[ { "title": "The structural basis of the activation of Ras by Sos.", "journal": "Nature", "date": "1998", "authors": "Boriack-Sjodin PA, Margarit SM, Bar-Sagi D, Kuriyan J", "reference": { "type": "PubMed", "id": "9690470", "url": "https://pubmed.ncbi.nlm.nih.gov/9690470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06213-1", "protein_name": "Insulin receptor", "gene_name": "INSR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14451-1", "protein_name": "Growth factor receptor-bound protein 7", "gene_name": "GRB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08069-1", "protein_name": "Insulin-like growth factor 1 receptor", "gene_name": "IGF1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15123-1", "protein_name": "Angiopoietin-2", "gene_name": "ANGPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15389-1", "protein_name": "Angiopoietin-1", "gene_name": "ANGPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y264-1", "protein_name": "Angiopoietin-4", "gene_name": "ANGPT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02763-1", "protein_name": "Angiopoietin-1 receptor", "gene_name": "TEK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01112-1", "protein_name": "GTPase HRas", "gene_name": "HRAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43405-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26717-1", "protein_name": "NKG2-C type II integral membrane protein", "gene_name": "KLRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14449-1", "protein_name": "Growth factor receptor-bound protein 14", "gene_name": "GRB14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26718-1", "protein_name": "NKG2-D type II integral membrane 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"uniprot_canonical_ac": "Q9UKW4-1", "protein_name": "Guanine nucleotide exchange factor VAV3", "gene_name": "VAV3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43914-1", "protein_name": "TYRO protein tyrosine kinase-binding protein", "gene_name": "TYROBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZC2-1", "protein_name": "Triggering receptor expressed on myeloid cells 2", "gene_name": "TREM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13094-1", "protein_name": "Lymphocyte cytosolic protein 2", "gene_name": "LCP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01344-1", "protein_name": "Insulin-like growth factor 2", "gene_name": "IGF2", "tax_name": "Human" }, { 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U.S.A.", "date": "2000", "authors": "Shen P, Wang F, Underhill PA, Franco C, Yang WH, Roxas A, Sung R, Lin AA, Hyman RW, Vollrath D, Davis RW, Cavalli-Sforza LL, Oefner PJ", "reference": { "type": "PubMed", "id": "10861003", "url": "https://pubmed.ncbi.nlm.nih.gov/10861003" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10861003", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"uniprot_canonical_ac": "Q14865-1", "protein_name": "AT-rich interactive domain-containing protein 5B", "gene_name": "ARID5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R0-1", "protein_name": "Lysine-specific demethylase 4C", "gene_name": "KDM4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6B0I6-1", "protein_name": "Lysine-specific demethylase 4D", "gene_name": "KDM4D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LBC6-1", "protein_name": "Lysine-specific demethylase 3B", "gene_name": "KDM3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14607-1", "protein_name": "Histone demethylase UTY", "gene_name": "UTY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4C1-1", "protein_name": "Lysine-specific demethylase 3A", "gene_name": "KDM3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15550-1", "protein_name": 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"uniprot_canonical_ac": "Q6NYC1-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "JMJD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75164-1", "protein_name": "Lysine-specific demethylase 4A", "gene_name": "KDM4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPP1-1", "protein_name": "Histone lysine demethylase PHF8", "gene_name": "PHF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75151-1", "protein_name": "Lysine-specific demethylase PHF2", "gene_name": "PHF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15054-2", "protein_name": "Lysine-specific demethylase 6B", "gene_name": "KDM6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], 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immunology (Baltimore, Md. : 1950)", "date": "2005-11-01", "authors": "Mulder Arend, Eijsink Chantal, Kester Michel G D, Franke Marry E I, Kardol Marrie J, Heemskerk Mirjam H M, van Kooten Cees, Verreck Frank A, Drijfhout Jan Wouter, Koning Frits, Doxiadis Ilias I N, Claas Frans H J", "reference": { "type": "PubMed", "id": "16237088", "url": "https://pubmed.ncbi.nlm.nih.gov/16237088" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78395-1", "protein_name": "Melanoma