlm.nih.gov/9881163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93835-1", "protein_name": "Dehydration-responsive element-binding protein 1B", "gene_name": "DREB1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYS6-1", "protein_name": "Dehydration-responsive element-binding protein 1C", "gene_name": "DREB1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0L0-1", "protein_name": "Dehydration-responsive element-binding protein 1A", "gene_name": "DREB1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93835", "url": "https://www.uniprot.org/uniprotkb/P93835" } ], "common_name": "Mouse-ear cress", 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night.", "journal": "Plant Mol. Biol.", "date": "1999", "authors": "Staiger D, Apel K, Trepp G", "reference": { "type": "PubMed", "id": "10487221", "url": "https://pubmed.ncbi.nlm.nih.gov/10487221" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P94072-1", "protein_name": "Germin-like protein subfamily 3 member 3", "gene_name": "GER3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P94072", "url": "https://www.uniprot.org/uniprotkb/P94072" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10487221", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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Biol.", "date": "1992", "authors": "Mattsson J, S\u00f6derman E, Svenson M, Borkird C, Engstr\u00f6m P", "reference": { "type": "PubMed", "id": "1349836", "url": "https://pubmed.ncbi.nlm.nih.gov/1349836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00466-1", "protein_name": "Homeobox-leucine zipper protein HAT7", "gene_name": "HAT7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q00466", "url": "https://www.uniprot.org/uniprotkb/Q00466" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.1349836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1994", "authors": "Schena M, Davis R W", "reference": { "type": "PubMed", "id": "7915839", "url": "https://pubmed.ncbi.nlm.nih.gov/7915839" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00466-1", "protein_name": "Homeobox-leucine zipper protein HAT7", "gene_name": "HAT7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46600-1", "protein_name": "Homeobox-leucine zipper protein HAT1", "gene_name": "HAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46602-1", "protein_name": "Homeobox-leucine zipper protein HAT3", "gene_name": "HAT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46665-1", "protein_name": "Homeobox-leucine zipper protein HAT14", "gene_name": "HAT14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46601-1", "protein_name": "Homeobox-leucine zipper protein HAT2", "gene_name": "HAT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46603-1", "protein_name": "Homeobox-leucine zipper protein HAT9", "gene_name": "HAT9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46604-1", "protein_name": "Homeobox-leucine zipper protein HAT22", "gene_name": "HAT22", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q00466", "url": "https://www.uniprot.org/uniprotkb/Q00466" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7915839", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Brain proteins in plants: an Arabidopsis homolog to neurotransmitter pathway activators is part of a DNA binding complex.", "journal": "Proc. 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