[ { "title": "Cloning and characterization of the human UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IV-homologue (hGnT-IV-H) gene.", "journal": "Journal of human genetics", "date": "1999", "authors": "Furukawa T, Youssef EM, Yatsuoka T, Yokoyama T, Makino N, Inoue H, Fukushige S, Hoshi M, Hayashi Y, Sunamura M, Horii A", "reference": { "type": "PubMed", "id": "10570912", "url": "https://pubmed.ncbi.nlm.nih.gov/10570912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11206-1", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene_name": "ST3GAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15907-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1", "gene_name": "ST6GAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92186-1", "protein_name": "Alpha-2,8-sialyltransferase 8B", "gene_name": "ST8SIA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60513-1", "protein_name": "Beta-1,4-galactosyltransferase 4", "gene_name": "B4GALT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43286-1", "protein_name": "Beta-1,4-galactosyltransferase 5", "gene_name": "B4GALT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61647-1", "protein_name": "Alpha-2,8-sialyltransferase 8F", "gene_name": "ST8SIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43173-1", "protein_name": "Alpha-N-acetylneuraminate alpha-2,8-sialyltransferase ST8SIA3", "gene_name": "ST8SIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60909-1", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene_name": "B4GALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBX8-1", "protein_name": "Beta-1,4-galactosyltransferase 6", "gene_name": "B4GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60512-1", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene_name": "B4GALT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15291-1", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene_name": "B4GALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ53-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B", "gene_name": "MGAT4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM8-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "MGAT4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM21-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT4A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" } ], "common_name": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Suppression of tumor growth and metastasis in Mgat5-deficient mice.", "journal": "Nature medicine", "date": "2000", "authors": "Granovsky M, Fata J, Pawling J, Muller WJ, Khokha R, Dennis JW", "reference": { "type": "PubMed", "id": "10700233", "url": "https://pubmed.ncbi.nlm.nih.gov/10700233" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11206-1", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene_name": "ST3GAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15907-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1", "gene_name": "ST6GAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92186-1", "protein_name": "Alpha-2,8-sialyltransferase 8B", "gene_name": "ST8SIA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60513-1", "protein_name": "Beta-1,4-galactosyltransferase 4", "gene_name": "B4GALT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43286-1", "protein_name": "Beta-1,4-galactosyltransferase 5", "gene_name": "B4GALT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61647-1", "protein_name": "Alpha-2,8-sialyltransferase 8F", "gene_name": "ST8SIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43173-1", "protein_name": "Alpha-N-acetylneuraminate alpha-2,8-sialyltransferase ST8SIA3", "gene_name": "ST8SIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60909-1", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene_name": "B4GALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBX8-1", "protein_name": "Beta-1,4-galactosyltransferase 6", "gene_name": "B4GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60512-1", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene_name": "B4GALT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15291-1", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene_name": "B4GALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R4G6-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "Mgat5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UQ53-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B", "gene_name": "MGAT4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM8-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "MGAT4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM21-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT4A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10700233", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential biosynthesis of polysialic acid on neural cell adhesion molecule (NCAM) and oligosaccharide acceptors by three distinct alpha 2,8-sialyltransferases, ST8Sia IV (PST), ST8Sia II (STX), and ST8Sia III.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Angata K, Suzuki M, McAuliffe J, Ding Y, Hindsgaul O, Fukuda M", "reference": { "type": "PubMed", "id": "10766765", "url": "https://pubmed.ncbi.nlm.nih.gov/10766765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11206-1", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene_name": "ST3GAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15907-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1", "gene_name": "ST6GAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92186-1", "protein_name": "Alpha-2,8-sialyltransferase 8B", "gene_name": "ST8SIA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60513-1", "protein_name": "Beta-1,4-galactosyltransferase 4", 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"Beta-1,4-galactosyltransferase 3", "gene_name": "B4GALT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15291-1", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene_name": "B4GALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ53-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B", "gene_name": "MGAT4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM8-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "MGAT4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM21-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT4A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10766765", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A secreted type of beta 1,6-N-acetylglucosaminyltransferase V (GnT-V) induces tumor angiogenesis without mediation of glycosylation: a novel function of GnT-V distinct from the original glycosyltransferase activity.", "journal": "The Journal of biological chemistry", "date": "2002-05-10", "authors": "Saito Takashi, Miyoshi Eiji, Sasai Ken, Nakano Norihiko, Eguchi Hironobu, Honke Koich, Taniguchi Naoyuki", "reference": { "type": "PubMed", "id": "11872751", "url": "https://pubmed.ncbi.nlm.nih.gov/11872751" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sialyltransferase ST3Gal-IV operates as a dominant modifier of hemostasis by concealing asialoglycoprotein receptor ligands.