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Virol.", "date": "1995", "authors": "Ou SH, Wu F, Harrich D, Garcia-Martinez LF, Gaynor RB", "reference": { "type": "PubMed", "id": "7745706", "url": "https://pubmed.ncbi.nlm.nih.gov/7745706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13148-1", "protein_name": "TAR DNA-binding protein 43", "gene_name": "TARDBP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13148", "url": "https://www.uniprot.org/uniprotkb/Q13148" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7745706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P17302-1", "protein_name": "Gap junction alpha-1 protein", "gene_name": "GJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Steady-state kinetic mechanism of bovine brain tubulin: tyrosine ligase.", "journal": "The Biochemical journal", "date": "1992", "authors": "Deans NL, Allison RD, Purich DL", "reference": { "type": "PubMed", "id": "1520276", "url": "https://pubmed.ncbi.nlm.nih.gov/1520276" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1520276", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 46 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Presence of functional gap junctions in human embryonic stem cells.", "journal": "Stem cells (Dayton, Ohio)", "date": "2004", "authors": "Wong RC, Pebay A, Nguyen LT, Koh KL, Pera MF", "reference": { "type": "PubMed", "id": "15536180", "url": "https://pubmed.ncbi.nlm.nih.gov/15536180" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08034-1", "protein_name": "Gap junction beta-1 protein", "gene_name": "GJB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY0-1", "protein_name": "Gap junction beta-7 protein", "gene_name": "GJB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95377-1", "protein_name": "Gap junction beta-5 protein", "gene_name": "GJB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95452-1", "protein_name": "Gap junction beta-6 protein", "gene_name": "GJB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969M2-1", "protein_name": "Gap junction alpha-10 protein", "gene_name": "GJA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T442-1", "protein_name": "Gap junction gamma-2 protein", "gene_name": "GJC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N144-1", "protein_name": "Gap junction delta-3 protein", "gene_name": "GJD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17302-1", "protein_name": "Gap junction alpha-1 protein", "gene_name": "GJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57773-1", "protein_name": "Gap junction alpha-9 protein", "gene_name": "GJA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTQ9-1", "protein_name": "Gap junction beta-4 protein", "gene_name": "GJB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36382-1", "protein_name": "Gap junction alpha-5 protein", "gene_name": "GJA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36383-1", "protein_name": "Gap junction gamma-1 protein", "gene_name": "GJC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75712-1", "protein_name": "Gap junction beta-3 protein", "gene_name": "GJB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48165-1", "protein_name": "Gap junction alpha-8 protein", "gene_name": "GJA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KN9-1", "protein_name": "Gap junction delta-4 protein", "gene_name": "GJD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL4-1", "protein_name": "Gap junction delta-2 protein", "gene_name": "GJD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H8-1", "protein_name": "Gap junction alpha-3 protein", "gene_name": "GJA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29033-1", "protein_name": "Gap junction beta-2 protein", "gene_name": "GJB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35212-1", "protein_name": "Gap junction alpha-4 protein", "gene_name": "GJA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15536180", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TTLL7 is a mammalian beta-tubulin polyglutamylase required for growth of MAP2-positive neurites.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Ikegami K, Mukai M, Tsuchida J, Heier RL, Macgregor GR, Setou M", "reference": { "type": "PubMed", "id": "16901895", "url": "https://pubmed.ncbi.nlm.nih.gov/16901895" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9F0-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "Ttll7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "M0RBT9-1", "protein_name": "Tubulin tyrosine ligase like 7", "gene_name": "Ttll7", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 349, "end_pos": 349, "sequence_org": "E", "sequence_mut": "V", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "A4Q9F0", "url": "https://www.uniprot.org/uniprotkb/A4Q9F0" }, { "database": "PubMed", "id": "16901895", "url": "https://pubmed.ncbi.nlm.nih.gov/16901895" } ], "uniprot_canonical_ac": "A4Q9F0-1" } ], "record_id": "pubmed.16901895", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Microtubule acetylation promotes kinesin-1 binding and transport.", "journal": "Current biology : CB", "date": "2006", "authors": "Reed NA, Cai D, Blasius TL, Jih GT, Meyhofer E, Gaertig J, Verhey KJ", "reference": { "type": "PubMed", "id": "17084703", "url": "https://pubmed.ncbi.nlm.nih.gov/17084703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBN7-1", "protein_name": "Protein deacetylase HDAC6", "gene_name": "HDAC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", 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"uniprot_canonical_ac": "Q9UKL4-1", "protein_name": "Gap junction delta-2 protein", "gene_name": "GJD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H8-1", "protein_name": "Gap junction alpha-3 protein", "gene_name": "GJA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29033-1", "protein_name": "Gap junction beta-2 protein", "gene_name": "GJB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35212-1", "protein_name": "Gap junction alpha-4 protein", "gene_name": "GJA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", 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Lorenzo J, Tanco S, Diez A, Fricker LD, Bautista JM, Aviles FX", "reference": { "type": "PubMed", "id": "17244817", "url": "https://pubmed.ncbi.nlm.nih.gov/17244817" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich 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"Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17244817", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 46 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel subfamily of mouse cytosolic carboxypeptidases.