[ { "title": "A nonclassical arabinogalactan protein gene highly expressed in vascular tissues, AGP31, is transcriptionally repressed by methyl jasmonic acid in Arabidopsis.", "journal": "Plant Physiol.", "date": "2007", "authors": "Liu Chenggang, Mehdy Mona C", "reference": { "type": "PubMed", "id": "17885091", "url": "https://pubmed.ncbi.nlm.nih.gov/17885091" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FZA2-1", "protein_name": "Non-classical arabinogalactan protein 31", "gene_name": "AGP31", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZA2", "url": "https://www.uniprot.org/uniprotkb/Q9FZA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17885091", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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C\u00e9cile", "reference": { "type": "PubMed", "id": "22270363", "url": "https://pubmed.ncbi.nlm.nih.gov/22270363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FZA2-1", "protein_name": "Non-classical arabinogalactan protein 31", "gene_name": "AGP31", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZA2", "url": "https://www.uniprot.org/uniprotkb/Q9FZA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22270363", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Pol.", "date": "2001", "authors": "Maceluch J, Kmieciak M, Szweykowska-Kuli\u0144ska Z, Jarmo\u0142owski A", "reference": { "type": "PubMed", "id": "11833778", "url": "https://pubmed.ncbi.nlm.nih.gov/11833778" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LD90-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 4", "gene_name": "CBF5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LD90", "url": "https://www.uniprot.org/uniprotkb/Q9LD90" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11833778", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dyskerin is a component of the Arabidopsis telomerase RNP required for telomere maintenance.", "journal": "Mol. 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TWISTED DWARF1, a unique plasma membrane-anchored immunophilin-like protein, interacts with Arabidopsis multidrug resistance-like transporters AtPGP1 and AtPGP19.", "journal": "Molecular biology of the cell", "date": "2003-10", "authors": "Geisler Markus, Kolukisaoglu H Uner, Bouchard Rodolphe, Billion Karla, Berger Joachim, Saal Beate, Frangne Nathalie, Koncz-Kalman Zsuzsanna, Koncz Csaba, Dudler Robert, Blakeslee Joshua J, Murphy Angus S, Martinoia Enrico, Schulz Burkhard", "reference": { "type": "PubMed", "id": "14517332", "url": "https://pubmed.ncbi.nlm.nih.gov/14517332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LDC0-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP42", "gene_name": "FKBP42", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJX0-1", "protein_name": "ABC transporter B family member 19", "gene_name": "ABCB19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZR72-1", "protein_name": "ABC transporter B family member 1", "gene_name": "ABCB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDC0", "url": "https://www.uniprot.org/uniprotkb/Q9LDC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14517332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of a plant immunophilin domain involved in regulation of MDR-type ABC transporters.", "journal": "FEBS Lett.", "date": "2006", "authors": "Weiergr\u00e4ber Oliver H, Eckhoff Andreas, Granzin Joachim", "reference": { 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Biophys. J.", "date": "2007", "authors": "Scheidt Holger A, Vogel Alexander, Eckhoff Andreas, Koenig Bernd W, Huster Daniel", "reference": { "type": "PubMed", "id": "17033777", "url": "https://pubmed.ncbi.nlm.nih.gov/17033777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LDC0-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP42", "gene_name": "FKBP42", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDC0", "url": "https://www.uniprot.org/uniprotkb/Q9LDC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17033777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of a multi-domain immunophilin from Arabidopsis thaliana: a paradigm for regulation of plant ABC transporters.", "journal": "J. Mol. Biol.", "date": "2006", "authors": "Granzin Joachim, Eckhoff Andreas, Weiergr\u00e4ber Oliver H", "reference": { "type": "PubMed", "id": "17045295", "url": "https://pubmed.ncbi.nlm.nih.gov/17045295" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LDC0-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP42", "gene_name": "FKBP42", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDC0", "url": "https://www.uniprot.org/uniprotkb/Q9LDC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17045295", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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for