antigen preferentially expressed in tumors", "gene_name": "PRAME", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49327-1", "protein_name": "Fatty acid synthase", "gene_name": "FASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "B0I1T2-1", "protein_name": "Unconventional myosin-Ig", "gene_name": "MYO1G", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16237088", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Histone demethylation by a family of JmjC domain-containing proteins.", "journal": "Nature", "date": "2006", "authors": "Tsukada Y, Fang J, Erdjument-Bromage H, Warren ME, Borchers CH, Tempst P, Zhang Y", "reference": { "type": "PubMed", "id": "16362057", "url": "https://pubmed.ncbi.nlm.nih.gov/16362057" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NB78-1", "protein_name": "Lysine-specific 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No loss of its ability to repress the transcriptional activator activity of the CLOCK-BMAL1 heterodimer.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2K7", "url": "https://www.uniprot.org/uniprotkb/Q9Y2K7" }, { "database": "PubMed", "id": "16362057", "url": "https://pubmed.ncbi.nlm.nih.gov/16362057" }, { "database": "PubMed", "id": "26037310", "url": "https://pubmed.ncbi.nlm.nih.gov/26037310" } ], "uniprot_canonical_ac": "Q9Y2K7-1" }, { "start_pos": 305, "end_pos": 305, "sequence_org": "H", "sequence_mut": "A", "comment": "Abolishes histone demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "P40034", "url": "https://www.uniprot.org/uniprotkb/P40034" }, { "database": "PubMed", "id": "16362057", "url": "https://pubmed.ncbi.nlm.nih.gov/16362057" } ], "uniprot_canonical_ac": "P40034-1" } ], "record_id": "pubmed.16362057", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases.", "journal": "Cell", "date": "2007", "authors": "Iwase S, Lan F, Bayliss P, de la Torre-Ubieta L, Huarte M, Qi HH, Whetstine JR, Bonni A, Roberts TM, Shi Y", "reference": { "type": "PubMed", "id": "17320160", "url": "https://pubmed.ncbi.nlm.nih.gov/17320160" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX7-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "AICDA", "tax_name": "Human" }, { "uniprot_canonical_ac": "B0S6L0-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "kdm5c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43151-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "TET3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6W0C5-1", "protein_name": "Developmental pluripotency-associated protein 3", "gene_name": "DPPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15550-1", "protein_name": "Lysine-specific demethylase 6A", "gene_name": "KDM6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGL1-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "KDM5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N801-1", "protein_name": "Protein STPG4", "gene_name": "STPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T88-1", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "gene_name": "UHRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15054-2", "protein_name": "Lysine-specific demethylase 6B", "gene_name": "KDM6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XA0-1", "protein_name": "Histone-arginine methyltransferase METTL23", "gene_name": "METTL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80Y84-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "Kdm5b", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 514, "end_pos": 514, "sequence_org": "H", "sequence_mut": "A", "comment": "Abolishes lysine-specific histone demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "P41229", "url": "https://www.uniprot.org/uniprotkb/P41229" }, { "database": "PubMed", "id": "17468742", "url": "https://pubmed.ncbi.nlm.nih.gov/17468742" }, { "database": "PubMed", "id": "17320160", "url": "https://pubmed.ncbi.nlm.nih.gov/17320160" } ], "uniprot_canonical_ac": "P41229-1" } ], "record_id": "pubmed.17320160", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a polycomb-like protein.", "journal": "Cell", "date": "2007", "authors": "Lee MG, Norman J, Shilatifard A, Shiekhattar R", "reference": { "type": "PubMed", "id": "17320162", "url": "https://pubmed.ncbi.nlm.nih.gov/17320162" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYE7-1", "protein_name": "Polycomb group RING finger protein 6", "gene_name": "PCGF6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 534, "end_pos": 534, "sequence_org": "H", "sequence_mut": "A", "comment": "Abolishes enzymatic activity; when associated with A-536.", "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" }, { "database": "PubMed", "id": "17320162", "url": "https://pubmed.ncbi.nlm.nih.gov/17320162" } ], "uniprot_canonical_ac": "Q9BY66-1" }, { "start_pos": 536, "end_pos": 536, "sequence_org": "E", "sequence_mut": "A", "comment": "Abolishes enzymatic activity; when associated with