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2007", "authors": "Kalinina E, Biswas R, Berezniuk I, Hermoso A, Aviles FX, Fricker LD", "reference": { "type": "PubMed", "id": "17244818", "url": "https://pubmed.ncbi.nlm.nih.gov/17244818" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CDK2-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "Agbl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q09M02-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "Agbl5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09LZ8-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "Agbl4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDP0-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "Agbl3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q09M05-4", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "Agbl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17244818", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 51 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of alpha-tubulin polyglutamylation in ROSA22 mice is associated with abnormal targeting of KIF1A and modulated synaptic function.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007", "authors": "Ikegami K, Heier RL, Taruishi M, Takagi H, Mukai M, Shimma S, Taira S, Hatanaka K, Morone N, Yao I, Campbell PK, Yuasa S, Janke C, Macgregor GR, Setou M", "reference": { "type": "PubMed", "id": "17360631", "url": "https://pubmed.ncbi.nlm.nih.gov/17360631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99MS8-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "Tpgs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17360631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A targeted multienzyme mechanism for selective microtubule polyglutamylation.", "journal": "Molecular cell", "date": "2007", "authors": "van Dijk J, Rogowski K, Miro J, Lacroix B, Edde B, Janke C", "reference": { "type": "PubMed", "id": "17499049", "url": "https://pubmed.ncbi.nlm.nih.gov/17499049" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9F0-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "Ttll7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CHB8-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "Ttll5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9E8-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "Ttll6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q78ZA7-1", "protein_name": "Nucleosome assembly protein 1-like 4", "gene_name": "Nap1l4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9E4-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "Ttll2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9E5-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "Ttll3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9F1-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "Ttll8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UDE2-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "Ttll12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9F4-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "Ttll11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9F6-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "Ttll13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "A2APC3-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "Ttll9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9F3-1", "protein_name": "Protein polyglycylase TTLL10", "gene_name": "Ttll10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91V51-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "Ttll1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28656-1", "protein_name": "Nucleosome assembly protein 1-like 1", "gene_name": "Nap1l1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80UG8-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "Ttll4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17499049", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 61 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2007", "authors": "Mishima Masaki, Maesaki Ryoko, Kasa Miyuki, Watanabe Takashi, Fukata Masaki, Kaibuchi Kozo, Hakoshima Toshio", "reference": { "type": "PubMed", "id": "17563362", "url": "https://pubmed.ncbi.nlm.nih.gov/17563362" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30622-3", "protein_name": "CAP-Gly domain-containing linker protein 1", "gene_name": "CLIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY8-1", "protein_name": "Microtubule-associated protein RP/EB family member 3", "gene_name": "MAPRE3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17563362", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mice lacking histone deacetylase 6 have hyperacetylated tubulin but are viable and develop normally.", "journal": "Molecular and cellular biology", "date": "2008", "authors": "Zhang Y, Kwon S, Yamaguchi T, Cubizolles F, Rousseaux S, Kneissel M, Cao C, Li N, Cheng HL, Chua K, Lombard D, Mizeracki A, Matthias G, Alt FW, Khochbin S, Matthias P", "reference": { "type": "PubMed", "id": "18180281", "url": "https://pubmed.ncbi.nlm.nih.gov/18180281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "TTLL10 