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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of the yeast CKI gene encoding choline kinase and its expression in Escherichia coli.", "journal": "The Journal of biological chemistry", "date": "1989-02-05", "authors": "Hosaka K, Kodaki T, Yamashita S", "reference": { "type": "PubMed", "id": "2536698", "url": "https://pubmed.ncbi.nlm.nih.gov/2536698" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P20485-1", "protein_name": "Choline kinase", "gene_name": "CKI1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P20485", "url": "https://www.uniprot.org/uniprotkb/P20485" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2536698", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Cell", "date": "2003", "authors": "D\u00fcvel Katrin, Santhanam Arti, Garrett Stephen, Schneper Lisa, Broach James R", "reference": { "type": "PubMed", "id": "12820961", "url": "https://pubmed.ncbi.nlm.nih.gov/12820961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P20604-1", "protein_name": "Serine/threonine-protein phosphatase PP1-1", "gene_name": "SIT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04372-1", "protein_name": "Type 2A phosphatase-associated protein 42", "gene_name": "TAP42", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P20604", "url": "https://www.uniprot.org/uniprotkb/P20604" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12820961", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeast phosphotyrosyl phosphatase activator is part of the Tap42-phosphatase complexes.", "journal": "Mol. Biol. Cell", "date": "2005", "authors": "Zheng Yin, Jiang Yu", "reference": { "type": "PubMed", "id": "15689491", "url": "https://pubmed.ncbi.nlm.nih.gov/15689491" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P20604-1", "protein_name": "Serine/threonine-protein phosphatase PP1-1", "gene_name": "SIT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23594-1", "protein_name": "Serine/threonine-protein phosphatase PP2A-1 catalytic subunit", "gene_name": "PPH21", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40454-1", "protein_name": "Serine/threonine-protein phosphatase 2A activator 1", "gene_name": "RRD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12461-1", "protein_name": "Serine/threonine-protein phosphatase 2A activator 2", "gene_name": "RRD2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P20604", "url": "https://www.uniprot.org/uniprotkb/P20604" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15689491", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SIT4 protein phosphatase functions in late G1 for progression into S phase.", "journal": "Mol. 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Biol.", "date": "1991", "authors": "Sutton A, Immanuel D, Arndt K T", "reference": { "type": "PubMed", "id": "1848673", "url": "https://pubmed.ncbi.nlm.nih.gov/1848673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P20604-1", "protein_name": "Serine/threonine-protein phosphatase PP1-1", "gene_name": "SIT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23595-1", "protein_name": "Serine/threonine-protein phosphatase PP2A-2 catalytic subunit", "gene_name": "PPH22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P24276-1", "protein_name": "Protein SSD1", "gene_name": "SSD1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P20604", "url": "https://www.uniprot.org/uniprotkb/P20604" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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[] } ] }, { "title": "Identification of the YMN-1 antigen protein and biochemical analyses of protein components in the mitochondrial nucleoid fraction of the yeast Saccharomyces cerevisiae.", "journal": "Protoplasma", "date": "2002-02", "authors": "Sato H, Tachifuji A, Tamura M, Miyakawa I", "reference": { "type": "PubMed", "id": "11926067", "url": "https://pubmed.ncbi.nlm.nih.gov/11926067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P20967-1", "protein_name": "2-oxoglutarate dehydrogenase, mitochondrial", "gene_name": "KGD1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P20967", "url": "https://www.uniprot.org/uniprotkb/P20967" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11926067", "abstract": "", "glycosylation": [], "mutagenesis": 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Biol.", "date": "1991", "authors": "Repetto B, Tzagoloff A", "reference": { "type": "PubMed", "id": "2072900", "url": "https://pubmed.ncbi.nlm.nih.gov/2072900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P20967-1", "protein_name": "2-oxoglutarate dehydrogenase, mitochondrial", "gene_name": "KGD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P09624-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "LPD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19262-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "KGD2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P20967", "url": "https://www.uniprot.org/uniprotkb/P20967" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", 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[] } ] }, { "title": "The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA.", "journal": "The Journal of biological