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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The synthesis of xyloglucan, an abundant plant cell wall polysaccharide, requires CSLC function.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2020-08-18", "authors": "Kim Sang-Jin, Chandrasekar Balakumaran, Rea Anne C, Danhof Linda, Zemelis-Durfee Starla, Thrower Nicholas, Shepard Zachary S, Pauly Markus, Brandizzi Federica, Keegstra Kenneth", "reference": { "type": "PubMed", "id": "32737163", "url": "https://pubmed.ncbi.nlm.nih.gov/32737163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZQB9-1", "protein_name": "Probable xyloglucan glycosyltransferase 12", "gene_name": "CSLC12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJP4-1", "protein_name": "Xyloglucan glycosyltransferase 4", "gene_name": "CSLC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB75-1", "protein_name": "Probable xyloglucan glycosyltransferase 5", "gene_name": "CSLC5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJA2-1", "protein_name": "Probable xyloglucan 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"tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZQC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZQC6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17938130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-12", "authors": "Brown David M, Goubet Florence, Wong Vicky W, Goodacre Royston, Stephens Elaine, Dupree Paul, Turner Simon R", "reference": { "type": "PubMed", "id": "17944810", "url": "https://pubmed.ncbi.nlm.nih.gov/17944810" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZQC6-1", "protein_name": "Beta-1,4-xylosyltransferase IRX9", "gene_name": "IRX9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L707-1", "protein_name": "Beta-1,4-xylosyltransferase IRX14", "gene_name": "IRX14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FH36-1", "protein_name": "Probable galacturonosyltransferase 12", "gene_name": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Site-directed mutagenesis of IRX9, IRX9L and IRX14 proteins involved in xylan biosynthesis: glycosyltransferase activity is not required for IRX9 function in Arabidopsis.", "journal": "PloS one", "date": "2014", "authors": "Ren Yanfang, Hansen Sara Fasmer, Ebert Berit, Lau Jane, Scheller Henrik Vibe", "reference": { "type": "PubMed", "id": "25118690", "url": "https://pubmed.ncbi.nlm.nih.gov/25118690" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZQC6-1", "protein_name": "Beta-1,4-xylosyltransferase IRX9", "gene_name": "IRX9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L707-1", "protein_name": "Beta-1,4-xylosyltransferase IRX14", "gene_name": "IRX14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZQC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZQC6" } ], "common_name": 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"Complements irregular xylem phenotype of irx9 mutant.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZQC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZQC6" }, { "database": "PubMed", "id": "25118690", "url": "https://pubmed.ncbi.nlm.nih.gov/25118690" } ], "uniprot_canonical_ac": "Q9ZQC6-1" }, { "start_pos": 252, "end_pos": 252, "sequence_org": "E", "sequence_mut": "A", "comment": "Complements irregular xylem phenotype of irx9 mutant.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZQC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZQC6" }, { "database": "PubMed", "id": "25118690", "url": "https://pubmed.ncbi.nlm.nih.gov/25118690" } ], "uniprot_canonical_ac": "Q9ZQC6-1" }, { "start_pos": 333, "end_pos": 333, "sequence_org": "C", "sequence_mut": "A", "comment": "Complements irregular xylem phenotype of irx9 mutant.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZQC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZQC6" }, { "database": "PubMed", "id": "25118690", "url": 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"journal": "The Plant journal : for cell and molecular biology", "date": "2001-11", "authors": "Munekage Y, Takeda S, Endo T, Jahns P, Hashimoto T, Shikanai T", "reference": { "type": "PubMed", "id": "11722777", "url": "https://pubmed.ncbi.nlm.nih.gov/11722777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZR03-1", "protein_name": "Cytochrome b6-f complex iron-sulfur subunit, chloroplastic", "gene_name": "petC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR03", "url": "https://www.uniprot.org/uniprotkb/Q9ZR03" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 194, "end_pos": 194, "sequence_org": "P", "sequence_mut": "L", "comment": "In pgr1; reduces electron transfer from cyt b6/f to photosystem I at high light intensity, and shifts 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Effects on photosynthesis, thylakoid protein composition, and nuclear