is a protein polyglycylase that can modify nucleosome assembly protein 1.", "journal": "FEBS letters", "date": "2008", "authors": "Ikegami K, Horigome D, Mukai M, Livnat I, MacGregor GR, Setou M", "reference": { "type": "PubMed", "id": "18331838", "url": "https://pubmed.ncbi.nlm.nih.gov/18331838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9F3-1", "protein_name": "Protein polyglycylase TTLL10", "gene_name": "Ttll10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28656-1", "protein_name": "Nucleosome assembly protein 1-like 1", "gene_name": "Nap1l1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 499, "end_pos": 499, "sequence_org": "E", "sequence_mut": "V", "comment": "Loss of NAP1 polyglycylase activity.", "evidence": [ { "database": "UniProtKB", "id": "A4Q9F3", "url": "https://www.uniprot.org/uniprotkb/A4Q9F3" }, { "database": "PubMed", "id": "18331838", "url": "https://pubmed.ncbi.nlm.nih.gov/18331838" } ], "uniprot_canonical_ac": "A4Q9F3-1" }, { "start_pos": 359, "end_pos": 359, "sequence_org": "E", "sequence_mut": "D", "comment": "Reduced polyglycylation.", "evidence": [ { "database": "UniProtKB", "id": "P28656", "url": "https://www.uniprot.org/uniprotkb/P28656" }, { "database": "PubMed", "id": "18331838", "url": "https://pubmed.ncbi.nlm.nih.gov/18331838" } ], "uniprot_canonical_ac": "P28656-1" }, { "start_pos": 360, "end_pos": 360, "sequence_org": "E", "sequence_mut": "D", "comment": "Reduced polyglycylation.", "evidence": [ { "database": "UniProtKB", "id": "P28656", "url": "https://www.uniprot.org/uniprotkb/P28656" }, { "database": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of human cardiac gap junction channel mutants.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1991", "authors": "Fishman GI, Moreno AP, Spray DC, Leinwand LA", "reference": { "type": "PubMed", "id": "1850831", "url": "https://pubmed.ncbi.nlm.nih.gov/1850831" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08034-1", "protein_name": "Gap junction beta-1 protein", "gene_name": "GJB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY0-1", "protein_name": "Gap junction beta-7 protein", "gene_name": "GJB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95377-1", "protein_name": "Gap junction beta-5 protein", "gene_name": "GJB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95452-1", "protein_name": "Gap junction beta-6 protein", "gene_name": "GJB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969M2-1", "protein_name": "Gap junction alpha-10 protein", "gene_name": "GJA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T442-1", "protein_name": "Gap junction gamma-2 protein", "gene_name": "GJC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N144-1", "protein_name": "Gap junction delta-3 protein", "gene_name": "GJD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17302-1", "protein_name": "Gap junction alpha-1 protein", "gene_name": "GJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57773-1", "protein_name": "Gap junction alpha-9 protein", "gene_name": "GJA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTQ9-1", "protein_name": "Gap junction beta-4 protein", "gene_name": "GJB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36382-1", "protein_name": "Gap junction alpha-5 protein", "gene_name": "GJA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36383-1", "protein_name": "Gap junction gamma-1 protein", "gene_name": "GJC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75712-1", "protein_name": "Gap junction beta-3 protein", "gene_name": "GJB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48165-1", "protein_name": "Gap junction alpha-8 protein", "gene_name": "GJA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KN9-1", "protein_name": "Gap junction delta-4 protein", "gene_name": "GJD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL4-1", "protein_name": "Gap junction delta-2 protein", "gene_name": "GJD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H8-1", "protein_name": "Gap junction alpha-3 protein", "gene_name": "GJA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29033-1", "protein_name": "Gap junction beta-2 protein", "gene_name": "GJB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35212-1", "protein_name": "Gap junction alpha-4 protein", "gene_name": "GJA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1850831", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VM91-1", "protein_name": "Tubulin glycylase 3A", "gene_name": "TTLL3A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VM92-1", "protein_name": "Tubulin glycylase 3B", "gene_name": "TTLL3B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19351-1", "protein_name": "Troponin T, skeletal muscle", "gene_name": 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"gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68368-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "Tuba4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05213-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "Tuba1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68373-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "Tuba1c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P99024-1", "protein_name": "Tubulin beta-5 chain", "gene_name": "Tubb5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05214-1", "protein_name": "Tubulin alpha-3 chain", "gene_name": "Tuba3a; Tuba3b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68369-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "Tuba1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERD7-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "Tubb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9F3-1", "protein_name": "Protein polyglycylase