[ { "title": "Low UGP2 Expression Is Associated with Tumour Progression and Predicts Poor Prognosis in Hepatocellular Carcinoma.", "journal": "Disease markers", "date": "2020", "authors": "Hu Q, Shen S, Li J, Liu L, Liu X, Zhang Y, Zhou Y, Zhu W, Yu Y, Cui G", "reference": { "type": "PubMed", "id": "32733617", "url": "https://pubmed.ncbi.nlm.nih.gov/32733617" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q16851-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase", "gene_name": "UGP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q16851", "url": "https://www.uniprot.org/uniprotkb/Q16851" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32733617", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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II.", "journal": "The Journal of biological chemistry", "date": "1969", "authors": "Levine S, Illett TA, Hagman E, Hansen RG", "reference": { "type": "PubMed", "id": "5348606", "url": "https://pubmed.ncbi.nlm.nih.gov/5348606" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q16851-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase", "gene_name": "UGP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36871-1", "protein_name": "Phosphoglucomutase-1", "gene_name": "PGM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46976-1", "protein_name": "Glycogenin-1", "gene_name": "GYG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04446-1", "protein_name": "1,4-alpha-glucan-branching enzyme", "gene_name": "GBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13807-1", "protein_name": "Glycogen [starch] synthase, muscle", "gene_name": "GYS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQK1-1", "protein_name": "Protein 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P46020-1", "protein_name": "Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform", "gene_name": "PHKA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46019-1", "protein_name": "Phosphorylase b kinase regulatory subunit alpha, liver isoform", "gene_name": "PHKA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10253-1", "protein_name": "Lysosomal alpha-glucosidase", "gene_name": "GAA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36871-1", "protein_name": "Phosphoglucomutase-1", "gene_name": "PGM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93100-1", "protein_name": "Phosphorylase b kinase regulatory subunit beta", "gene_name": "PHKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46976-1", "protein_name": "Glycogenin-1", "gene_name": "GYG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04446-1", "protein_name": "1,4-alpha-glucan-branching enzyme", "gene_name": "GBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13807-1", "protein_name": "Glycogen [starch] synthase, muscle", "gene_name": "GYS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JD6-1", "protein_name": "1,5-anhydro-D-fructose reductase", "gene_name": "AKR1E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQK1-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "PPP1R3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VVB1-1", "protein_name": "E3 ubiquitin-protein ligase NHLRC1", "gene_name": "NHLRC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16816-1", "protein_name": "Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform", "gene_name": "PHKG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06737-1", "protein_name": "Glycogen phosphorylase, liver form", "gene_name": "PYGL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11216-1", "protein_name": "Glycogen phosphorylase, brain form", "gene_name": "PYGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54840-1", "protein_name": "Glycogen [starch] synthase, liver", "gene_name": "GYS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35573-1", "protein_name": "Glycogen debranching enzyme", "gene_name": "AGL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "B3EWF7-1", "protein_name": "Laforin, isoform 9", "gene_name": "EPM2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15488-1", "protein_name": "Glycogenin-2", "gene_name": "GYG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11217-1", "protein_name": "Glycogen phosphorylase, muscle form", "gene_name": "PYGM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q16851", "url": "https://www.uniprot.org/uniprotkb/Q16851" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7902568", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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liver UDPglucose pyrophosphorylase.", "journal": "European journal of biochemistry", "date": "1996", "authors": "Chang HY, Peng HL, Chao YC, Duggleby RG", "reference": { "type": "PubMed", "id": "8612650", "url": "https://pubmed.ncbi.nlm.nih.gov/8612650" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q16851-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase", "gene_name": "UGP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q16851", "url": "https://www.uniprot.org/uniprotkb/Q16851" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 123, "end_pos": 123, "sequence_org": "C", "sequence_mut": "S", "comment": "No significant loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q16851", "url": "https://www.uniprot.org/uniprotkb/Q16851" }, { "database": "PubMed", "id": 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Biol.", "date": "2001", "authors": "Khaleghpour