chloroplast gene expression.", "journal": "Plant physiology", "date": "2003-09", "authors": "Maiwald Daniela, Dietzmann Angela, Jahns Peter, Pesaresi Paolo, Joliot Pierre, Joliot Anne, Levin Joshua Z, Salamini Francesco, Leister Dario", "reference": { "type": "PubMed", "id": "12970486", "url": "https://pubmed.ncbi.nlm.nih.gov/12970486" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZR03-1", "protein_name": "Cytochrome b6-f complex iron-sulfur subunit, chloroplastic", "gene_name": "petC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSS9-1", "protein_name": "ATP synthase subunit delta, chloroplastic", "gene_name": "ATPD", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR03", "url": "https://www.uniprot.org/uniprotkb/Q9ZR03" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12970486", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PGRL1 is the elusive ferredoxin-plastoquinone reductase in photosynthetic cyclic electron flow.", "journal": "Mol. Cell", "date": "2013", "authors": "Hertle Alexander P, Blunder Thomas, Wunder Tobias, Pesaresi Paolo, Pribil Mathias, Armbruster Ute, Leister Dario", "reference": { "type": "PubMed", "id": "23290914", "url": "https://pubmed.ncbi.nlm.nih.gov/23290914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZR03-1", "protein_name": "Cytochrome b6-f complex iron-sulfur subunit, chloroplastic", "gene_name": "petC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H112-1", "protein_name": "PGR5-like protein 1A, chloroplastic", "gene_name": "PGR5-LIKE; PGRL1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYC7-1", "protein_name": "PGR5-like protein 1B, chloroplastic", "gene_name": "PGRL1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL05-1", "protein_name": "Protein PROTON GRADIENT REGULATION 5, chloroplastic", "gene_name": "PGR5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR03", "url": "https://www.uniprot.org/uniprotkb/Q9ZR03" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 183, "end_pos": 183, "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of photosynthetic cyclic electron flow, loss of formation of oxidized monomer, and decreased FCC binding and dimer formation with PGR5. 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Altered stability and protease accessibility of the mitochondrial complex to which it localizes. Impaired mitochondrial biogenesis, mitochondrial size, lipid content and composition, protein import and abundance, and respiratory capacity. Higher tolerance to drought stress, but early senescence phenotype. Reduced expression of DGS1, MIC60, TOM40 and TOM20-2 proteins but accumulation of petC/RISP. 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Chem.", "date": "2006", "authors": "Chen Yan M, Ferrar Tony S, Lohmeier-Vogel Elke M, Lohmeir-Vogel Elke, Morrice Nick, Mizuno Yutaka, Berenger Byron, Ng Kenneth K S, Muench Douglas G, Moorhead Greg B G", "reference": { "type": "PubMed", "id": "16377628", "url": "https://pubmed.ncbi.nlm.nih.gov/16377628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZST4-1", "protein_name": "Nitrogen regulatory protein P-II homolog", "gene_name": "GLB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCL7-1", "protein_name": "Acetylglutamate kinase, chloroplastic", "gene_name": "NAGK", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZST4", "url": "https://www.uniprot.org/uniprotkb/Q9ZST4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16377628", "abstract": 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[] } ] }, { "title": "Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation.", "journal": "Development (Cambridge, England)", "date": "2005-09", "authors": "Nagpal Punita, Ellis Christine M, Weber Hans, Ploense Sara E, Barkawi Lana S, Guilfoyle Thomas J, Hagen Gretchen, Alonso Jos\u00e9 M, Cohen Jerry D, Farmer Edward E, Ecker Joseph R, Reed Jason W", "reference": { "type": "PubMed", "id": "16107481", "url": "https://pubmed.ncbi.nlm.nih.gov/16107481" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZTX8-1", "protein_name": "Auxin response factor 6", "gene_name": "ARF6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGV1-1", "protein_name": "Auxin response factor 8", "gene_name": "ARF8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZTX8", "url": "https://www.uniprot.org/uniprotkb/Q9ZTX8" } ], 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction.", "journal": "Development", "date": "2006", "authors": "Wu Miin-Feng, Tian Qing, Reed Jason W", "reference": { "type": "PubMed", "id": "17021043", "url": "https://pubmed.ncbi.nlm.nih.gov/17021043" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZTX8-1", "protein_name": "Auxin response factor 6", "gene_name": "ARF6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGV1-1", "protein_name": "Auxin response factor 