TTLL10", "gene_name": "Ttll10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7TMM9-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "Tubb2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q922F4-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "Tubb6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D6F9-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "Tubb4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJZ2-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "Tuba8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P09405-1", "protein_name": "Nucleolin", "gene_name": "Ncl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "A2AQ07-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "Tubb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68372-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "Tubb4b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWF2-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "Tubb2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EQU5-1", "protein_name": "Protein SET", "gene_name": "Set", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": 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"2009", "authors": "Wloga D, Webster DM, Rogowski K, Bre MH, Levilliers N, Jerka-Dziadosz M, Janke C, Dougan ST, Gaertig J", "reference": { "type": "PubMed", "id": "19531357", "url": "https://pubmed.ncbi.nlm.nih.gov/19531357" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": 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}, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of tubulin deglutamylase among Caenorhabditis elegans and mammalian cytosolic carboxypeptidases (CCPs).", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Kimura Y, Kurabe N, Ikegami K, Tsutsumi K, Konishi Y, Kaplan OI, Kunitomo H, Iino Y, Blacque OE, Setou M", "reference": { "type": "PubMed", "id": "20519502", "url": "https://pubmed.ncbi.nlm.nih.gov/20519502" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09M02-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "Agbl5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20519502", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The conserved Bardet-Biedl syndrome proteins assemble a coat that traffics membrane proteins to cilia.", "journal": "Cell", "date": "2010", "authors": "Jin H, White SR, Shida T, Schulz S, Aguiar M, Gygi SP, Bazan JF, Nachury MV", "reference": { "type": "PubMed", "id": "20603001", "url": "https://pubmed.ncbi.nlm.nih.gov/20603001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0IIM2-1", "protein_name": "ADP-ribosylation factor-like protein 6", "gene_name": "ARL6", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P49368-1", "protein_name": "T-complex protein 1 subunit gamma", "gene_name": "CCT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50991-1", "protein_name": "T-complex protein 1 subunit delta", "gene_name": "CCT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32745-1", "protein_name": "Somatostatin receptor type 3", "gene_name": "SSTR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99835-1", "protein_name": "Protein smoothened", "gene_name": "SMO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SYG4-1", "protein_name": "Protein PTHB1", "gene_name": "BBS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3I7-1", "protein_name": "BBSome complex member BBS5", "gene_name": "BBS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0F7-1", "protein_name": "ADP-ribosylation factor-like protein 6", "gene_name": "ARL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBN7-1", "protein_name": "Protein deacetylase HDAC6", "gene_name": "HDAC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAM2-1", "protein_name": "Tetratricopeptide repeat protein 8", "gene_name": "TTC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17987-1", "protein_name": "T-complex protein 1 subunit alpha", "gene_name": "TCP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QF0-1", "protein_name": "Rab-3A-interacting protein", "gene_name": "RAB3IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFJ9-1", "protein_name": "BBSome complex member BBS1", "gene_name": "BBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ6-1", "protein_name": "BBSome complex member BBS7", "gene_name": "BBS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RK4-1", "protein_name": "BBSome complex member BBS4", "gene_name": "BBS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXC9-1", "protein_name": "BBSome complex member BBS2", "gene_name": "BBS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SQI0-1", "protein_name": "Alpha-tubulin N-acetyltransferase 1", "gene_name": "ATAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAM1-1", "protein_name": "BBSome complex assembly protein BBS10", "gene_name": "BBS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZW61-1", "protein_name": "Chaperonin-containing T-complex member BBS12", "gene_name": "BBS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MTZ0-1", "protein_name": "BBSome-interacting protein 1", "gene_name": "BBIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78371-1", "protein_name": "T-complex protein 1 subunit beta", "gene_name": "CCT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ1-1", "protein_name": "Molecular chaperone MKKS", "gene_name": "MKKS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48643-1", "protein_name": "T-complex protein 1 subunit epsilon", "gene_name": "CCT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQ48-1", "protein_name": "Leucine zipper transcription factor-like protein 1", "gene_name": "LZTFL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99705-1", "protein_name": "Melanin-concentrating hormone receptor 1", "gene_name": "MCHR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50990-1", "protein_name": "T-complex protein 1 subunit theta", "gene_name": "CCT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20603001", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "alphaTAT1 