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"Usp14 deficiency removes \u03b1-synuclein by regulating S100A8/A9 in Parkinson's disease.", "journal": "Cellular and molecular life sciences : CMLS", "date": "2024-05-23", "authors": "Ding Liuyan, Lu Lin, Zheng Shaohui, Zhang Zhiling, Huang Xingting, Ma Runfang, Zhang Mengran, Xu Zongtang, Chen Minshan, Guo Zhimei, Zhu Si, Gong Junwei, Mao Hengxu, Zhang Wenlong, Xu Pingyi", "reference": { "type": "PubMed", "id": "38780644", "url": "https://pubmed.ncbi.nlm.nih.gov/38780644" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06702-1", "protein_name": "Protein S100-A9", "gene_name": "S100A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54578-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 14", "gene_name": "USP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JMA1-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 14", "gene_name": "Usp14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05109-1", "protein_name": "Protein 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Capnocytophaga sputigena.", "journal": "Journal of dental research", "date": "1993-02", "authors": "Miyasaki K T, Bodeau A L, Murthy A R, Lehrer R I", "reference": { "type": "PubMed", "id": "8423249", "url": "https://pubmed.ncbi.nlm.nih.gov/8423249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06702-1", "protein_name": "Protein S100-A9", "gene_name": "S100A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05109-1", "protein_name": "Protein S100-A8", "gene_name": "S100A8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P06702", "url": "https://www.uniprot.org/uniprotkb/P06702" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8423249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Chem.", "date": "1997", "authors": "Rammes A, Roth J, Goebeler M, Klempt M, Hartmann M, Sorg C", "reference": { "type": "PubMed", "id": "9083090", "url": "https://pubmed.ncbi.nlm.nih.gov/9083090" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06702-1", "protein_name": "Protein S100-A9", "gene_name": "S100A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05109-1", "protein_name": "Protein S100-A8", "gene_name": "S100A8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P06702", "url": "https://www.uniprot.org/uniprotkb/P06702" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9083090", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Liprin beta 1, a member of the family of LAR transmembrane tyrosine phosphatase-interacting proteins, is a new target for the metastasis-associated protein S100A4 (Mts1).", "journal": "J. Biol. Chem.", "date": "2002", "authors": "Kriajevska M, Fischer-Larsen M, Moertz E, Vorm O, Tulchinsky E, Grigorian M, Ambartsumian N, Lukanidin E", "reference": { "type": "PubMed", "id": "11836260", "url": "https://pubmed.ncbi.nlm.nih.gov/11836260" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26447-1", "protein_name": "Protein S100-A4", "gene_name": "S100A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W92-1", "protein_name": "Liprin-beta-1", "gene_name": "PPFIBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8C8U0-1", "protein_name": "Liprin-beta-1", "gene_name": "Ppfibp1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P26447", "url": "https://www.uniprot.org/uniprotkb/P26447" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11836260", "abstract": "", "glycosylation": [], "mutagenesis": 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retardation along with neutropenia and NK cell deficiency.", "journal": "The Journal of clinical investigation", "date": "2017", "authors": "Cottineau J, Kottemann MC, Lach FP, Kang YH, Vely F, Deenick EK, Lazarov T, Gineau L, Wang Y, Farina A, Chansel M, Lorenzo L, Piperoglou C, Ma CS, Nitschke P, Belkadi A, Itan Y, Boisson B, Jabot-Hanin F, Picard C, Bustamante J, Eidenschenk C, Boucherit S, Aladjidi N, Lacombe D, Barat P, Qasim W, Hurst JA, Pollard AJ, Uhlig HH, Fieschi C, Michon J, Bermudez VP, Abel L, de Villartay JP, Geissmann F, Tangye SG, Hurwitz J, Vivier E, Casanova JL, Smogorzewska A, Jouanguy E", "reference": { "type": "PubMed", "id": "28414293", "url": "https://pubmed.ncbi.nlm.nih.gov/28414293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BRT9-1", "protein_name": "DNA replication complex GINS protein SLD5", "gene_name": "GINS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14691-1", "protein_name": "DNA replication complex GINS 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"authors": "Conte Matilde I, Poli M Cecilia, Taglialatela Angelo, Leuzzi Giuseppe, Chinn Ivan K, Salinas Sandra A, Rey-Jurado Emma, Olivares Nixa, Veramendi-Espinoza Liz, Ciccia Alberto, Lupski James R, Aldave Becerra Juan Carlos, Mace Emily M, Orange Jordan S", "reference": { "type": "PubMed", "id": "36345943", "url": "https://pubmed.ncbi.nlm.nih.gov/36345943" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BRT9-1", "protein_name": "DNA replication complex GINS protein SLD5", "gene_name": "GINS4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BRT9", "url": "https://www.uniprot.org/uniprotkb/Q9BRT9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36345943", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[] } ] }, { "title": "Molecular cloning and characterization of a conserved nuclear serine(threonine) protein kinase.