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Biol.", "date": "1999", "authors": "He Z H, Cheeseman I, He D, Kohorn B D", "reference": { "type": "PubMed", "id": "10380805", "url": "https://pubmed.ncbi.nlm.nih.gov/10380805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMN8-1", "protein_name": "Wall-associated receptor kinase 3", "gene_name": "WAK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMN6-1", "protein_name": "Wall-associated receptor kinase 4", "gene_name": "WAK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMN7-1", "protein_name": "Wall-associated receptor kinase 5", "gene_name": "WAK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMP1-1", "protein_name": "Wall-associated receptor kinase 2", "gene_name": "WAK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39191-1", "protein_name": "Wall-associated receptor kinase 1", "gene_name": "WAK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Response to darkness of late-responsive dark-inducible genes is positively regulated by leaf age and negatively regulated by calmodulin-antagonist-sensitive signalling in Arabidopsis thaliana.", "journal": "Plant Cell Physiol.", "date": "2005", "authors": "Fujiki Yuki, Nakagawa Yuka, Furumoto Tsuyoshi, Yoshida Satoko, Biswal Basanti, Ito Masaki, Watanabe Akira, Nishida Ikuo", "reference": { "type": "PubMed", "id": "16100230", "url": "https://pubmed.ncbi.nlm.nih.gov/16100230" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FZH5-1", "protein_name": "Mannose-6-phosphate isomerase 2", "gene_name": "DIN9; PMI2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M7Z1-1", "protein_name": "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial", "gene_name": "BCE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis phosphomannose isomerase 1, but not phosphomannose isomerase 2, is essential for ascorbic acid biosynthesis.", "journal": "The Journal of biological chemistry", "date": "2008-10-24", "authors": "Maruta Takanori, Yonemitsu Miki, Yabuta Yukinori, Tamoi Masahiro, Ishikawa Takahiro, Shigeoka Shigeru", "reference": { "type": "PubMed", "id": "18755683", "url": "https://pubmed.ncbi.nlm.nih.gov/18755683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FZH5-1", "protein_name": "Mannose-6-phosphate isomerase 2", "gene_name": "DIN9; PMI2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M884-1", "protein_name": "Mannose-6-phosphate isomerase 1", "gene_name": "PMI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FZH5", "url": "https://www.uniprot.org/uniprotkb/Q9FZH5" } ], 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[] } ] }, { "title": "Arabidopsis mutants sensitive to gamma radiation include the homologue of the human repair gene ERCC1.", "journal": "Journal of experimental botany", "date": "2003-02", "authors": "Hefner E, Preuss S B, Britt A B", "reference": { "type": "PubMed", "id": "12554710", "url": "https://pubmed.ncbi.nlm.nih.gov/12554710" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LKI5-1", "protein_name": "DNA repair endonuclease UVH1", "gene_name": "UVH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA98-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LKI5", "url": "https://www.uniprot.org/uniprotkb/Q9LKI5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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U.S.A.", "date": "2008", "authors": "Glick Efrat, Zrachya Avi, Levy Yael, Mett Anahit, Gidoni David, Belausov Eduard, Citovsky Vitaly, Gafni Yedidya", "reference": { "type": "PubMed", "id": "18165314", "url": "https://pubmed.ncbi.nlm.nih.gov/18165314" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LDX1-1", "protein_name": "Protein SUPPRESSOR OF GENE SILENCING 3", "gene_name": "SGS3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDX1", "url": "https://www.uniprot.org/uniprotkb/Q9LDX1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18165314", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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[] } ] }, { "title": "Arabidopsis CHLI2 can substitute for CHLI1.", "journal": "Plant physiology", "date": "2009-06", "authors": "Huang Yi-Shiuan, Li Hsou-Min", "reference": { "type": "PubMed", "id": "19363094", "url": "https://pubmed.ncbi.nlm.nih.gov/19363094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FNB0-1", "protein_name": "Magnesium-chelatase subunit ChlH, chloroplastic", "gene_name": "CHLH; GUN5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5XF33-1", "protein_name": "Magnesium-chelatase subunit ChlI-2, chloroplastic", "gene_name": "CHLI2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNB0", "url": "https://www.uniprot.org/uniprotkb/Q9FNB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19363094", "abstract": "", 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C24: sequence and transcript analysis of the gene, import of the protein into chloroplasts and in situ localisation of the transcript.", "journal": "Plant Physiol.", "date": "1996", "authors": "Gibson L C, Marrison J L, Leech R M, Jensen P E, Bassham D C, Gibson M, Hunter C N", "reference": { "type": "PubMed", "id": "8685276", "url": "https://pubmed.ncbi.nlm.nih.gov/8685276" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FNB0-1", "protein_name": "Magnesium-chelatase subunit ChlH, chloroplastic", "gene_name": "CHLH; GUN5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNB0", "url": "https://www.uniprot.org/uniprotkb/Q9FNB0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8685276", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function.", "journal": "The New phytologist", "date": "2009-10", "authors": "Ni Di An, Sozzani Rosangela, Blanchet Sophie, Domenichini S\u00e9verine, Reuzeau Christophe, Cella Rino, Bergounioux Catherine, Raynaud