K, Kahvejian A, De Crescenzo G, Roy G, Svitkin Y V, Imataka H, O'Connor-McCourt M, Sonenberg N", "reference": { "type": "PubMed", "id": "11438674", "url": "https://pubmed.ncbi.nlm.nih.gov/11438674" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ3-1", "protein_name": "Polyadenylate-binding protein-interacting protein 2", "gene_name": "PAIP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11438674", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays.", "journal": "EMBO reports", "date": "2002", "authors": "Lee J, Bedford MT", "reference": { "type": "PubMed", "id": "11850402", "url": "https://pubmed.ncbi.nlm.nih.gov/11850402" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WVG6-1", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "Carm1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 455, "end_pos": 455, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces methylation by CARM1 (in vitro); 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Cell. 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Virol.", "date": "2007", "authors": "Katzenellenbogen RA, Egelkrout EM, Vliet-Gregg P, Gewin LC, Gafken PR, Galloway DA", "reference": { "type": "PubMed", "id": "17267499", "url": "https://pubmed.ncbi.nlm.nih.gov/17267499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12986-1", "protein_name": "Transcriptional repressor NF-X1", "gene_name": "NFX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13310-1", "protein_name": "Polyadenylate-binding protein 4", "gene_name": "PABPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 20, "end_pos": 20, "sequence_org": "F", "sequence_mut": "A", "comment": "Reduces PABPC1 and PABC4 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q12986", "url": "https://www.uniprot.org/uniprotkb/Q12986" }, { "database": "PubMed", "id": "17267499", "url": "https://pubmed.ncbi.nlm.nih.gov/17267499" } ], "uniprot_canonical_ac": "Q12986-1" } ], "record_id": "pubmed.17267499", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The DEAD-box RNA helicase DDX3 associates with export messenger ribonucleoproteins as well as tip-associated protein and participates in translational control.", "journal": "Mol. Biol. Cell", "date": "2008", "authors": "Lai MC, Lee YH, Tarn WY", "reference": { "type": "PubMed", "id": "18596238", "url": "https://pubmed.ncbi.nlm.nih.gov/18596238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00571-1", "protein_name": "ATP-dependent RNA helicase DDX3X", "gene_name": "DDX3X", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 382, "end_pos": 382, "sequence_org": "S", "sequence_mut": "L", "comment": "Strong decrease in ATPase activity and RNA-unwinding activity. 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Virol.", "date": "2008", "authors": "Harb M, Becker MM, Vitour D, Baron CH, Vende P, Brown SC, Bolte S, Arold ST, Poncet D", "reference": { "type": "PubMed", "id": "18799579", "url": "https://pubmed.ncbi.nlm.nih.gov/18799579" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGR2-1", "protein_name": "Zinc finger CCCH domain-containing protein 7B", "gene_name": "ZC3H7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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Mol. Biol.", "date": "2010", "authors": "Kozlov Guennadi, M\u00e9nade Marie, Rosenauer Angelika, Nguyen Long, Gehring Kalle", "reference": { "type": "PubMed", "id": "20096703", "url": "https://pubmed.ncbi.nlm.nih.gov/20096703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20096703", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Poly(A)-binding protein (PABP): a common viral target.", "journal": "Biochem. 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Cell. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Critical roles of RNA helicase DDX3 and its interactions with eIF4E/PABP1 in stress granule assembly and stress response.", "journal": "Biochem. J.", "date": "2012", "authors": "Shih JW, Wang WT, Tsai TY, Kuo CY, Li HK, Wu Lee YH", "reference": { "type": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00571-1", "protein_name": "ATP-dependent RNA helicase DDX3X", "gene_name": "DDX3X", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 348, "end_pos": 348, "sequence_org": "E", "sequence_mut": "Q", "comment": "Loss of both ATPase and RNA helicase activities; decreased up-regulation of CDKN1A promoter activity and HNF4A-mediated MTTP transcriptional activation; no effect on the repression of cap- and IRES-dependent translation, WNT/beta catenin signaling, nor on stress granule assembly. Does not promote the translation of HIV-1 RNA.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "22323517", "url": "https://pubmed.ncbi.nlm.nih.gov/22323517" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "23413191", "url": "https://pubmed.ncbi.nlm.nih.gov/23413191" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 382, "end_pos": 384, "sequence_org": "SAT", "sequence_mut": "AAA", "comment": "Loss of RNA helicase, but not ATPase activity; no effect on the repression of cap- and IRES-dependent translation, WNT/beta catenin signaling, up-regulation of CDKN1A promoter activity, HNF4A-mediated MTTP transcriptional activation, nor on stress granule assembly.