chemistry", "date": "1996-12-27", "authors": "O'Day C L, Dalbadie-McFarland G, Abelson J", "reference": { "type": "PubMed", "id": "8969184", "url": "https://pubmed.ncbi.nlm.nih.gov/8969184" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21372-1", "protein_name": "Pre-mRNA-processing ATP-dependent RNA helicase PRP5", "gene_name": "PRP5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P21372", "url": "https://www.uniprot.org/uniprotkb/P21372" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8969184", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Revised nucleotide sequence of the COR region of yeast Saccharomyces cerevisiae chromosome X.", "journal": "Yeast", "date": "1994", "authors": "Huang M E, Manus V, Chuat J C, Galibert F", "reference": { "type": "PubMed", "id": "7975898", "url": "https://pubmed.ncbi.nlm.nih.gov/7975898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21373-1", "protein_name": "NAD(+) kinase", "gene_name": "UTR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21374-1", "protein_name": "Pre-mRNA-splicing factor ISY1", "gene_name": "ISY1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21375-1", "protein_name": "Fumarate reductase 2", "gene_name": "OSM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P00044-1", "protein_name": "Cytochrome c isoform 1", "gene_name": "CYC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06779-1", "protein_name": "DNA 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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Biol. Chem.", "date": "1989", "authors": "Wu M, Tzagoloff A", "reference": { "type": "PubMed", "id": "2544586", "url": "https://pubmed.ncbi.nlm.nih.gov/2544586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21560-1", "protein_name": "Protein CBP3, mitochondrial", "gene_name": "CBP3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P21560", "url": "https://www.uniprot.org/uniprotkb/P21560" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2544586", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Meiosis-specific RNA splicing in yeast.", "journal": "Cell", "date": "1991", "authors": "Engebrecht J A, Voelkel-Meiman K, Roeder G S", "reference": { "type": "PubMed", "id": "1840507", "url": "https://pubmed.ncbi.nlm.nih.gov/1840507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21651-1", "protein_name": "Recombination protein 107", "gene_name": "REC107", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P21651", "url": "https://www.uniprot.org/uniprotkb/P21651" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1840507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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catalytic activity strongly stimulated after the formation of a cross-talking Rnr1/Rnr3 complex.", "journal": "The Journal of biological chemistry", "date": "2002-05-24", "authors": "Domkin Vladimir, Thelander Lars, Chabes Andrei", "reference": { "type": "PubMed", "id": "11893751", "url": "https://pubmed.ncbi.nlm.nih.gov/11893751" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21672-1", "protein_name": "Ribonucleoside-diphosphate reductase large chain 2", "gene_name": "RNR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21524-1", "protein_name": "Ribonucleoside-diphosphate reductase large chain 1", "gene_name": "RNR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P21672", "url": "https://www.uniprot.org/uniprotkb/P21672" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae 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Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Yao Ruojin, Zhang Zhen, An Xiuxiang, Bucci Brigid, Perlstein Deborah L, Stubbe JoAnne, Huang Mingxia", "reference": { "type": "PubMed", "id": "12732713", "url": "https://pubmed.ncbi.nlm.nih.gov/12732713" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21672-1", "protein_name": "Ribonucleoside-diphosphate reductase large chain 2", "gene_name": "RNR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P09938-1", "protein_name": "Ribonucleoside-diphosphate reductase small chain 1", "gene_name": "RNR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21524-1", "protein_name": "Ribonucleoside-diphosphate reductase large chain 1", "gene_name": "RNR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49723-1", "protein_name": "Ribonucleoside-diphosphate reductase small chain 2", "gene_name": "RNR4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase.", "journal": "Genes Dev.", "date": "1990", "authors": "Elledge S J, Davis R W", "reference": { "type": "PubMed", "id": "2199320", "url": "https://pubmed.ncbi.nlm.nih.gov/2199320" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21672-1", "protein_name": "Ribonucleoside-diphosphate reductase large chain 2", "gene_name": "RNR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21524-1", "protein_name": "Ribonucleoside-diphosphate reductase large chain 1", "gene_name": "RNR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P21672", "url": "https://www.uniprot.org/uniprotkb/P21672" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", 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RNR3.", "journal": "Mol. Cell. 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