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mutations that cause myoclonus-dystonia syndrome impair epsilon-sarcoglycan trafficking to the plasma membrane: modulation by ubiquitination and torsinA.", "journal": "Human molecular genetics", "date": "2007", "authors": "Esapa CT, Waite A, Locke M, Benson MA, Kraus M, McIlhinney RA, Sillitoe RV, Beesley PW, Blake DJ", "reference": { "type": "PubMed", "id": "17200151", "url": "https://pubmed.ncbi.nlm.nih.gov/17200151" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ER39-1", "protein_name": "Torsin-1A", "gene_name": "Tor1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70258-1", "protein_name": "Epsilon-sarcoglycan", "gene_name": "Sgce", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9ER39", "url": "https://www.uniprot.org/uniprotkb/Q9ER39" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { 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No effect on glycosylation.", "evidence": [ { "database": "UniProtKB", "id": "O70258", "url": "https://www.uniprot.org/uniprotkb/O70258" }, { "database": "PubMed", "id": "17200151", "url": "https://pubmed.ncbi.nlm.nih.gov/17200151" } ], "uniprot_canonical_ac": "O70258-1" } ], "record_id": "pubmed.17200151", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of the mouse tob2 gene.", "journal": "Gene", "date": "2000", "authors": "Ajima R, Ikematsu N, Ohsugi M, Yoshida Y, Yamamoto T", "reference": { "type": "PubMed", "id": "10940559", "url": "https://pubmed.ncbi.nlm.nih.gov/10940559" }, "referenced_glycans": [], 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MiR-5100 promotes osteogenic differentiation by targeting Tob2.", "journal": "Journal of bone and mineral metabolism", "date": "2017", "authors": "Wang H, Cui Y, Luan J, Zhou X, Li C, Li H, Shi L, Han J", "reference": { "type": "PubMed", "id": "27873073", "url": "https://pubmed.ncbi.nlm.nih.gov/27873073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JM55-1", "protein_name": "Protein Tob2", "gene_name": "Tob2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JM55", "url": "https://www.uniprot.org/uniprotkb/Q9JM55" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.27873073", "abstract": "", "glycosylation": [], 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neurobin/TMPRSS11c, a novel type II transmembrane serine protease that cleaves fibroblast growth factor-2 in vitro.", "journal": "The Biochemical journal", "date": "2008", "authors": "Stallmach R, Gloor SM", "reference": { "type": "PubMed", "id": "18215125", "url": "https://pubmed.ncbi.nlm.nih.gov/18215125" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1JRP2-1", "protein_name": "Transmembrane protease serine 11C", "gene_name": "Tmprss11c", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q1JRP2", "url": "https://www.uniprot.org/uniprotkb/Q1JRP2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 190, "end_pos": 191, "sequence_org": "RR", "sequence_mut": "AA", "comment": "Strongly reduced autocatalytic cleavage; when associated with A-196 and A-199. 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Slightly reduced autocatalytic cleavage; when associated with 190-A-A-191.", "evidence": [ { "database": "UniProtKB", "id": "Q1JRP2", "url": "https://www.uniprot.org/uniprotkb/Q1JRP2" }, { "database": "PubMed", "id": "18215125", "url": "https://pubmed.ncbi.nlm.nih.gov/18215125" } ], "uniprot_canonical_ac": "Q1JRP2-1" }, { "start_pos": 199, "end_pos": 199, "sequence_org": "K", "sequence_mut": "A", "comment": "Reduced autocatalytic cleavage. Strongly reduced autocatalytic cleavage; when associated with A-196. Strongly reduced autocatalytic cleavage; when associated with A-196 and 190-A-A-191.", "evidence": [ { "database": "UniProtKB", "id": "Q1JRP2", "url": "https://www.uniprot.org/uniprotkb/Q1JRP2" }, { "database": "PubMed", "id": "18215125", "url": "https://pubmed.ncbi.nlm.nih.gov/18215125" } ], "uniprot_canonical_ac": "Q1JRP2-1" }, { "start_pos": 381, "end_pos": 381, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes autocatalytic cleavage.", "evidence": [ { "database": "UniProtKB", "id": "Q1JRP2", "url": "https://www.uniprot.org/uniprotkb/Q1JRP2" }, { "database": "PubMed", "id": "18215125", "url": "https://pubmed.ncbi.nlm.nih.gov/18215125" } ], "uniprot_canonical_ac": "Q1JRP2-1" } ], "record_id": "pubmed.18215125", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Trinucleotide repeat containing 6a (Tnrc6a)-mediated microRNA function is required for development of yolk sac endoderm.