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "23413191", "url": "https://pubmed.ncbi.nlm.nih.gov/23413191" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" }, { "database": "PubMed", "id": "28128295", "url": "https://pubmed.ncbi.nlm.nih.gov/28128295" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 38, "end_pos": 38, "sequence_org": "Y", "sequence_mut": "A", "comment": "Impaired interaction with EIF4E; impaired stress granule formation, decreased repression of cap-dependent translation and decreased ability to enhance IRES-mediated translation. No effect on translation of HIV-1 RNA; when associated with A-43.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 43, "end_pos": 43, "sequence_org": "L", "sequence_mut": "A", "comment": "Impaired interaction with EIF4E; decreased repression of cap-dependent translation. Fails to induce stress granule assembly and to rescue cell viability after stress. No effect on translation of HIV-1 RNA; when associated with A-38.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" } ], "uniprot_canonical_ac": "O00571-1" } ], "record_id": "pubmed.21883093", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DEAD-box protein DDX3 associates with eIF4F to promote translation of selected mRNAs.", "journal": "EMBO J.", "date": "2012", "authors": "Soto-Rifo R, Rubilar PS, Limousin T, de Breyne S, Decimo D, Ohlmann T", "reference": { "type": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00571-1", "protein_name": "ATP-dependent RNA helicase DDX3X", "gene_name": "DDX3X", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 207, "end_pos": 207, "sequence_org": "Q", "sequence_mut": "A", "comment": "Does not promote the translation of HIV-1 RNA. No effect on general translation; when associated with A-200; A-230: A-347 and A-348.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "22323517", "url": "https://pubmed.ncbi.nlm.nih.gov/22323517" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 230, "end_pos": 230, "sequence_org": "K", "sequence_mut": "E", "comment": "Complete loss of ATPase and RNA-unwinding activities. Loss of HIV-1 mRNA nuclear export. Does not promote the translation of HIV-1 RNA. No effect on IFNB1 induction. No effect on RNA-binding. Loss of inhibition of NF-kappa-B-mediated transcriptional activity.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "21589879", "url": "https://pubmed.ncbi.nlm.nih.gov/21589879" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "18636090", "url": "https://pubmed.ncbi.nlm.nih.gov/18636090" }, { "database": "PubMed", "id": "15507209", "url": "https://pubmed.ncbi.nlm.nih.gov/15507209" }, { "database": "PubMed", "id": "18583960", "url": "https://pubmed.ncbi.nlm.nih.gov/18583960" }, { "database": "PubMed", "id": "27736973", "url": "https://pubmed.ncbi.nlm.nih.gov/27736973" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 348, "end_pos": 348, "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on general translation; when associated with A-200; A-207; A-230 and A-347.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "22323517", "url": "https://pubmed.ncbi.nlm.nih.gov/22323517" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 348, "end_pos": 348, "sequence_org": "E", "sequence_mut": "Q", "comment": "Loss of both ATPase and RNA helicase activities; decreased up-regulation of CDKN1A promoter activity and HNF4A-mediated MTTP transcriptional activation; no effect on the repression of cap- and IRES-dependent translation, WNT/beta catenin signaling, nor on stress granule assembly. Does not promote the translation of HIV-1 RNA.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "22323517", "url": "https://pubmed.ncbi.nlm.nih.gov/22323517" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "23413191", "url": "https://pubmed.ncbi.nlm.nih.gov/23413191" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 382, "end_pos": 382, "sequence_org": "S", "sequence_mut": "L", "comment": "Strong decrease in ATPase activity and RNA-unwinding activity. Does not promote the translation of mRNAs containing long structured 5'UTRs, including that of CCNE1. No effect on the translation of HIV-1 RNA.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "15507209", "url": "https://pubmed.ncbi.nlm.nih.gov/15507209" }, { "database": "PubMed", "id": "18596238", "url": "https://pubmed.ncbi.nlm.nih.gov/18596238" }, { "database": "PubMed", "id": "20837705", "url": "https://pubmed.ncbi.nlm.nih.gov/20837705" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 38, "end_pos": 38, "sequence_org": "Y", "sequence_mut": "A", "comment": "Impaired interaction with EIF4E; impaired stress granule formation, decreased repression of cap-dependent translation and decreased ability to enhance IRES-mediated translation. No effect on translation of HIV-1 RNA; when associated with A-43.