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1995", "authors": "Millward T, Cron P, Hemmings BA", "reference": { "type": "PubMed", "id": "7761441", "url": "https://pubmed.ncbi.nlm.nih.gov/7761441" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15208-1", "protein_name": "Serine/threonine-protein kinase 38", "gene_name": "STK38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NBK5-1", "protein_name": "Serine/threonine-protein kinase tricornered", "gene_name": "trc", "tax_name": "Fruit fly" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15208", "url": "https://www.uniprot.org/uniprotkb/Q15208" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { 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Cell Genet.", "date": "1996", "authors": "de Leeuw B, Balemans M, Geurts van Kessel A", "reference": { "type": "PubMed", "id": "8697803", "url": "https://pubmed.ncbi.nlm.nih.gov/8697803" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99909-1", "protein_name": "Protein SSX3", "gene_name": "SSX3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q99909", "url": "https://www.uniprot.org/uniprotkb/Q99909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8697803", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SSX: a multigene family with several members transcribed in normal testis and human cancer.", "journal": "Int. J. Cancer", "date": "1997", "authors": "Gure A O, T\u00fcreci O, Sahin U, Tsang S, Scanlan M J, J\u00e4ger E, Knuth A, Pfreundschuh M, Old L J, Chen Y T", "reference": { "type": "PubMed", "id": "9378559", "url": "https://pubmed.ncbi.nlm.nih.gov/9378559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99909-1", "protein_name": "Protein SSX3", "gene_name": "SSX3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60225-1", "protein_name": "Protein SSX5", "gene_name": "SSX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60224-1", "protein_name": "Protein SSX4", "gene_name": "SSX4B; SSX4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q99909", "url": "https://www.uniprot.org/uniprotkb/Q99909" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9378559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of HEPP, a novel gene expressed preferentially in hematopoietic progenitors and mature blood cells.", "journal": "Blood Cells Mol. Dis.", "date": "2001", "authors": "Abdullah JM, Jing X, Spassov DS, Nachtman RG, Jurecic R", "reference": { "type": "PubMed", "id": "11482882", "url": "https://pubmed.ncbi.nlm.nih.gov/11482882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BXL8-1", "protein_name": "Cell division cycle-associated protein 4", "gene_name": "CDCA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9CWM2-1", "protein_name": "Cell division cycle-associated protein 4", "gene_name": "Cdca4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BXL8", "url": "https://www.uniprot.org/uniprotkb/Q9BXL8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11482882", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Repression of transcriptional activity of C/EBPalpha by E2F-dimerization partner complexes.", "journal": "Molecular and cellular biology", "date": "2010", "authors": "Zaragoza K, Begay V, Schuetz A, Heinemann U, Leutz A", "reference": { "type": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01094-1", "protein_name": "Transcription factor E2F1", "gene_name": "E2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O09139-1", "protein_name": "Transcription factor E2F1", "gene_name": "E2f1; Necab3", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q08639-1", "protein_name": "Transcription factor Dp-1", "gene_name": "Tfdp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49715-1", "protein_name": "CCAAT/enhancer-binding protein alpha", "gene_name": "CEBPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O35261-1", "protein_name": "Transcription factor E2F3", "gene_name": "E2f3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05554-1", "protein_name": "CCAAT/enhancer-binding protein alpha", "gene_name": "Cebpa", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q14188-1", "protein_name": "Transcription factor Dp-2", "gene_name": "TFDP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14186-1", "protein_name": "Transcription factor Dp-1", "gene_name": "TFDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q61501-1", "protein_name": "Transcription factor E2F1", "gene_name": "E2f1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 132, "end_pos": 132, "sequence_org": "L", "sequence_mut": "E", "comment": "Abolishes interaction with and repression of CEBPA and inhibition of adipogenesis.", "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" } ], "uniprot_canonical_ac": "Q01094-1" }, { "start_pos": 411, "end_pos": 411, "sequence_org": "Y", "sequence_mut": "C", "comment": "No retinoblastoma protein binding. No effect on interaction with and repression of CEBPA.", "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" }, { "database": "PubMed", "id": "8413249", "url": "https://pubmed.ncbi.nlm.nih.gov/8413249" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" } ], "uniprot_canonical_ac": "Q01094-1" }, { "start_pos": 285, "end_pos": 285, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increases interaction with TFDP1 and TFDP2, reduces DNA-binding, transactivation activity and represses E2F1:TFDP1-mediated