A-534.", "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" }, { "database": "PubMed", "id": "17320162", "url": "https://pubmed.ncbi.nlm.nih.gov/17320162" } ], "uniprot_canonical_ac": "Q9BY66-1" } ], "record_id": "pubmed.17320162", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The retinoblastoma binding protein RBP2 is an H3K4 demethylase.", "journal": "Cell", "date": "2007", "authors": "Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG Jr", "reference": { "type": "PubMed", "id": "17320163", "url": "https://pubmed.ncbi.nlm.nih.gov/17320163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX7-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "AICDA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NB78-1", "protein_name": "Lysine-specific histone demethylase 2", "gene_name": "KDM1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43151-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "TET3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUF8-1", "protein_name": "Ribosomal oxygenase 2", "gene_name": "RIOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHM5-1", "protein_name": "Lysine-specific demethylase 2B", "gene_name": "KDM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6W0C5-1", "protein_name": "Developmental pluripotency-associated protein 3", "gene_name": "DPPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14865-1", "protein_name": "AT-rich interactive domain-containing protein 5B", "gene_name": "ARID5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R0-1", "protein_name": "Lysine-specific demethylase 4C", "gene_name": "KDM4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6B0I6-1", "protein_name": "Lysine-specific demethylase 4D", "gene_name": "KDM4D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LBC6-1", "protein_name": "Lysine-specific demethylase 3B", "gene_name": "KDM3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14607-1", "protein_name": "Histone demethylase UTY", "gene_name": "UTY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4C1-1", "protein_name": "Lysine-specific demethylase 3A", "gene_name": "KDM3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15550-1", "protein_name": "Lysine-specific demethylase 6A", "gene_name": "KDM6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2K7-1", "protein_name": "Lysine-specific demethylase 2A", "gene_name": "KDM2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGL1-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "KDM5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NYC1-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "JMJD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75164-1", "protein_name": "Lysine-specific demethylase 4A", "gene_name": "KDM4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPP1-1", "protein_name": "Histone lysine demethylase PHF8", "gene_name": "PHF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75151-1", "protein_name": "Lysine-specific demethylase PHF2", "gene_name": "PHF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N801-1", "protein_name": "Protein STPG4", "gene_name": "STPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T88-1", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "gene_name": "UHRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15054-2", "protein_name": "Lysine-specific demethylase 6B", "gene_name": "KDM6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XA0-1", "protein_name": "Histone-arginine methyltransferase METTL23", "gene_name": "METTL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3UXZ9-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "Kdm5a", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17320163", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 58 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase.", "journal": "Nature structural & molecular biology", "date": "2007-04", "authors": "Eissenberg Joel C, Lee Min Gyu, Schneider Jessica, Ilvarsonn Anne, Shiekhattar Ramin, Shilatifard Ali", "reference": { "type": "PubMed", "id": "17351630", "url": "https://pubmed.ncbi.nlm.nih.gov/17351630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KU24-1", "protein_name": "ATP-dependent chromatin remodeler Chd1", "gene_name": "Chd1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VMJ7-1", "protein_name": "Lysine-specific demethylase 5", "gene_name": "Kdm5", "tax_name": "Fruit fly" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17351630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase.", "journal": "Nature structural & molecular biology", "date": "2007", "authors": "Lee N, Zhang J, Klose RJ, Erdjument-Bromage H, Tempst P, Jones RS, Zhang Y", "reference": { "type": "PubMed", "id": "17351631", "url": "https://pubmed.ncbi.nlm.nih.gov/17351631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NB78-1", "protein_name": "Lysine-specific histone demethylase 2", "gene_name": "KDM1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VMJ7-1", "protein_name": "Lysine-specific demethylase 