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" } ], "uniprot_canonical_ac": "O00571-1" }, { "start_pos": 43, "end_pos": 43, "sequence_org": "L", "sequence_mut": "A", "comment": "Impaired interaction with EIF4E; decreased repression of cap-dependent translation. Fails to induce stress granule assembly and to rescue cell viability after stress. No effect on translation of HIV-1 RNA; when associated with A-38.", "evidence": [ { "database": "UniProtKB", "id": "O00571", "url": "https://www.uniprot.org/uniprotkb/O00571" }, { "database": "PubMed", "id": "17667941", "url": "https://pubmed.ncbi.nlm.nih.gov/17667941" }, { "database": "PubMed", "id": "22872150", "url": "https://pubmed.ncbi.nlm.nih.gov/22872150" }, { "database": "PubMed", "id": "21883093", "url": "https://pubmed.ncbi.nlm.nih.gov/21883093" } ], "uniprot_canonical_ac": "O00571-1" } ], "record_id": "pubmed.22872150", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interplay between polyadenylate-binding protein 1 and Kaposi's sarcoma-associated herpesvirus ORF57 in accumulation of polyadenylated nuclear RNA, a viral long noncoding RNA.", "journal": "J. Virol.", "date": "2013", "authors": "Massimelli Maria J, Majerciak Vladimir, Kruhlak Michael, Zheng Zhi-Ming", "reference": { "type": "PubMed", "id": "23077296", "url": "https://pubmed.ncbi.nlm.nih.gov/23077296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23077296", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Both G3BP1 and G3BP2 contribute to stress granule formation.", "journal": "Genes Cells", "date": "2013", "authors": "Matsuki H, Takahashi M, Higuchi M, Makokha GN, Oie M, Fujii M", "reference": { "type": "PubMed", "id": "23279204", "url": "https://pubmed.ncbi.nlm.nih.gov/23279204" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13283-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14694-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 10", "gene_name": "USP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN86-1", "protein_name": "Ras GTPase-activating protein-binding protein 2", "gene_name": "G3BP2", "tax_name": 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Biol. 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Chem.", "date": "2016", "authors": "Nawaz MS, Vik ES, Berges N, Fladeby C, Bjoras M, Dalhus B, Alseth I", "reference": { "type": "PubMed", "id": "27573237", "url": "https://pubmed.ncbi.nlm.nih.gov/27573237" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q3-1", "protein_name": "Endonuclease V", "gene_name": "ENDOV", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 52, "end_pos": 52, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes ribonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8N8Q3", "url": 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J.", "date": "2017", "authors": "Copsey AC, Cooper S, Parker R, Lineham E, Lapworth C, Jallad D, Sweet S, Morley SJ", "reference": { "type": "PubMed", "id": "28733330", "url": "https://pubmed.ncbi.nlm.nih.gov/28733330" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00571-1", "protein_name": "ATP-dependent RNA helicase DDX3X", "gene_name": "DDX3X", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14444-1", "protein_name": "Caprin-1", "gene_name": "CAPRIN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", 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Cell Res.", "date": "1994", "authors": "G\u00f6rlach M, Burd C G, Dreyfuss G", "reference": { "type": "PubMed", "id": "7908267", "url": "https://pubmed.ncbi.nlm.nih.gov/7908267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11940", "url": "https://www.uniprot.org/uniprotkb/P11940" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7908267", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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transcription.", "journal": "Nature structural & molecular biology", "date": "2007-09", "authors": "Cai Yong, Jin Jingji, Yao Tingting, Gottschalk Aaron J, Swanson Selene K, Wu Su, Shi Yang, Washburn Michael P, Florens Laurence, Conaway Ronald C, Conaway Joan W", "reference": { "type": "PubMed", "id": "17721549", "url": "https://pubmed.ncbi.nlm.nih.gov/17721549" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULG1-1", "protein_name": "Chromatin-remodeling ATPase INO80", "gene_name": "INO80", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9ULG1", "url": "https://www.uniprot.org/uniprotkb/Q9ULG1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17721549", "abstract": 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Struct. Mol. Biol.", "date": "2007", "authors": "Wu S, Shi Y, Mulligan P, Gay F, Landry J, Liu H, Lu J, Qi HH, Wang W, Nickoloff JA, Wu C, Shi Y", "reference": { "type": "PubMed", "id": "18026119", "url": "https://pubmed.ncbi.nlm.nih.gov/18026119" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULG1-1", "protein_name": "Chromatin-remodeling ATPase INO80", "gene_name": "INO80", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H9F9-1", "protein_name": "Actin-related protein 5", "gene_name": "ACTR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y265-1", "protein_name": "RuvB-like 1", "gene_name": "RUVBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y230-1", "protein_name": "RuvB-like 2", "gene_name": "RUVBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor 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J. Hum. Genet.", "date": "2017", "authors": "Guo DC, Duan XY, Regalado ES, Mellor-Crummey L, Kwartler CS, Kim D, Lieberman K, de Vries BBA, Pfundt R, Schinzel A, Kotzot D, Shen X, Yang ML, Bamshad MJ, Nickerson DA, Gornik HL, Ganesh SK, Braverman AC, Grange DK, Milewicz DM", "reference": { "type": "PubMed", "id": "27939641", "url": "https://pubmed.ncbi.nlm.nih.gov/27939641" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULG1-1", "protein_name": "Chromatin-remodeling ATPase INO80", "gene_name": "INO80", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H869-1", "protein_name": "YY1-associated protein 