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2002", "authors": "Ellies LG, Ditto D, Levy GG, Wahrenbrock M, Ginsburg D, Varki A, Le DT, Marth JD", "reference": { "type": "PubMed", "id": "12097641", "url": "https://pubmed.ncbi.nlm.nih.gov/12097641" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11206-1", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene_name": "ST3GAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15907-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1", "gene_name": "ST6GAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92186-1", "protein_name": 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"UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12097641", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of the 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true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5ZIB&bu=0&command=select+.A:433;+center+selection;+zoom+selection" }, "start_pos": 433, "start_aa": "Asn", "end_pos": 433, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn433", "evidence": [ { "id": "Q09328", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q09328#ptm_processing" }, { "id": "5ZIB", "database": "PDB", "url": "https://www.rcsb.org/sequence/5ZIB" }, { "id": "30140003", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30140003" }, { "id": "15084511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084511" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "6YJR", "database": "PDB", "url": "https://www.rcsb.org/structure/6YJR" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", 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"database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "15084511", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084511" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "6YJQ", "database": "PDB", "url": "https://www.rcsb.org/structure/6YJQ" } ], "mining_tool": "RLIMS-G_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q09328-1" } ], "record_id": "pubmed.15084511", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 3 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 3 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 3 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] } ] }, { "title": "beta4GalT-II is a key regulator of glycosylation of the proteins involved in neuronal development.", "journal": "Biochemical and biophysical research communications", "date": "2005", "authors": "Sasaki N, Manya H, Okubo R, Kobayashi K, Ishida H, Toda T, Endo T, Nishihara S", "reference": { "type": "PubMed", "id": "15939404", "url": "https://pubmed.ncbi.nlm.nih.gov/15939404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11206-1", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene_name": "ST3GAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15907-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1", "gene_name": "ST6GAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92186-1", "protein_name": "Alpha-2,8-sialyltransferase 8B", "gene_name": "ST8SIA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60513-1", "protein_name": "Beta-1,4-galactosyltransferase 4", "gene_name": "B4GALT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43286-1", "protein_name": "Beta-1,4-galactosyltransferase 5", "gene_name": "B4GALT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61647-1", "protein_name": "Alpha-2,8-sialyltransferase 8F", "gene_name": "ST8SIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43173-1", "protein_name": "Alpha-N-acetylneuraminate alpha-2,8-sialyltransferase ST8SIA3", "gene_name": "ST8SIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60909-1", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene_name": "B4GALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBX8-1", "protein_name": "Beta-1,4-galactosyltransferase 6", "gene_name": "B4GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60512-1", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene_name": "B4GALT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15291-1", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene_name": "B4GALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ53-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B", "gene_name": "MGAT4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM8-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "MGAT4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM21-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT4A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15939404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aberrant expression of N-acetylglucosaminyltransferase-IVa and IVb (GnT-IVa and b) in pancreatic cancer.", "journal": "Biochemical and biophysical research communications", "date": "2006", "authors": "Ide Y, Miyoshi E, Nakagawa T, Gu J, Tanemura M, Nishida T, Ito T, Yamamoto H, Kozutsumi Y, Taniguchi N", "reference": { "type": "PubMed", "id": "16434023", "url": "https://pubmed.ncbi.nlm.nih.gov/16434023" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { 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"Kinetic properties and substrate specificities of two recombinant human N-acetylglucosaminyltransferase-IV isozymes.", "journal": "Glycoconjugate journal", "date": "2006", "authors": "Oguri S, Yoshida A, Minowa MT, Takeuchi M", "reference": { "type": "PubMed", "id": "17006639", "url": "https://pubmed.ncbi.nlm.nih.gov/17006639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11206-1", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene_name": "ST3GAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15907-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1", "gene_name": "ST6GAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92186-1", "protein_name": "Alpha-2,8-sialyltransferase 