catalyses microtubule acetylation at clathrin-coated pits.", "journal": "Nature", "date": "2013", "authors": "Montagnac G, Meas-Yedid V, Irondelle M, Castro-Castro A, Franco M, Shida T, Nachury MV, Benmerah A, Olivo-Marin JC, Chavrier P", "reference": { "type": "PubMed", "id": "24097348", "url": "https://pubmed.ncbi.nlm.nih.gov/24097348" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", 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"gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94973-1", "protein_name": "AP-2 complex subunit alpha-2", "gene_name": "AP2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8K341-1", "protein_name": "Alpha-tubulin N-acetyltransferase 1", "gene_name": "Atat1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", 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"protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6PVC2-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "TTLL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Writing and Reading the Tubulin Code.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Yu I, Garnham CP, Roll-Mecak A", "reference": { "type": "PubMed", "id": "25957412", "url": "https://pubmed.ncbi.nlm.nih.gov/25957412" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": 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}, { "uniprot_canonical_ac": "O95922-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "TTLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZTW0-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG68-1", "protein_name": "Tubulin--tyrosine ligase", "gene_name": "TTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V25-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 2", "gene_name": "VASH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT98-1", "protein_name": "Tubulin polyglutamylase TTLL7", "gene_name": "TTLL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25957412", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 46 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomic Profiling and Functional Characterization of Multiple Post-Translational Modifications of Tubulin.", "journal": "Journal of proteome 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No effect on CDK2-dependent phosphorylation. Does not inhibit interaction with alpha-tubulin, HDAC6, HIF1A and the cyclin E-CDK2 complex. Inhibits interaction with BEX4 and KMT5A. Abolishes deacetylation, dimeric formation and enzymatic activity increase of G6PD. Prevents histone H4 methylation at 'Lys-20'(H4K20me1) in metaphase chromosomes. Inhibits the block of entry to chromosome condensation and subsequent hyperploidy cell formation in response to mitotic stress; when associated with A-167 and A-168. Strongly reduced activity toward long-chain fatty acyl groups.", "evidence": [ { "database": "UniProtKB", "id": "Q8IXJ6", "url": "https://www.uniprot.org/uniprotkb/Q8IXJ6" }, { "database": "PubMed", "id": "24681946", "url": "https://pubmed.ncbi.nlm.nih.gov/24681946" }, { "database": "PubMed", "id": "17516032", "url": "https://pubmed.ncbi.nlm.nih.gov/17516032" }, { "database": "PubMed", "id": "10381378", "url": "https://pubmed.ncbi.nlm.nih.gov/10381378" }, { "database": "PubMed", "id": "17726514", "url": "https://pubmed.ncbi.nlm.nih.gov/17726514" }, { "database": "PubMed", "id": "22014574", "url": "https://pubmed.ncbi.nlm.nih.gov/22014574" }, { "database": "PubMed", "id": "11427894", "url": "https://pubmed.ncbi.nlm.nih.gov/11427894" }, { "database": "PubMed", "id": "16909107", "url": "https://pubmed.ncbi.nlm.nih.gov/16909107" }, { "database": "PubMed", "id": "27512957", "url": "https://pubmed.ncbi.nlm.nih.gov/27512957" }, { "database": "PubMed", "id": "12620231", "url": "https://pubmed.ncbi.nlm.nih.gov/12620231" }, { "database": "PubMed", "id": "29239724", "url": "https://pubmed.ncbi.nlm.nih.gov/29239724" }, { "database": "PubMed", "id": "11812793", "url": "https://pubmed.ncbi.nlm.nih.gov/11812793" }, { "database": "PubMed", "id": "17488717", "url": "https://pubmed.ncbi.nlm.nih.gov/17488717" }, { "database": "PubMed", "id": "12697818", "url": "https://pubmed.ncbi.nlm.nih.gov/12697818" } ], "uniprot_canonical_ac": "Q8IXJ6-1" }, { "start_pos": 187, "end_pos": 187, "sequence_org": "H", "sequence_mut": "Y", "comment": "Inhibits deacetylase activity toward histone, alpha-tubulin, FZR1 and CDC20. No effect on CDK2-dependent phosphorylation. Does not inhibit interaction with alpha-tubulin, HDAC6, HIF1A and the cyclin E-CDK2 complex. Inhibits interaction with BEX4 and KMT5A. Abolishes deacetylation, dimeric formation and enzymatic activity increase of G6PD. Prevents histone H4 methylation at 'Lys-20'(H4K20me1) in metaphase chromosomes. Inhibits the block of entry to chromosome condensation and subsequent hyperploidy cell formation in response to mitotic stress; when associated with A-167 and A-168. Strongly reduced activity toward long-chain fatty acyl groups.", "evidence": [ { "database": "UniProtKB", "id": "Q8IXJ6", "url": "https://www.uniprot.org/uniprotkb/Q8IXJ6" }, { "database": "PubMed", "id": "24681946", "url": "https://pubmed.ncbi.nlm.nih.gov/24681946" }, { "database": "PubMed", "id": "17516032", "url": "https://pubmed.ncbi.nlm.nih.gov/17516032" }, { "database": "PubMed", "id": "10381378", "url": "https://pubmed.ncbi.nlm.nih.gov/10381378" }, { "database": "PubMed", "id": "17726514", "url": "https://pubmed.ncbi.nlm.nih.gov/17726514" }, { "database": "PubMed", "id": "22014574", "url": "https://pubmed.ncbi.nlm.nih.gov/22014574" }, { "database": "PubMed", "id": "11427894", "url": "https://pubmed.ncbi.nlm.nih.gov/11427894" }, { "database": "PubMed", "id": "16909107", "url": "https://pubmed.ncbi.nlm.nih.gov/16909107" }, { "database": "PubMed", "id": "27512957", "url": "https://pubmed.ncbi.nlm.nih.gov/27512957" }, { "database": "PubMed", "id": "12620231", "url": 