5", "gene_name": "Kdm5", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8IUF8-1", "protein_name": "Ribosomal oxygenase 2", "gene_name": "RIOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHM5-1", "protein_name": "Lysine-specific demethylase 2B", "gene_name": "KDM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14865-1", "protein_name": "AT-rich interactive domain-containing protein 5B", "gene_name": "ARID5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R0-1", "protein_name": "Lysine-specific demethylase 4C", "gene_name": "KDM4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6B0I6-1", "protein_name": "Lysine-specific demethylase 4D", "gene_name": "KDM4D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LBC6-1", "protein_name": "Lysine-specific demethylase 3B", "gene_name": "KDM3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14607-1", "protein_name": "Histone demethylase UTY", "gene_name": "UTY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4C1-1", "protein_name": "Lysine-specific demethylase 3A", "gene_name": "KDM3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15550-1", "protein_name": "Lysine-specific demethylase 6A", "gene_name": "KDM6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2K7-1", "protein_name": "Lysine-specific demethylase 2A", "gene_name": "KDM2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGL1-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "KDM5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NYC1-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "JMJD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75164-1", "protein_name": "Lysine-specific demethylase 4A", "gene_name": "KDM4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPP1-1", "protein_name": "Histone lysine demethylase PHF8", "gene_name": "PHF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75151-1", "protein_name": "Lysine-specific demethylase PHF2", "gene_name": "PHF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15054-2", "protein_name": "Lysine-specific demethylase 6B", "gene_name": "KDM6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17351631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"journal": "Cell cycle (Georgetown, Tex.)", "date": "2009", "authors": "Lu Y, Chang Q, Zhang Y, Beezhold K, Rojanasakul Y, Zhao H, Castranova V, Shi X, Chen F", "reference": { "type": "PubMed", "id": "19502796", "url": "https://pubmed.ncbi.nlm.nih.gov/19502796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NB78-1", "protein_name": "Lysine-specific histone demethylase 2", "gene_name": "KDM1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUF8-1", "protein_name": "Ribosomal oxygenase 2", "gene_name": "RIOX2", "tax_name": "Human" }, { 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.", "journal": "Nature structural & molecular biology", "date": "2010", "authors": "Horton JR, Upadhyay AK, Qi HH, Zhang X, Shi Y, Cheng X", "reference": { "type": "PubMed", "id": "20023638", "url": "https://pubmed.ncbi.nlm.nih.gov/20023638" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": 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{ "uniprot_canonical_ac": "Q9UGL1-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "KDM5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NYC1-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "JMJD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75164-1", "protein_name": 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Vladimir, Blake Loren, Mandrell Michael, Wu Catherine J, Sarantopoulos Stefanie, Bellucci Roberto, Keskin Derin B, Soiffer Robert J, Antin Joseph H, Ritz Jerome", "reference": { "type": "PubMed", "id": "20160060", "url": "https://pubmed.ncbi.nlm.nih.gov/20160060" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZA8-1", "protein_name": "Protocadherin-11 Y-linked", "gene_name": "PCDH11Y", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14607-1", "protein_name": "Histone demethylase UTY", "gene_name": "UTY", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15523-1", "protein_name": "ATP-dependent RNA helicase DDX3Y", "gene_name": "DDX3Y", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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through H3K4me3 binding and H3K9me1/2 demethylation.", "journal": "Nature structural & molecular biology", "date": "2010", "authors": "Feng W, Yonezawa M, Ye J, Jenuwein T, Grummt I", "reference": { "type": "PubMed", "id": "20208542", "url": "https://pubmed.ncbi.nlm.nih.gov/20208542" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NB78-1", "protein_name": "Lysine-specific histone demethylase 2", "gene_name": "KDM1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUF8-1", "protein_name": "Ribosomal oxygenase 2", "gene_name": "RIOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHM5-1", "protein_name": "Lysine-specific demethylase 2B", "gene_name": "KDM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14865-1", "protein_name": "AT-rich interactive domain-containing protein 