1", "gene_name": "YY1AP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9ULG1", "url": "https://www.uniprot.org/uniprotkb/Q9ULG1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27939641", "abstract": "", 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"uniprot_canonical_ac": "A0A0R4J8D5-1", "protein_name": "Large ribosomal subunit protein uL18m", "gene_name": "MRPL18", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A140UHW4-1", "protein_name": "Large ribosomal subunit protein uL3m", "gene_name": "MRPL3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZJ25-1", "protein_name": "Small ribosomal subunit protein uS7m", "gene_name": "MRPS7", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZJR2-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "MRPL58", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZMR4-1", "protein_name": "Large ribosomal subunit protein uL11m", "gene_name": "MRPL11", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZTW8-1", "protein_name": "Large ribosomal subunit protein bL28m", "gene_name": "MRPL28", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU56-1", "protein_name": "Large ribosomal subunit protein bL20m", "gene_name": "MRPL20", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZXA6-1", "protein_name": "Large ribosomal subunit protein mL64", "gene_name": "GADD45GIP1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A0K2-1", "protein_name": "Large ribosomal subunit protein mL49", "gene_name": "MRPL49", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RY70-1", "protein_name": "Large ribosomal subunit protein bL21m", "gene_name": "", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RW03-1", "protein_name": "Large ribosomal subunit protein mL38", "gene_name": "MRPL38", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SGC7-1", "protein_name": "Large ribosomal subunit protein uL29m", "gene_name": "MRPL47", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SU66-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "MRPS5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SR64-1", "protein_name": "Large ribosomal subunit protein mL44", "gene_name": "MRPL44", "tax_name": "Pig" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "reference": { "type": "PubMed", "id": "32602580", "url": "https://pubmed.ncbi.nlm.nih.gov/32602580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A287BIV6-1", "protein_name": "Large ribosomal subunit protein mL37", "gene_name": "MRPL37", "tax_name": 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"uniprot_canonical_ac": "A0A286ZU56-1", "protein_name": "Large ribosomal subunit protein bL20m", "gene_name": "MRPL20", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZXA6-1", "protein_name": "Large ribosomal subunit protein mL64", "gene_name": "GADD45GIP1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A0K2-1", "protein_name": "Large ribosomal subunit protein mL49", "gene_name": "MRPL49", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RY70-1", "protein_name": "Large ribosomal subunit protein bL21m", "gene_name": "", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RW03-1", "protein_name": "Large ribosomal subunit protein mL38", "gene_name": "MRPL38", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SGC7-1", "protein_name": "Large ribosomal subunit protein uL29m", "gene_name": "MRPL47", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SU66-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "MRPS5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SR64-1", "protein_name": "Large ribosomal subunit protein mL44", "gene_name": "MRPL44", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SRT0-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "MRPL46", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QZK0-1", "protein_name": "Large ribosomal subunit protein bL35m", "gene_name": "MRPL35", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R2V2-1", "protein_name": "Large ribosomal subunit protein mL40", "gene_name": "MRPL40", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R216-1", "protein_name": "Small ribosomal subunit protein mS31", "gene_name": "MRPS31", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TLP9-1", "protein_name": "Large ribosomal subunit protein bL33m", "gene_name": "MRPL33", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TXR4-1", "protein_name": "Large ribosomal subunit protein uL22m", "gene_name": "MRPL22", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY01-1", "protein_name": "Progonadoliberin", "gene_name": "GNRH2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BMP0-1", "protein_name": "Small ribosomal subunit protein uS15m", "gene_name": "MRPS15", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1W4F3-1", "protein_name": "Large ribosomal subunit protein uL30m", "gene_name": "MRPL30", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QNX8-1", "protein_name": "Mitochondrial ribosomal protein S22", "gene_name": "MRPS22", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R1G5-1", "protein_name": "Large ribosomal subunit protein mL66", "gene_name": "MRPS18A", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1UFR4-1", "protein_name": "Large ribosomal subunit protein bL34m", "gene_name": "MRPL34", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1V7Q4-1", "protein_name": "Small ribosomal subunit protein mS33", "gene_name": "MRPS33", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B2W3-1", "protein_name": "Large ribosomal