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Jiang Z, Yu N, Kuang P, Chen M, Shao F, Martin G, Chui DH, Cardoso WV, Ai X, Lu J", "reference": { "type": "PubMed", "id": "22187428", "url": "https://pubmed.ncbi.nlm.nih.gov/22187428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UHK8-1", "protein_name": "Trinucleotide 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Efficient Gene Knockdown in Mouse Oocytes through Peptide Nanoparticle-Mediated SiRNA Transfection.", "journal": "PloS one", "date": "2016", "authors": "Jin Zhen, Li Ruichao, Zhou Chunxiang, Shi Liya, Zhang Xiaolan, Yang Zhixia, Zhang Dong", "reference": { "type": "PubMed", "id": "26974323", "url": "https://pubmed.ncbi.nlm.nih.gov/26974323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UWZ0-1", "protein_name": "Tripartite motif-containing protein 75", "gene_name": "Trim75", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3UWZ0", "url": "https://www.uniprot.org/uniprotkb/Q3UWZ0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.26974323", "abstract": "", 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Lixin, Ping Yue, Wang Chunsheng, Kong Qingran, Cai Wenpin, Yang Xu", "reference": { "type": "PubMed", "id": "38643284", "url": "https://pubmed.ncbi.nlm.nih.gov/38643284" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UWZ0-1", "protein_name": "Tripartite motif-containing protein 75", "gene_name": "Trim75", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3UWZ0", "url": "https://www.uniprot.org/uniprotkb/Q3UWZ0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38643284", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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genesis of the spleen.", "journal": "Nature", "date": "1994-04-21", "authors": "Roberts C W, Shutter J R, Korsmeyer S J", "reference": { "type": "PubMed", "id": "7908720", "url": "https://pubmed.ncbi.nlm.nih.gov/7908720" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43345-1", "protein_name": "T-cell leukemia homeobox protein 1", "gene_name": "Tlx1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P43345", "url": "https://www.uniprot.org/uniprotkb/P43345" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7908720", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Dev.", "date": "1993", "authors": "Raju K, Tang S, Dub\u00e9 I D, Kamel-Reid S, Bryce D M, Breitman M L", "reference": { "type": "PubMed", "id": "7908826", "url": "https://pubmed.ncbi.nlm.nih.gov/7908826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43345-1", "protein_name": "T-cell leukemia homeobox protein 1", "gene_name": "Tlx1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P43345", "url": "https://www.uniprot.org/uniprotkb/P43345" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7908826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Peng, Tong Wei, Band Hamid, Huang Danny T, Platanias Leonidas C, Zhang Zhong-Yin, Liu Yan", "reference": { "type": "PubMed", "id": "37756563", "url": "https://pubmed.ncbi.nlm.nih.gov/37756563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70274-1", "protein_name": "Protein tyrosine phosphatase type IVA 2", "gene_name": "Ptp4a2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70274", "url": "https://www.uniprot.org/uniprotkb/O70274" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37756563", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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[] } ] }, { "title": "Stasimon Contributes to the Loss of Sensory Synapses and Motor Neuron Death in a Mouse Model of Spinal Muscular Atrophy.", "journal": "Cell reports", "date": "2019", "authors": "Simon CM, Van Alstyne M, Lotti F, Bianchetti E, Tisdale S, Watterson DM, Mentis GZ, Pellizzoni L", "reference": { "type": "PubMed", "id": "31851921", "url": "https://pubmed.ncbi.nlm.nih.gov/31851921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K1A5-1", "protein_name": "Transmembrane protein 41B", "gene_name": "Tmem41b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8K1A5", "url": "https://www.uniprot.org/uniprotkb/Q8K1A5" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.31851921", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-scale CRISPR screen identifies TMEM41B as a multi-function host factor required for coronavirus replication.", "journal": "PLoS pathogens", "date": "2021", "authors": "Sun L, Zhao C, Fu Z, Fu Y, Su Z, Li Y, Zhou Y, Tan Y, Li J, Xiang Y, Nie X, Zhang J, Liu F, Zhao S, Xie S, Peng G", "reference": { "type": "PubMed", "id": "34871328", "url": "https://pubmed.ncbi.nlm.nih.gov/34871328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K1A5-1", "protein_name": 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pancreatic tumorigenesis.", "journal": "Genes & development", "date": "2015", "authors": "Wang L, Yang H, Abel EV, Ney GM, Palmbos PL, Bednar F, Zhang Y, Leflein J, Waghray M, Owens S, Wilkinson JE, Prasad J, Ljungman M, Rhim AD, Pasca di Magliano M, Simeone DM", "reference": { "type": "PubMed", "id": "25593307", "url": "https://pubmed.ncbi.nlm.nih.gov/25593307" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R2Q0-1", "protein_name": "Tripartite motif-containing protein 29", "gene_name": "Trim29", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R2Q0", "url": "https://www.uniprot.org/uniprotkb/Q8R2Q0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25593307", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Chem.", "date": "1994", "authors": "Qabar AN, Lin Z, Wolf FW, O'Shea KS, Lawler J, Dixit VM", "reference": { "type": "PubMed", "id": "8288588", "url": "https://pubmed.ncbi.nlm.nih.gov/8288588" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05895-1", "protein_name": "Thrombospondin-3", "gene_name": "Thbs3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q05895", "url": "https://www.uniprot.org/uniprotkb/Q05895" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8288588", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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