5B", "gene_name": "ARID5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R0-1", "protein_name": "Lysine-specific demethylase 4C", "gene_name": "KDM4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6B0I6-1", "protein_name": "Lysine-specific demethylase 4D", "gene_name": "KDM4D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LBC6-1", "protein_name": "Lysine-specific demethylase 3B", "gene_name": "KDM3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14607-1", "protein_name": "Histone demethylase UTY", "gene_name": "UTY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4C1-1", "protein_name": 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"uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NYC1-1", "protein_name": "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6", "gene_name": "JMJD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75164-1", "protein_name": "Lysine-specific demethylase 4A", "gene_name": "KDM4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPP1-1", "protein_name": "Histone lysine demethylase PHF8", "gene_name": "PHF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75151-1", "protein_name": "Lysine-specific demethylase PHF2", "gene_name": "PHF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15054-2", "protein_name": "Lysine-specific demethylase 6B", "gene_name": "KDM6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZMT4-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "KDM7A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 283, "end_pos": 285, "sequence_org": "HID", "sequence_mut": "AAA", "comment": "Abolishes histone methyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPP1", "url": "https://www.uniprot.org/uniprotkb/Q9UPP1" }, { "database": "PubMed", "id": "20208542", "url": "https://pubmed.ncbi.nlm.nih.gov/20208542" } ], "uniprot_canonical_ac": "Q9UPP1-1" }, { "start_pos": 43, "end_pos": 43, "sequence_org": "Y", "sequence_mut": "A", "comment": "Abolishes binding to H3K4me3; when associated with A-50.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPP1", "url": "https://www.uniprot.org/uniprotkb/Q9UPP1" }, { "database": "PubMed", "id": "20622853", "url": "https://pubmed.ncbi.nlm.nih.gov/20622853" }, { "database": 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression.", "journal": "Nature", "date": "2010", "authors": "Liu W, Tanasa B, Tyurina OV, Zhou TY, Gassmann R, Liu WT, Ohgi KA, Benner C, Garcia-Bassets I, Aggarwal AK, Desai A, Dorrestein PC, Glass CK, Rosenfeld MG", "reference": { "type": "PubMed", "id": "20622854", "url": "https://pubmed.ncbi.nlm.nih.gov/20622854" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PKA-dependent regulation of the histone lysine demethylase complex PHF2-ARID5B.", "journal": "Nature cell biology", "date": "2011", "authors": "Baba A, Ohtake F, Okuno Y, Yokota K, Okada M, Imai Y, Ni M, Meyer CA, Igarashi K, Kanno J, Brown M, Kato S", "reference": { "type": "PubMed", "id": "21532585", "url": "https://pubmed.ncbi.nlm.nih.gov/21532585" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29375-1", "protein_name": "Lysine-specific demethylase 5A", "gene_name": "KDM5A", "tax_name": "Human" 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[] } ] }, { "title": "Y disruption, autosomal hypomethylation and poor male lung cancer survival.", "journal": "Scientific reports", "date": "2021", "authors": "Willis-Owen SAG, Domingo-Sabugo C, Starren E, Liang L, Freidin MB, Arseneault M, Zhang Y, Lu SK, Popat S, Lim E, Nicholson AG, Riazalhosseini Y, Lathrop M, Cookson WOC, Moffatt MF", "reference": { "type": "PubMed", "id": "34127738", "url": "https://pubmed.ncbi.nlm.nih.gov/34127738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34127738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Genet.", "date": "1996", "authors": "Kent-First M G, Maffitt M, Muallem A, Brisco P, Shultz J, Ekenberg S, Agulnik A I, Agulnik I, Shramm D, Bavister B, Abdul-Mawgood A, VandeBerg J", "reference": { "type": "PubMed", "id": "8841177", "url": "https://pubmed.ncbi.nlm.nih.gov/8841177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8841177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of mutation rates in the SMCY/SMCX genes shows that mammalian evolution is male driven.", "journal": "Mamm. Genome", "date": "1997", "authors": "Agulnik A I, Bishop C E, Lerner J L, Agulnik S I, Solovyev V V", "reference": { "type": "PubMed", "id": "9060413", "url": "https://pubmed.ncbi.nlm.nih.gov/9060413" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": "https://www.uniprot.org/uniprotkb/Q9BY66" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9060413", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HA-1 and the SMCY-derived peptide FIDSYICQV (H-Y) are immunodominant minor histocompatibility antigens after bone marrow transplantation.", "journal": "Transplantation", "date": "1998-10-15", "authors": "Rufer N, Wolpert E, Helg C, Tiercy J M, Gratwohl A, Chapuis B, Jeannet M, Goulmy E, Roosnek