8B", "gene_name": "ST8SIA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60513-1", "protein_name": "Beta-1,4-galactosyltransferase 4", "gene_name": "B4GALT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43286-1", "protein_name": "Beta-1,4-galactosyltransferase 5", "gene_name": "B4GALT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61647-1", "protein_name": "Alpha-2,8-sialyltransferase 8F", "gene_name": "ST8SIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43173-1", "protein_name": "Alpha-N-acetylneuraminate alpha-2,8-sialyltransferase ST8SIA3", "gene_name": "ST8SIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60909-1", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene_name": "B4GALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBX8-1", "protein_name": "Beta-1,4-galactosyltransferase 6", "gene_name": "B4GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60512-1", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene_name": "B4GALT3", "tax_name": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A secreted type of beta1,6 N-acetylglucosaminyltransferase V (GnT-V), a novel angiogenesis inducer, is regulated by gamma-secretase.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2006", "authors": "Nakahara S, Saito T, Kondo N, Moriwaki K, Noda K, Ihara S, Takahashi M, Ide Y, Gu J, Inohara H, Katayama T, Tohyama M, Kubo T, Taniguchi N, Miyoshi E", "reference": { "type": "PubMed", "id": "17142794", "url": "https://pubmed.ncbi.nlm.nih.gov/17142794" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q09328-1", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 29, "end_pos": 29, "sequence_org": "L", "sequence_mut": "D", "comment": "No effect on the biosynthesis of the secreted form.", "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" }, { "database": "PubMed", "id": "17142794", "url": "https://pubmed.ncbi.nlm.nih.gov/17142794" } ], "uniprot_canonical_ac": "Q09328-1" }, { "start_pos": 30, "end_pos": 30, "sequence_org": "L", "sequence_mut": "D", "comment": "No effect on the biosynthesis of the secreted form.", "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" }, { "database": "PubMed", "id": "17142794", "url": "https://pubmed.ncbi.nlm.nih.gov/17142794" } ], "uniprot_canonical_ac": "Q09328-1" }, { "start_pos": 31, "end_pos": 31, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on the biosynthesis of the secreted form.", "evidence": [ { "database": "UniProtKB", "id": "Q09328", "url": "https://www.uniprot.org/uniprotkb/Q09328" }, { "database": "PubMed", "id": "17142794", "url": "https://pubmed.ncbi.nlm.nih.gov/17142794" } ], "uniprot_canonical_ac": "Q09328-1" } ], "record_id": "pubmed.17142794", 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-glycan alterations are associated with drug resistance in human hepatocellular carcinoma.", "journal": "Molecular cancer", "date": "2007", "authors": "Kudo T, Nakagawa H, Takahashi M, Hamaguchi J, Kamiyama N, Yokoo H, Nakanishi K, Nakagawa T, Kamiyama T, Deguchi 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.", "journal": "Nature communications", 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"glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "Recognition of glycan and protein substrates by N-acetylglucosaminyltransferase-V.", "journal": "Biochimica et biophysica acta. 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A bleeding tendency is also observed and this results from diminished platelet aggregation. 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A bleeding tendency is also observed and this results from diminished platelet aggregation. The disease is caused by loss-of-function mutations in the gene MGAT2 (14q21)." }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG syndrome type IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG-IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG2A", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "MGAT2-CDG", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "N-acetylglucosaminyltransferase 2 deficiency", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "carbohydrate deficient glycoprotein syndrome type IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "congenital disorder of glycosylation type 2a", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "congenital disorder of glycosylation type IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG 2A", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDGS2", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "MGAT2-CDG (CDG-IIa)", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "carbohydrate-deficient glycoprotein syndrome type 2", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "carbohydrate-deficient glycoprotein syndrome, type II, formerly; 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A bleeding tendency is also observed and this results from diminished platelet aggregation. The disease is caused by loss-of-function mutations in the gene MGAT2 (14q21)." }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG syndrome type IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG-IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG2A", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "MGAT2-CDG", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "N-acetylglucosaminyltransferase 2 deficiency", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "carbohydrate deficient glycoprotein syndrome type IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "congenital disorder of glycosylation type 2a", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "congenital disorder of glycosylation type IIa", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDG 2A", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "CDGS2", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "MGAT2-CDG (CDG-IIa)", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "carbohydrate-deficient glycoprotein syndrome type 2", "description": "" }, { "id": "MONDO:0008908", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0008908", "name": "carbohydrate-deficient glycoprotein syndrome, type II, formerly; 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Biol. 