C\u00e9cile", "reference": { "type": "PubMed", "id": "19650778", "url": "https://pubmed.ncbi.nlm.nih.gov/19650778" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LPD9-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "MCM2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LPD9", "url": "https://www.uniprot.org/uniprotkb/Q9LPD9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19650778", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis thaliana MCM2 plays role(s) in mungbean yellow mosaic India virus (MYMIV) DNA replication.", "journal": "Archives of virology", "date": "2013-05", "authors": "Suyal Geetika, Mukherjee Sunil K, Srivastava Prem S, Choudhury Nirupam R", "reference": { "type": "PubMed", "id": "23242774", "url": "https://pubmed.ncbi.nlm.nih.gov/23242774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LPD9-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "MCM2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light.", "journal": "The Plant cell", "date": "2002-12", "authors": "del Pozo Juan Carlos, Boniotti Maria Beatrice, Gutierrez Crisanto", "reference": { "type": "PubMed", "id": "12468727", "url": "https://pubmed.ncbi.nlm.nih.gov/12468727" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FV70-1", "protein_name": "Transcription factor E2FC", "gene_name": "ATE2F2; E2FC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPL4-1", "protein_name": "F-box protein SKP2A", "gene_name": "SKP2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FV70", "url": "https://www.uniprot.org/uniprotkb/Q9FV70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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"The Plant cell", "date": "2006-09", "authors": "del Pozo Juan C, Diaz-Trivino Sara, Cisneros Nerea, Gutierrez Crisanto", "reference": { "type": "PubMed", "id": "16920782", "url": "https://pubmed.ncbi.nlm.nih.gov/16920782" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FV70-1", "protein_name": "Transcription factor E2FC", "gene_name": "ATE2F2; E2FC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNY2-1", "protein_name": "Transcription factor-like protein DPB", "gene_name": "DPB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPL4-1", "protein_name": "F-box protein SKP2A", "gene_name": "SKP2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FV70", "url": "https://www.uniprot.org/uniprotkb/Q9FV70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Scofield Simon, Huntley Rachael P, Robinson Alastair S, den Boer Bart G W, Murray James A H", "reference": { "type": "PubMed", "id": "19662336", "url": "https://pubmed.ncbi.nlm.nih.gov/19662336" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FV70-1", "protein_name": "Transcription factor E2FC", "gene_name": "ATE2F2; E2FC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNY0-1", "protein_name": "Transcription factor E2FA", "gene_name": "E2F3; E2FA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FV70", "url": "https://www.uniprot.org/uniprotkb/Q9FV70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19662336", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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efficient excision of two mitochondrial introns spliced via first-step hydrolysis.", "journal": "Nucleic acids research", "date": "2015-07-27", "authors": "Gualberto Jos\u00e9 M, Le Ret Monique, Beator Barbara, K\u00fchn Kristina", "reference": { "type": "PubMed", "id": "26048959", "url": "https://pubmed.ncbi.nlm.nih.gov/26048959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FVV7-1", "protein_name": "DNA repair RAD52-like protein 1, mitochondrial", "gene_name": "RAD52-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FVV7", "url": "https://www.uniprot.org/uniprotkb/Q9FVV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26048959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of HD2 histone deacetylase homologues in Arabidopsis thaliana.", "journal": "The Plant journal : for cell and molecular biology", "date": "2000-04", "authors": "Wu K, Tian L, Malik K, Brown D, Miki B", "reference": { "type": "PubMed", "id": "10792817", "url": "https://pubmed.ncbi.nlm.nih.gov/10792817" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FVE6-1", "protein_name": "Histone deacetylase 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acid signaling.", "journal": "Plant physiology", "date": "2008-11", "authors": "Wawrzynska Anna, Christiansen Katy M, Lan Yinan, Rodibaugh Natalie L, Innes Roger W", "reference": { "type": "PubMed", "id": "18815384", "url": "https://pubmed.ncbi.nlm.nih.gov/18815384" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FY48-1", "protein_name": "E3 ubiquitin-protein ligase KEG", "gene_name": "KEG", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FPR3-1", "protein_name": "Serine/threonine-protein kinase EDR1", "gene_name": "EDR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY48", "url": "https://www.uniprot.org/uniprotkb/Q9FY48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 1144, "end_pos": 1144, "sequence_org": "G", "sequence_mut": 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"2007-05", "authors": "Verslues Paul E, Kim Yong-Sig, Zhu Jian-Kang", "reference": { "type": "PubMed", "id": "17318317", "url": "https://pubmed.ncbi.nlm.nih.gov/17318317" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LR30-1", "protein_name": "Glutamate--glyoxylate aminotransferase 1", "gene_name": "GGAT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LR30", "url": "https://www.uniprot.org/uniprotkb/Q9LR30" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 109, "end_pos": 109, "sequence_org": "L", "sequence_mut": "F", "comment": "In ggt1-1; loss of alanine aminotransferase activity. 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