E", "reference": { "type": "PubMed", "id": "9798702", "url": "https://pubmed.ncbi.nlm.nih.gov/9798702" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BY66-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "KDM5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92619-1", "protein_name": "Rho GTPase-activating protein 45", "gene_name": "ARHGAP45", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BY66", "url": 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AHNAK methylation in peripheral blood immune cells for HBV-related hepatopathy.", "journal": "Frontiers in immunology", "date": "2022", "authors": "Sun Libo, Lu Junfeng, Li Kang, Zhang Haitao, Zhao Xiaofei, Li Guangming, Li Ning", "reference": { "type": "PubMed", "id": "36713363", "url": "https://pubmed.ncbi.nlm.nih.gov/36713363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULZ2-1", "protein_name": "Signal-transducing adaptor protein 1", "gene_name": "STAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09666-1", "protein_name": "Neuroblast differentiation-associated protein AHNAK", "gene_name": "AHNAK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9ULZ2", "url": "https://www.uniprot.org/uniprotkb/Q9ULZ2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36713363", "abstract": "", 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"Tensin is potentially involved in extracellular matrix production in mesangial cells.", "journal": "Histochemistry and cell biology", "date": "2004", "authors": "Yamashita M, Horikoshi S, Asanuma K, Takahara H, Shirato I, Tomino Y", "reference": { "type": "PubMed", "id": "14991332", "url": "https://pubmed.ncbi.nlm.nih.gov/14991332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HBL0-3", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HBL0", "url": "https://www.uniprot.org/uniprotkb/Q9HBL0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14991332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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U.S.A.", "date": "2007", "authors": "Qian Xiaolan, Li Guorong, Asmussen Holly K, Asnaghi Laura, Vass William C, Braverman Richard, Yamada Kenneth M, Popescu Nicholas C, Papageorge Alex G, Lowy Douglas R", "reference": { "type": "PubMed", "id": "17517630", "url": "https://pubmed.ncbi.nlm.nih.gov/17517630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HBL0-3", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92502-1", "protein_name": "StAR-related lipid transfer protein 8", "gene_name": "STARD8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HBL0", "url": "https://www.uniprot.org/uniprotkb/Q9HBL0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17517630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tensin1 requires protein phosphatase-1alpha in addition to RhoGAP DLC-1 to control cell polarization, migration, and invasion.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Hall EH, Daugherty AE, Choi CK, Horwitz AF, Brautigan DL", "reference": { "type": "PubMed", "id": "19826001", "url": "https://pubmed.ncbi.nlm.nih.gov/19826001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HBL0-3", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QB1-2", "protein_name": "Rho GTPase-activating protein 7", "gene_name": "DLC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HBL0", "url": "https://www.uniprot.org/uniprotkb/Q9HBL0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1592, "end_pos": 1592, "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces interaction with DLC1 but does not affect interaction with PPP1CA. 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Cell. Biochem.", "date": "2010", "authors": "Clark Katherine, Howe Jonathan D, Pullar Christine E, Green J Angelo, Artym Vira V, Yamada Kenneth M, Critchley David R", "reference": { "type": "PubMed", "id": "20069572", "url": "https://pubmed.ncbi.nlm.nih.gov/20069572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HBL0-3", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q63HR2-1", "protein_name": "Tensin-2", "gene_name": "TNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ2-1", "protein_name": "Tensin-3", "gene_name": "TNS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HBL0", "url": "https://www.uniprot.org/uniprotkb/Q9HBL0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20069572", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Involvement of arginine 78 of midkine in the high affinity binding to PTPzeta.