subunit protein uL4m", "gene_name": "MRPL4", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QJX4-1", "protein_name": "Large ribosomal subunit protein bL19m", "gene_name": "MRPL19", "tax_name": "Pig" }, { "uniprot_canonical_ac": "K7GP19-1", "protein_name": "Large ribosomal subunit protein uL13m", "gene_name": "MRPL13", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LR45-1", "protein_name": "Large ribosomal subunit protein bL9m", "gene_name": "MRPL9", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LTC4-1", "protein_name": "Large ribosomal subunit protein bL32m", "gene_name": "MRPL32", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LU08-1", "protein_name": "Small ribosomal subunit protein uS9m", "gene_name": "MRPS9", "tax_name": "Pig" }, { "uniprot_canonical_ac": "K7GKS8-1", "protein_name": "Small ribosomal subunit protein mS39", "gene_name": "PTCD3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "Q96RP9-1", "protein_name": "Elongation factor G, mitochondrial", "gene_name": "GFM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A287A143-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "MRPL2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A731-1", "protein_name": "Ribosomal protein", "gene_name": "MRPL36", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BP93-1", "protein_name": "Mitochondrial ribosomal protein L57", "gene_name": "MRPL57", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BQA1-1", "protein_name": "Large ribosomal subunit protein mL42", "gene_name": "MRPL42", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A480W4M0-1", "protein_name": "Large ribosomal subunit protein mL39", "gene_name": "MRPL39", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1SZV4-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain containing 1", "gene_name": "CHCHD1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U6S6-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "MRPL12", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1ULI6-1", "protein_name": "Mitochondrial ribosomal protein L55", "gene_name": "MRPL55", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1S9B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZJJ6-1", "protein_name": "Small ribosomal subunit protein uS11m", "gene_name": "MRPS11", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEW3-1", "protein_name": "Small ribosomal subunit protein mS23", "gene_name": "MRPS23", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AJK6-1", "protein_name": "Mitochondrial ribosomal protein S35", "gene_name": "MRPS35", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ANU4-1", "protein_name": "Mitochondrial ribosomal protein S24", "gene_name": "MRPS24", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AVS9-1", "protein_name": "Mitochondrial ribosomal protein S34", "gene_name": "MRPS34", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BIV6", "url": "https://www.uniprot.org/uniprotkb/A0A287BIV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.32602580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 65 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "reference": { "type": "PubMed", "id": "35145322", "url": "https://pubmed.ncbi.nlm.nih.gov/35145322" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A287BMW6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "NDUFB11", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RGE3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2", "gene_name": "NDUFA2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1SN37-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial", "gene_name": "NDUFS4", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1SZP7-1", "protein_name": "NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial", "gene_name": "NDUFV1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1NRT6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13", "gene_name": "NDUFA13", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D2CGH8-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1", "gene_name": "NDUFB1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F7N8-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7", "gene_name": "NDUFA7", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R526-1", "protein_name": "NADH:ubiquinone oxidoreductase core subunit S7", "gene_name": "NDUFS7", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZNN4-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial", "gene_name": "NDUFS3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RWL7-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial", "gene_name": "NDUFB8", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1S031-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial", "gene_name": "NDUFS6", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SCH1-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "NDUFB7", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SIS9-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "NDUFA10", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SL07-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "NDUFA9", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SLR1-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8", "gene_name": "NDUFA8", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SGC6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "NDUFB5