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[] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "E9Q5F9-1", "protein_name": "Histone-lysine N-methyltransferase SETD2", "gene_name": "Setd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYW2-1", "protein_name": "Histone-lysine N-methyltransferase SETD2", "gene_name": "SETD2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27518565", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vasohibins/SVBP are tubulin carboxypeptidases (TCPs) that regulate neuron differentiation.", "journal": "Science (New York, N.Y.)", "date": "2017", "authors": "Aillaud C, Bosc C, Peris L, Bosson A, Heemeryck P, Van Dijk J, Le Friec J, Boulan B, Vossier F, Sanman LE, Syed S, Amara N, Coute Y, Lafanechere L, Denarier E, Delphin C, Pelletier L, Humbert S, Bogyo M, Andrieux A, Rogowski K, Moutin MJ", "reference": { "type": "PubMed", "id": "29146868", "url": "https://pubmed.ncbi.nlm.nih.gov/29146868" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH3-1", "protein_name": "Nicolin-1", "gene_name": "NICN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVT0-1", "protein_name": "Inactive polyglycylase TTLL10", "gene_name": "TTLL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L8A9-1", "protein_name": "Tubulinyl-Tyr carboxypeptidase 1", "gene_name": "VASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDL9-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "AGBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5U5Z8-1", "protein_name": "Cytosolic carboxypeptidase 2", "gene_name": "AGBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MI9-1", "protein_name": "Cytosolic carboxypeptidase 4", "gene_name": "AGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VU57-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "AGBL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW5-1", "protein_name": "Cytosolic carboxypeptidase 1", "gene_name": "AGTPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DPH7-1" } ], "record_id": "pubmed.30796923", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 46 }, { "field": "total_sites", "count": 46 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 46 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 46 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 40 }, { "field": "exact_o_linked_sites", "count": 40 }, { "field": "exact_o_linked_glycan_sites", "count": 40 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 6 }, { "field": "fuzzy_o_linked_sites", "count": 6 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 6 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HLA-F*01:01 presents peptides with N-terminal flexibility and a preferred length of 16 residues.", "journal": "Immunogenetics", "date": "2019-05", "authors": "H\u00f2 Gia-Gia T, Heinen Funmilola J, Huyton Trevor, Blasczyk Rainer, Bade-D\u00f6ding Christina", "reference": { "type": "PubMed", "id": "30941482", "url": "https://pubmed.ncbi.nlm.nih.gov/30941482" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62937-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A", "gene_name": "PPIA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13929-1", "protein_name": "Beta-enolase", "gene_name": "ENO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63104-1", "protein_name": "14-3-3 protein zeta/delta", "gene_name": "YWHAZ", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30941482", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TTC5 mediates autoregulation of tubulin via mRNA degradation.", "journal": "Science", "date": "2020", "authors": "Lin Z, Gasic I, Chandrasekaran V, Peters N, Shao S, Mitchison TJ, Hegde RS", "reference": { "type": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N0Z6-1", "protein_name": "Tetratricopeptide 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Loss of interaction with 28S rRNA of ribosome-coding tubulin. Loss of tubulin autoregulation and accurate mitosis.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" }, { "start_pos": 225, "end_pos": 225, "sequence_org": "D", "sequence_mut": "A", "comment": "Partial loss of interaction with N-terminal MREI motif of beta-tubulin nascent chain. Loss of interaction with N-terminal MREI motif of beta-tubulin nascent chain; when associated with A-259.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" }, { "start_pos": 254, "end_pos": 254, "sequence_org": "D", "sequence_mut": "A", "comment": "No change in interaction with 28S rRNA of ribosome-coding tubulin.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" }, { "start_pos": 259, "end_pos": 259, "sequence_org": "E", "sequence_mut": "A", "comment": "Partial loss of interaction with N-terminal MREI motif of beta-tubulin nascent chain. Loss of interaction with N-terminal MREI motif of beta-tubulin nascent chain; when associated with D-225.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" }, { "start_pos": 285, "end_pos": 285, "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of interaction with 28S rRNA of ribosome-coding tubulin, when associated with E-287. No change in interaction with N-terminal MREI motif of beta-tubulin nascent chain, when associated with E-287. Loss of tubulin autoregulation and accurate mitosis, when associated with E-287.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" }, { "start_pos": 287, "end_pos": 287, "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of interaction with 28S rRNA of ribosome-coding tubulin, when associated with E-285. No change in interaction with N-terminal MREI motif of beta-tubulin nascent chain, when associated with E-285. Loss of tubulin autoregulation and accurate mitosis, when associated with E-285.