biotic and abiotic stress responses in Arabidopsis.", "journal": "The Plant cell", "date": "2003-11", "authors": "Mengiste Tesfaye, Chen Xi, Salmeron John, Dietrich Robert", "reference": { "type": "PubMed", "id": "14555693", "url": "https://pubmed.ncbi.nlm.nih.gov/14555693" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LDE1-1", "protein_name": "Transcription factor MYB108", "gene_name": "MYB108", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDE1", "url": "https://www.uniprot.org/uniprotkb/Q9LDE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14555693", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"2007-07", "authors": "Griffith Megan E, Mayer Ulrike, Capron Arnaud, Ngo Quy A, Surendrarao Anandkumar, McClinton Regina, J\u00fcrgens Gerd, Sundaresan Venkatesan", "reference": { "type": "PubMed", "id": "17616738", "url": "https://pubmed.ncbi.nlm.nih.gov/17616738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LFE2-1", "protein_name": "Protein TORMOZ EMBRYO DEFECTIVE", "gene_name": "TOZ", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFE2", "url": "https://www.uniprot.org/uniprotkb/Q9LFE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17616738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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Joshua, Langowski Lukasz, Nejedl\u00e1 Eliska, Fujita Hironori, Itoh Hironori, Syono Kunihiko, Hej\u00e1tko Jan, Gray William M, Martinoia Enrico, Geisler Markus, Bartel Bonnie, Murphy Angus S, Friml Jir\u00ed", "reference": { "type": "PubMed", "id": "20498067", "url": "https://pubmed.ncbi.nlm.nih.gov/20498067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LFH0-1", "protein_name": "ABC transporter G family member 37", "gene_name": "ABCG37", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIE2-1", "protein_name": "ABC transporter G family member 36", "gene_name": "ABCG36", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFH0", "url": "https://www.uniprot.org/uniprotkb/Q9LFH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20498067", 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Sudre Damien, Savir\u00f3n Mar\u00eda, Reyt Guilhem, Gaymard Fr\u00e9d\u00e9ric, Abad\u00eda Anunciaci\u00f3n, Abadia Javier, \u00c1lvarez-Fern\u00e1ndez Ana, Briat Jean-Fran\u00e7ois", "reference": { "type": "PubMed", "id": "24015802", "url": "https://pubmed.ncbi.nlm.nih.gov/24015802" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LFH0-1", "protein_name": "ABC transporter G family member 37", "gene_name": "ABCG37", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFH0", "url": "https://www.uniprot.org/uniprotkb/Q9LFH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24015802", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"uniprot_canonical_ac": "Q9LFH0-1", "protein_name": "ABC transporter G family member 37", "gene_name": "ABCG37", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIE2-1", "protein_name": "ABC transporter G family member 36", "gene_name": "ABCG36", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFH0", "url": "https://www.uniprot.org/uniprotkb/Q9LFH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28623273", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis.", "journal": "The Plant cell", "date": "2007-08", "authors": "Cheng Youfa, Dai Xinhua, Zhao Yunde", "reference": { "type": "PubMed", "id": "17704214", "url": "https://pubmed.ncbi.nlm.nih.gov/17704214" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LFM5-1", "protein_name": "Probable indole-3-pyruvate monooxygenase YUCCA4", "gene_name": "YUC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVQ0-1", "protein_name": "Probable indole-3-pyruvate 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-04", "authors": "Kriechbaumer Verena, Wang Pengwei, Hawes Chris, Abell Ben M", "reference": { "type": "PubMed", "id": "22233288", "url": "https://pubmed.ncbi.nlm.nih.gov/22233288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LFM5-1", "protein_name": "Probable indole-3-pyruvate 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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apparatus.