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Biol. Chem.", "date": "1998", "authors": "Fischer von Mollard G, Stevens TH", "reference": { "type": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UEU0-1", "protein_name": "Vesicle transport through interaction with t-SNAREs homolog 1B", "gene_name": "VTI1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04338-1", "protein_name": "t-SNARE VTI1", "gene_name": "VTI1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UEU0", "url": "https://www.uniprot.org/uniprotkb/Q9UEU0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 130, "end_pos": 130, "sequence_org": "S", "sequence_mut": "P", "comment": "In VTI1-2; exhibits defects in TGN to PVC transport at nonpermissive temperature; when associated with T-151.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 141, "end_pos": 141, "sequence_org": "A", "sequence_mut": "S", "comment": "In VTI1-12; blocks constitutively the traffic from the late Golgi to the vacuole and blocks the transport to the cis-Golgi compartment at nonpermissive temperature; when associated with R-158.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 145, "end_pos": 145, "sequence_org": "E", "sequence_mut": "G", "comment": "In VTI1-11; displays a block in traffic to the PVC and an additional defect in retrograde traffic to the cis-Golgi; when associated with F-155.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 145, "end_pos": 145, "sequence_org": "E", "sequence_mut": "K", "comment": "In VTI1-1; exhibits defects in TGN to PVC transport at nonpermissive temperature; when associated with R-148.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 148, "end_pos": 148, "sequence_org": "G", "sequence_mut": "R", "comment": "In VTI1-1; exhibits defects in TGN to PVC transport at nonpermissive temperature; when associated with K-145.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 151, "end_pos": 151, "sequence_org": "I", "sequence_mut": "T", "comment": "In VTI1-2; exhibits defects in TGN to PVC transport at nonpermissive temperature; when associated with P-130.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 155, "end_pos": 155, "sequence_org": "L", "sequence_mut": "F", "comment": "In VTI1-11; displays a block in traffic to the PVC and an additional defect in retrograde traffic to the cis-Golgi; when associated with G-145.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" }, { "start_pos": 158, "end_pos": 158, "sequence_org": "Q", "sequence_mut": "R", "comment": "In VTI1-12; blocks constitutively the traffic from the late Golgi to the vacuole and blocks the transport to the cis-Golgi compartment at nonpermissive temperature; when associated with S-141.", "evidence": [ { "database": "UniProtKB", "id": "Q04338", "url": "https://www.uniprot.org/uniprotkb/Q04338" }, { "database": "PubMed", "id": "9446565", "url": "https://pubmed.ncbi.nlm.nih.gov/9446565" } ], "uniprot_canonical_ac": "Q04338-1" } ], "record_id": "pubmed.9446565", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A hVti1 homologue: its expression depends on population doubling levels in both normal and SV40-transformed human fibroblasts.", "journal": "Biochem. Biophys. Res. Commun.", "date": "1998", "authors": "Li HC, Tahara H, Tsuyama N, Ide T", "reference": { "type": "PubMed", "id": "9636656", "url": "https://pubmed.ncbi.nlm.nih.gov/9636656" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UEU0-1", "protein_name": "Vesicle transport through interaction with t-SNAREs homolog 1B", "gene_name": "VTI1B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UEU0", "url": "https://www.uniprot.org/uniprotkb/Q9UEU0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9636656", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rab proteins as membrane organizers.", "journal": "Nature reviews. Molecular cell biology", "date": "2001", "authors": "Zerial M, McBride H", "reference": { "type": "PubMed", "id": "11252952", "url": "https://pubmed.ncbi.nlm.nih.gov/11252952" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49368-1", "protein_name": "T-complex protein 1 subunit gamma", "gene_name": "CCT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50991-1", "protein_name": "T-complex protein 1 subunit delta", "gene_name": "CCT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32745-1", "protein_name": "Somatostatin receptor type 3", "gene_name": "SSTR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99835-1", "protein_name": "Protein smoothened", "gene_name": "SMO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SYG4-1", "protein_name": "Protein PTHB1", "gene_name": "BBS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3I7-1", "protein_name": "BBSome complex member BBS5", "gene_name": "BBS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0F7-1", "protein_name": "ADP-ribosylation factor-like protein 6", "gene_name": "ARL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAM2-1", "protein_name": "Tetratricopeptide repeat protein 8", "gene_name": "TTC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17987-1", "protein_name": "T-complex protein 1 subunit alpha", "gene_name": "TCP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QF0-1", "protein_name": "Rab-3A-interacting protein", "gene_name": "RAB3IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFJ9-1", "protein_name": "BBSome complex member BBS1", "gene_name": "BBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ6-1", "protein_name": "BBSome complex member BBS7", "gene_name": "BBS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RK4-1", "protein_name": "BBSome complex member BBS4", "gene_name": "BBS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXC9-1", "protein_name": "BBSome complex member 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Biol. Chem.", "date": "2003", "authors": "Imai Y, Soda M, Murakami T, Shoji M, Abe K, Takahashi R", "reference": { "type": "PubMed", "id": "14532270", "url": "https://pubmed.ncbi.nlm.nih.gov/14532270" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49368-1", "protein_name": "T-complex protein 1 subunit gamma", "gene_name": "CCT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99832-1", "protein_name": "T-complex protein 1 subunit eta", "gene_name": "CCT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50991-1", "protein_name": "T-complex protein 1 subunit delta", "gene_name": "CCT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17987-1", "protein_name": "T-complex protein 1 subunit alpha", "gene_name": "TCP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein 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