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" }, { "start_pos": 83, "end_pos": 83, "sequence_org": "D", "sequence_mut": "A", "comment": "No change in interaction with N-terminal MREI motif of beta-tubulin nascent chain.", "evidence": [ { "database": "UniProtKB", "id": "Q8N0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8N0Z6" }, { "database": "PubMed", "id": "31727855", "url": "https://pubmed.ncbi.nlm.nih.gov/31727855" } ], "uniprot_canonical_ac": "Q8N0Z6-1" } ], "record_id": "pubmed.31727855", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.", "journal": "Nature structural & molecular biology", "date": "2020", "authors": "Mahalingan KK, Keith Keenan E, Strickland M, Li Y, Liu Y, Ball HL, Tanner ME, Tjandra N, Roll-Mecak A", "reference": { "type": "PubMed", "id": "32747782", "url": "https://pubmed.ncbi.nlm.nih.gov/32747782" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9E8-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "Ttll6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 125, "end_pos": 125, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of alpha-tubulin alpha-elongation step of polyglutamylase activity.", "evidence": [ { "database": "UniProtKB", "id": "A4Q9E8", "url": "https://www.uniprot.org/uniprotkb/A4Q9E8" }, { "database": "PubMed", "id": "32747782", "url": "https://pubmed.ncbi.nlm.nih.gov/32747782" } ], "uniprot_canonical_ac": "A4Q9E8-1" }, { "start_pos": 174, "end_pos": 174, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of alpha-tubulin alpha-elongation step of polyglutamylase activity.", "evidence": [ { "database": "UniProtKB", "id": "A4Q9E8", "url": "https://www.uniprot.org/uniprotkb/A4Q9E8" }, { "database": "PubMed", "id": "32747782", "url": "https://pubmed.ncbi.nlm.nih.gov/32747782" } ], "uniprot_canonical_ac": "A4Q9E8-1" }, { "start_pos": 179, "end_pos": 179, "sequence_org": "C", "sequence_mut": "A", "comment": "Strong increase in alpha-tubulin initiation step of polyglutamylase activity; when associated with R-180 and I-362. 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Biol.", "date": "1983", "authors": "Cowan N J, Dobner P R, Fuchs E V, Cleveland D W", "reference": { "type": "PubMed", "id": "6646120", "url": "https://pubmed.ncbi.nlm.nih.gov/6646120" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6646120", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } 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"Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SXZ7-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "TTLL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMB2-1", "protein_name": "Tubulin polyglutamylase TTLL5", "gene_name": "TTLL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNM8-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "TTLL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHH1-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "TTLL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N300-1", "protein_name": "Small vasohibin-binding protein", "gene_name": "SVBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CL5-2", "protein_name": "Tubulin polyglutamylase complex subunit 2", "gene_name": "TPGS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14679-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "TTLL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4R7-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "TTLL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEM8-1", "protein_name": "Cytosolic carboxypeptidase 3", "gene_name": "AGBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUZ0-1", "protein_name": "Leucine-rich repeat-containing protein 49", "gene_name": "LRRC49", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { 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"Membrane insertion of gap junction connexins: polytopic channel forming membrane proteins.", "journal": "The Journal of cell biology", "date": "1994", "authors": "Falk MM, Kumar NM, Gilula NB", "reference": { "type": "PubMed", "id": "7929580", "url": "https://pubmed.ncbi.nlm.nih.gov/7929580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08034-1", "protein_name": "Gap junction beta-1 protein", "gene_name": "GJB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY0-1", "protein_name": "Gap junction beta-7 protein", "gene_name": "GJB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95377-1", "protein_name": "Gap junction beta-5 protein", "gene_name": "GJB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95452-1", "protein_name": "Gap junction beta-6 protein", "gene_name": "GJB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969M2-1", "protein_name": "Gap junction alpha-10 protein", "gene_name": "GJA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T442-1", "protein_name": "Gap junction gamma-2 protein", "gene_name": "GJC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N144-1", "protein_name": "Gap junction delta-3 protein", "gene_name": "GJD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17302-1", "protein_name": "Gap junction alpha-1 protein", "gene_name": "GJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57773-1", "protein_name": "Gap junction alpha-9 protein", "gene_name": "GJA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTQ9-1", "protein_name": "Gap junction beta-4 protein", "gene_name": "GJB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36382-1", "protein_name": "Gap junction alpha-5 protein", "gene_name": "GJA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36383-1", "protein_name": "Gap junction gamma-1 protein", "gene_name": "GJC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75712-1", "protein_name": "Gap junction beta-3 protein", "gene_name": "GJB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48165-1", "protein_name": "Gap junction alpha-8 protein", "gene_name": "GJA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KN9-1", "protein_name": "Gap junction delta-4 