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008-04-15", "authors": "Kang Jae Sook, Frank Julia, Kang Chang Ho, Kajiura Hiroyuki, Vikram Meenu, Ueda Akihiro, Kim Sewon, Bahk Jeong Dong, Triplett Barbara, Fujiyama Kazuhito, Lee Sang Yeol, von Schaewen Antje, Koiwa Hisashi", "reference": { "type": "PubMed", "id": "18408158", "url": "https://pubmed.ncbi.nlm.nih.gov/18408158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LFR0-1", "protein_name": "Alpha-mannosidase 2", "gene_name": "GMII", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38890-1", "protein_name": "Endoglucanase 25", "gene_name": "KOR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XGM8-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene_name": "CGL1; GNTI", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", 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Commun.", "date": "2001", "authors": "Gamboa A, Pa\u00e9z-Valencia J, Acevedo G F, V\u00e1zquez-Moreno L, Alvarez-Buylla R E", "reference": { "type": "PubMed", "id": "11689012", "url": "https://pubmed.ncbi.nlm.nih.gov/11689012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LH52-1", "protein_name": "Leucine-rich repeat protein FLOR 1", "gene_name": "FLR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P17839-1", "protein_name": "Floral homeotic protein AGAMOUS", "gene_name": "AG", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LH52", "url": "https://www.uniprot.org/uniprotkb/Q9LH52" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11689012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Investigating the role of plant heat shock proteins during oxidative stress.", "journal": "Plant Signal. Behav.", "date": "2008", "authors": "Scarpeci Telma E, Zanor Mar\u00eda I, Valle Estela M", "reference": { "type": "PubMed", "id": "19704521", "url": "https://pubmed.ncbi.nlm.nih.gov/19704521" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LHA8-1", "protein_name": "Heat shock 70 kDa protein 4", "gene_name": "HSP70-4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHA8", "url": "https://www.uniprot.org/uniprotkb/Q9LHA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19704521", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.", "journal": "The EMBO journal", "date": "2002-03-15", "authors": "Wang Haiyang, Deng Xing Wang", "reference": { "type": "PubMed", "id": "11889039", "url": "https://pubmed.ncbi.nlm.nih.gov/11889039" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LIE5-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 3", "gene_name": "FHY3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWG3-1", "protein_name": "Protein FAR-RED IMPAIRED RESPONSE 1", "gene_name": "FAR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LIE5", "url": "https://www.uniprot.org/uniprotkb/Q9LIE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11889039", 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Integr. Genomics", "date": "2004", "authors": "Champion A, Kreis M, Mockaitis K, Picaud A, Henry Y", "reference": { "type": "PubMed", "id": "14740254", "url": "https://pubmed.ncbi.nlm.nih.gov/14740254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LJD8-1", "protein_name": "MAP3K epsilon protein kinase 1", "gene_name": "M3KE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SFB6-1", "protein_name": "MAP3K epsilon protein kinase 2", "gene_name": "MAP3KE2; MAPKKK6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LJD8", "url": "https://www.uniprot.org/uniprotkb/Q9LJD8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14740254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AtSGP1, AtSGP2 and MAP4K alpha are nucleolar plant proteins that can complement fission yeast mutants lacking a functional SIN pathway.", "journal": "Journal of cell science", "date": "2004-08-15", "authors": "Champion Antony, Jouannic Stefan, Guillon St\u00e9fanie, Mockaitis Keithanne, Krapp Andrea, Picaud Alain, Simanis Viesturs, Kreis Martin, Henry Yves", "reference": { "type": "PubMed", "id": "15292395", "url": "https://pubmed.ncbi.nlm.nih.gov/15292395" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LJD8-1", "protein_name": "MAP3K epsilon protein kinase 1", "gene_name": "M3KE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SFB6-1", "protein_name": "MAP3K epsilon protein kinase 2", "gene_name": "MAP3KE2; 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family encodes a beta-1,4 glucan synthase.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007-05-15", "authors": "Cocuron Jean-Christophe, Lerouxel Olivier, Drakakaki Georgia, Alonso Ana P, Liepman Aaron H, Keegstra Kenneth, Raikhel Natasha, Wilkerson Curtis G", "reference": { "type": "PubMed", "id": "17488821", "url": "https://pubmed.ncbi.nlm.nih.gov/17488821" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LJP4-1", "protein_name": "Xyloglucan glycosyltransferase 4", "gene_name": "CSLC4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LJP4", "url": "https://www.uniprot.org/uniprotkb/Q9LJP4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17488821", "abstract": "", "glycosylation": [], 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