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Maeda N, Ichihara-Tanaka K, Kimura T, Kadomatsu K, Muramatsu T, Noda M", "reference": { "type": "PubMed", "id": "10212223", "url": "https://pubmed.ncbi.nlm.nih.gov/10212223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UM73-1", "protein_name": "ALK tyrosine kinase receptor", "gene_name": "ALK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12025-1", "protein_name": "Midkine", "gene_name": "Mdk", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62656-1", "protein_name": "Receptor-type tyrosine-protein phosphatase zeta", "gene_name": "Ptprz1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P23471-1", "protein_name": "Receptor-type tyrosine-protein phosphatase zeta", "gene_name": "PTPRZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21246-1", "protein_name": "Pleiotrophin", "gene_name": "PTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21741-1", "protein_name": "Midkine", "gene_name": "MDK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UM73", "url": "https://www.uniprot.org/uniprotkb/Q9UM73" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 100, "end_pos": 100, "sequence_org": "R", "sequence_mut": "Q", "comment": "Decreases affinity binding to PTPRZ1. Decreases affinity binding to PTPRZ1; when associated with Q-105 and Q-106. Decreases neuron migration. Decreases neuron migration; when associated with Q-105 and Q-106.", "evidence": [ { "database": "UniProtKB", "id": "P12025", "url": "https://www.uniprot.org/uniprotkb/P12025" }, { "database": "PubMed", "id": "10212223", "url": "https://pubmed.ncbi.nlm.nih.gov/10212223" } ], "uniprot_canonical_ac": "P12025-1" }, { "start_pos": 105, "end_pos": 105, "sequence_org": "K", "sequence_mut": "Q", "comment": "Does not affect binding with PTPRZ1. Does not affect binding with PTPRZ1; when associated with Q-106. Does not affect positive regulation of neuron migration.", "evidence": [ { "database": "UniProtKB", "id": "P12025", "url": "https://www.uniprot.org/uniprotkb/P12025" }, { "database": "PubMed", "id": "10212223", "url": "https://pubmed.ncbi.nlm.nih.gov/10212223" } ], "uniprot_canonical_ac": "P12025-1" }, { "start_pos": 106, "end_pos": 106, "sequence_org": "K", "sequence_mut": "Q", "comment": "Does not affect binding with PTPRZ1. Does not affect binding with PTPRZ1; when associated with Q-105. Does not affect positive regulation of neuron migration.", "evidence": [ { "database": "UniProtKB", "id": "P12025", "url": "https://www.uniprot.org/uniprotkb/P12025" }, { "database": "PubMed", "id": "10212223", "url": "https://pubmed.ncbi.nlm.nih.gov/10212223" } ], "uniprot_canonical_ac": "P12025-1" } ], "record_id": "pubmed.10212223", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU20-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "FRS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52333-1", "protein_name": "Tyrosine-protein kinase JAK3", "gene_name": "JAK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40763-1", "protein_name": "Signal transducer and activator of transcription 3", "gene_name": "STAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": 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{ "database": "UniProtKB", "id": "Q9UM73", "url": "https://www.uniprot.org/uniprotkb/Q9UM73" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11121404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"Identification of anaplastic lymphoma kinase as a receptor for the growth factor pleiotrophin.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Stoica GE, Kuo A, Aigner A, Sunitha I, Souttou B, Malerczyk C, Caughey DJ, Wen D, Karavanov A, Riegel AT, Wellstein A", "reference": { "type": "PubMed", "id": "11278720", "url": "https://pubmed.ncbi.nlm.nih.gov/11278720" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UM73-1", "protein_name": "ALK tyrosine kinase receptor", "gene_name": "ALK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UXT8-1", "protein_name": "ALK and LTK ligand 1", "gene_name": "ALKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX46-1", "protein_name": "ALK and LTK ligand 2", "gene_name": "ALKAL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04198-1", "protein_name": "N-myc proto-oncogene protein", "gene_name": "MYCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU20-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "FRS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23471-1", "protein_name": "Receptor-type tyrosine-protein phosphatase zeta", "gene_name": "PTPRZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52333-1", "protein_name": "Tyrosine-protein kinase JAK3", "gene_name": "JAK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40763-1", "protein_name": "Signal transducer and activator of transcription 3", "gene_name": "STAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35568-1", "protein_name": "Insulin receptor substrate 1", "gene_name": "IRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21246-1", "protein_name": "Pleiotrophin", "gene_name": "PTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21741-1", "protein_name": "Midkine", "gene_name": "MDK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27986-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit alpha", "gene_name": "PIK3R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19174-1", "protein_name": "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1", "gene_name": "PLCG1", 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