protein", "gene_name": "GJD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL4-1", "protein_name": "Gap junction delta-2 protein", "gene_name": "GJD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H8-1", "protein_name": "Gap junction alpha-3 protein", "gene_name": "GJA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29033-1", "protein_name": "Gap junction beta-2 protein", "gene_name": "GJB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35212-1", "protein_name": "Gap junction alpha-4 protein", "gene_name": "GJA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7929580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", 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Biophys. Res. Commun.", "date": "1996", "authors": "Baumann M H, Wisniewski T, Levy E, Plant G T, Ghiso J", "reference": { "type": "PubMed", "id": "8619814", "url": "https://pubmed.ncbi.nlm.nih.gov/8619814" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8619814", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The axonemal microtubules of the Chlamydomonas flagellum differ in tubulin isoform content.", "journal": "Journal of cell science", "date": "1998", "authors": "Johnson KA", "reference": { "type": "PubMed", "id": "9427680", "url": "https://pubmed.ncbi.nlm.nih.gov/9427680" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", 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"gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P68363", "url": "https://www.uniprot.org/uniprotkb/P68363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9427680", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Mengjie, Wang Bo, Liu Liwen, Chen Kun, Wu Yuanming", "reference": { "type": "PubMed", "id": "38362779", "url": "https://pubmed.ncbi.nlm.nih.gov/38362779" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AYQ3-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "Fars2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q99M01-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "Fars2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O95363", "url": "https://www.uniprot.org/uniprotkb/O95363" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38362779", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Haemost.", "date": "2000", "authors": "Rouhiainen A, Imai S, Rauvala H, Parkkinen J", "reference": { "type": "PubMed", "id": "11154118", "url": "https://pubmed.ncbi.nlm.nih.gov/11154118" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63159-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1l2; Hmgb1; LOC134483981", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P09429", "url": "https://www.uniprot.org/uniprotkb/P09429" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11154118", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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(Baltimore, Md. : 1950)", "date": "2005-06-15", "authors": "Dumitriu Ingrid E, Baruah Paramita, Valentinis Barbara, Voll Reinhard E, Herrmann Martin, Nawroth Peter P, Arnold Bernd, Bianchi Marco E, Manfredi Angelo A, Rovere-Querini Patrizia", "reference": { "type": "PubMed", "id": "15944249", "url": "https://pubmed.ncbi.nlm.nih.gov/15944249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P09429", "url": "https://www.uniprot.org/uniprotkb/P09429" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15944249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reconstitution of 5'-directed human mismatch repair in a purified system.", "journal": "Cell", "date": "2005", "authors": "Zhang Y, Yuan F, Presnell SR, Tian K, Gao Y, Tomkinson AE, Gu L, Li GM", "reference": { "type": "PubMed", "id": "16143102", "url": "https://pubmed.ncbi.nlm.nih.gov/16143102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU8-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "POLD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18858-1", "protein_name": "DNA ligase 1", "gene_name": "LIG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52701-1", "protein_name": "DNA mismatch repair protein Msh6", "gene_name": "MSH6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15054-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ84-1", "protein_name": "Exonuclease 1", "gene_name": "EXO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20585-1", "protein_name": "DNA mismatch repair protein Msh3", "gene_name": "MSH3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43246-1", "protein_name": "DNA mismatch repair protein Msh2", "gene_name": "MSH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54278-1", "protein_name": "Mismatch repair endonuclease PMS2", "gene_name": "PMS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40692-1", "protein_name": "DNA 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Abolishes cytokine-stimulating activity and no effect on chemoattractant activity; when associated with S-23.", "evidence": [ { "database": "UniProtKB", "id": "P63159", "url": "https://www.uniprot.org/uniprotkb/P63159" }, { "database": "PubMed", "id": "22869893", "url": "https://pubmed.ncbi.nlm.nih.gov/22869893" }, { "database": "PubMed", "id": "20819940", "url": "https://pubmed.ncbi.nlm.nih.gov/20819940" }, { "database": "PubMed", "id": "16962095", "url": "https://pubmed.ncbi.nlm.nih.gov/16962095" } ], "uniprot_canonical_ac": "P63159-1" } ], "record_id": "pubmed.16962095", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The genetic variation of the human HMGB1 gene.", "journal": "Tissue Antigens", "date": "2007", "authors": "Kornblit B, Munthe-Fog L, Petersen S L, Madsen H O, Vindel\u00f8v L, Garred P", "reference": { "type": "PubMed", "id": "17610420", "url": "https://pubmed.ncbi.nlm.nih.gov/17610420" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P09429", "url": "https://www.uniprot.org/uniprotkb/P09429" } ], "common_name": "Human", 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