transcription, loss of cell cycle inhibition and adipogenesis induction.", "evidence": [ { "database": "UniProtKB", "id": "P05554", "url": "https://www.uniprot.org/uniprotkb/P05554" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" }, { "database": "PubMed", "id": "11672531", "url": "https://pubmed.ncbi.nlm.nih.gov/11672531" } ], "uniprot_canonical_ac": "P05554-1" }, { "start_pos": 294, "end_pos": 294, "sequence_org": "I", "sequence_mut": "A", "comment": "Increases interaction with TFDP1 and TFDP2, reduces transactivation activity and represses E2F1:TFDP1-mediated transcription, loss of cell cycle inhibition and adipogenesis induction, no effect on DNA-binding; when associated with A-297.", "evidence": [ { "database": "UniProtKB", "id": "P05554", "url": "https://www.uniprot.org/uniprotkb/P05554" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" }, { "database": "PubMed", "id": "11672531", "url": "https://pubmed.ncbi.nlm.nih.gov/11672531" } ], "uniprot_canonical_ac": "P05554-1" }, { "start_pos": 297, "end_pos": 297, "sequence_org": "R", "sequence_mut": "A", "comment": "Increases interaction with TFDP1 and TFDP2, reduces transactivation activity and represses E2F1:TFDP1-mediated transcription, loss of cell cycle inhibition and adipogenesis induction, no effect on DNA-binding; when associated with A-294.", "evidence": [ { "database": "UniProtKB", "id": "P05554", "url": "https://www.uniprot.org/uniprotkb/P05554" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" }, { "database": "PubMed", "id": "11672531", "url": "https://pubmed.ncbi.nlm.nih.gov/11672531" } ], "uniprot_canonical_ac": "P05554-1" }, { "start_pos": 301, "end_pos": 301, "sequence_org": "D", "sequence_mut": "A", "comment": "No effect neither on interaction with TFDP1 or TFDP2 nor on transactivation activity or repression of E2F1:TFDP1-mediated transcription, no effect on cell cycle inhibition or adipogenesis; when associated with A-304.", "evidence": [ { "database": "UniProtKB", "id": "P05554", "url": "https://www.uniprot.org/uniprotkb/P05554" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" }, { "database": "PubMed", "id": "11672531", "url": "https://pubmed.ncbi.nlm.nih.gov/11672531" } ], "uniprot_canonical_ac": "P05554-1" }, { "start_pos": 304, "end_pos": 304, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect neither on interaction with TFDP1 or TFDP2 nor on transactivation activity or repression of E2F1:TFDP1-mediated transcription, no effect on cell cycle inhibition or adipogenesis; when associated with A-301.", "evidence": [ { "database": "UniProtKB", "id": "P05554", "url": "https://www.uniprot.org/uniprotkb/P05554" }, { "database": "PubMed", "id": "20176812", "url": "https://pubmed.ncbi.nlm.nih.gov/20176812" }, { "database": "PubMed", "id": "11672531", "url": "https://pubmed.ncbi.nlm.nih.gov/11672531" } ], "uniprot_canonical_ac": "P05554-1" } ], "record_id": "pubmed.20176812", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Study of the in vivo phosphorylation of E2F1 on Ser403.", "journal": "Biochimica et biophysica acta", "date": "2010", "authors": "Real S, Espada L, Espinet C, Santidrian AF, Tauler A", "reference": { "type": "PubMed", "id": "20447425", "url": "https://pubmed.ncbi.nlm.nih.gov/20447425" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01094-1", "protein_name": "Transcription factor E2F1", "gene_name": "E2F1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 403, "end_pos": 403, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GSK3-beta", "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" }, { "database": "iPTMnet", "id": "Q01094", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01094" }, { "database": "PubMed", "id": "18794805", "url": "https://pubmed.ncbi.nlm.nih.gov/18794805" }, { "database": "PubMed", "id": "20447425", "url": "https://pubmed.ncbi.nlm.nih.gov/20447425" }, { "database": "PubMed", "id": "27903963", "url": "https://pubmed.ncbi.nlm.nih.gov/27903963" }, { "database": "PubMed", "id": "28992046", "url": "https://pubmed.ncbi.nlm.nih.gov/28992046" }, { "database": "PubMed", "id": "17050006", "url": "https://pubmed.ncbi.nlm.nih.gov/17050006" } ], "site_lbl": "Ser403", "uniprot_canonical_ac": "Q01094-1" } ], "record_id": "pubmed.20447425", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysine methylation regulates E2F1-induced cell death.", "journal": "Molecular cell", "date": "2010-07-09", "authors": "Kontaki Haroula, Talianidis Iannis", "reference": { "type": "PubMed", "id": "20603083", "url": "https://pubmed.ncbi.nlm.nih.gov/20603083" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01094-1", "protein_name": "Transcription factor E2F1", "gene_name": "E2F1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 185, "end_pos": 185, "sequence_org": "K", "sequence_mut": "R", "comment": "Abrogates methylation by SETD7. Loss of interaction with L3MBTL3. Loss of ubiquitination by the CRL4-DCAF5 E3 ubiquitin ligase complex.", "evidence": [ { "database": "UniProtKB", "id": "Q01094", "url": "https://www.uniprot.org/uniprotkb/Q01094" }, { "database": "PubMed", "id": "20603083", "url": "https://pubmed.ncbi.nlm.nih.gov/20603083" }, { "database": "PubMed", "id": "29691401", "url": "https://pubmed.ncbi.nlm.nih.gov/29691401" } ], "uniprot_canonical_ac": "Q01094-1" } ], "record_id": "pubmed.20603083", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]