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SJP6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6", "gene_name": "NDUFA6", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SQP4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "NDUFA12", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1SV23-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "NDUFS5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QSA7-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9", "gene_name": "NDUFB9", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R3N7-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial", "gene_name": "NDUFS2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1T6M0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4", "gene_name": "NDUFB4", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1V1H9-1", "protein_name": "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial", "gene_name": "NDUFS1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BDC0-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial", "gene_name": "NDUFS8", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BAW0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5", "gene_name": "NDUFA5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BG40-1", "protein_name": "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial", "gene_name": "NDUFV2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1V766-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial", "gene_name": "NDUFB2", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VD84-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3", "gene_name": "NDUFB3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VPG4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "NDUFA3", "tax_name": "Pig" }, { "uniprot_canonical_ac": "K7GR43-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "gene_name": "NDUFA1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AAR5-1", "protein_name": "Acyl carrier protein", "gene_name": "NDUFAB1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LDC3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10", "gene_name": "NDUFB10", "tax_name": "Pig" }, { "uniprot_canonical_ac": "I3LGM4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11", "gene_name": "NDUFA11", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AWH6-1", "protein_name": "NADH:ubiquinone oxidoreductase subunit V3", "gene_name": "NDUFV3", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BMW6", "url": "https://www.uniprot.org/uniprotkb/A0A287BMW6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.35145322", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 34 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Architecture of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leitner Alexander, Bieri Philipp, Voigts-Hoffmann Felix, Erzberger Jan P, Leibundgut Marc, Aebersold Ruedi, Ban Nenad", "reference": { "type": "PubMed", "id": "24362565", "url": "https://pubmed.ncbi.nlm.nih.gov/24362565" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A287BMZ6-1", "protein_name": "Large ribosomal subunit protein uL14m", "gene_name": "MRPL14", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RHJ1-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RI89-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "MRPL16", "tax_name": "Pig" }, { "uniprot_canonical_ac": "F1RMQ4-1", "protein_name": "Large ribosomal subunit protein bL17m", "gene_name": "MRPL17", "tax_name": "Pig" }, { 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traits.", "journal": "Animal genetics", "date": "2006-08", "authors": "Kim K S, Lee J J, Shin H Y, Choi B H, Lee C K, Kim J J, Cho B W, Kim T-H", "reference": { "type": "PubMed", "id": "16879362", "url": "https://pubmed.ncbi.nlm.nih.gov/16879362" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D5KJI2-1", "protein_name": "High mobility group protein HMG-I/HMG-Y", "gene_name": "HMGA1", "tax_name": "Pig" }, { "uniprot_canonical_ac": "O97504-1", "protein_name": "Melanocortin receptor 4", "gene_name": "MC4R", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "D5KJI2", "url": "https://www.uniprot.org/uniprotkb/D5KJI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.16879362", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Genet.", "date": "2007", "authors": "Wu X, Li K, Yerle M, Pan Y C", "reference": { "type": "PubMed", "id": "17976214", "url": "https://pubmed.ncbi.nlm.nih.gov/17976214" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A7TX81-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Pig" }, { "uniprot_canonical_ac": "A7Y521-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Pig" } ], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A7TX81", "url": "https://www.uniprot.org/uniprotkb/A7TX81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "record_id": "pubmed.17976214", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "KPNA7, an oocyte- and embryo-specific karyopherin \u03b1 subtype, is required for porcine embryo development.", "journal": "Reproduction, fertility, and development", "date": "2012", "authors": "Wang Xin, Park Ki-Eun, Koser Stephanie, Liu Shihong, Magnani Luca, Cabot Ryan A", "reference": { "type": "PubMed", "id": "22281085", "url": "https://pubmed.ncbi.nlm.nih.gov/22281085" }, "referenced_glycans": [], "referenced_proteins": [ { 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