8", "gene_name": "ARF8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZTX8", "url": "https://www.uniprot.org/uniprotkb/Q9ZTX8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17021043", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two Arabidopsis Receptor-like Cytoplasmic Kinases SZE1 and SZE2 Associate with the ZAR1-ZED1 Complex and Are Required for Effector-Triggered Immunity.", "journal": "Molecular plant", "date": "2019-07-01", "authors": "Liu Cheng, Cui Dayong, Zhao Jingbo, Liu Na, Wang Bo, Liu Jing, Xu Enjun, Hu Zhubing, Ren Dongtao, Tang Dingzhong, Hu Yuxin", "reference": { "type": "PubMed", "id": "30947022", "url": "https://pubmed.ncbi.nlm.nih.gov/30947022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZU46-1", "protein_name": "Receptor protein kinase-like protein ZAR1", "gene_name": "ZAR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L617-1", "protein_name": "Serine/threonine-protein kinase SZE1", "gene_name": "SZE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGB6-1", "protein_name": "Non-functional pseudokinase ZED1", "gene_name": "ZED1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFL6-1", "protein_name": "Inactive serine/threonine-protein kinase BKN2", "gene_name": "BKN2; SZE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZU46", "url": "https://www.uniprot.org/uniprotkb/Q9ZU46" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 221, "end_pos": 221, "sequence_org": "G", "sequence_mut": "E", "comment": "Lost ability to trigger hypersensitive response (HR).", "evidence": [ { "database": "UniProtKB", "id": "Q8L617", "url": "https://www.uniprot.org/uniprotkb/Q8L617" }, { "database": "PubMed", "id": "30947022", "url": "https://pubmed.ncbi.nlm.nih.gov/30947022" } ], "uniprot_canonical_ac": "Q8L617-1" }, { "start_pos": 2, "end_pos": 2, "sequence_org": "G", "sequence_mut": "A", "comment": "Abolished N-terminal myristoylation leading to disrupted plasma membrane localization and inhability to suppress zed1-D-activated immunity. Lost ability to trigger hypersensitive response (HR).", "evidence": [ { "database": "UniProtKB", "id": "Q8L617", "url": "https://www.uniprot.org/uniprotkb/Q8L617" }, { "database": "PubMed", "id": "30947022", "url": "https://pubmed.ncbi.nlm.nih.gov/30947022" } ], "uniprot_canonical_ac": "Q8L617-1" }, { "start_pos": 71, "end_pos": 71, "sequence_org": "K", "sequence_mut": "E", "comment": "Abolished autophosphorylation activity. Reduced ability to trigger hypersensitive response (HR).", "evidence": [ { "database": "UniProtKB", "id": "Q8L617", "url": "https://www.uniprot.org/uniprotkb/Q8L617" }, { "database": "PubMed", "id": "30947022", "url": "https://pubmed.ncbi.nlm.nih.gov/30947022" } ], "uniprot_canonical_ac": "Q8L617-1" }, { "start_pos": 173, "end_pos": 173, "sequence_org": "N", "sequence_mut": "S", "comment": "In zed1-D; normal growth of plants grown below 22 degrees Celsius, but high temperature (above 22 degrees Celsius)-dependent RPP13L4/ZAR1-influenced autoimmunity and growth retardation. Plants cultivated above 23 degrees Celsius are dwarf with crinkled lamina, shortened petiole, reduced pedicel length and silique numbers, increased branches, severely shortened inflorescence stem and clustered siliques. These phenotypes are associated with inhibited cell elongation and/or expansion and disturbed differentiation of trichomes and stomata, disorganized interfascicular fibers and fewer pith tissues in inflorescence stems as well as increased lignin deposition in the vasculatures. Elevated reactive oxygen species (ROS) content and extensive cell death as well as reduced expression of pathogenesis related genes (e.g. PR1 and PR2) but accumulation of SNC1 when grown at 25 degrees Celsius. The high temperature-induced autoimmune phenotype is blocked in the double mutant zed1-D zar1-3. Stronger binding activity with RPP13L4/ZAR1. Confined to the cytosol. Fully rescued by the over-expression of RKS1/ZRK1 and ZRK12, and partially by the over-expression of ZRK4, ZRK10, ZRK13 and ZRK14. The double mutants zed1-D snc1-11 and zed1-D nahG have restored normal growth phenotypes and rescued autoimmunity defects. These pleiotropic phenotypes are suppressed in plants lacking SZE1 and SZE2.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" }, { "database": "PubMed", "id": "28499073", "url": "https://pubmed.ncbi.nlm.nih.gov/28499073" }, { "database": "PubMed", "id": "30947022", "url": "https://pubmed.ncbi.nlm.nih.gov/30947022" } ], "uniprot_canonical_ac": "Q8LGB6-1" }, { "start_pos": 231, "end_pos": 231, "sequence_org": "D", "sequence_mut": "N", "comment": "In zed1-4; loss of function, impaired interaction with RPP13L4/ZAR1 and Pseudomonas syringae type III effector HopZ1a, and completely abrogated hypersensitive response (HR).", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" }, { "database": "PubMed", "id": "28652264", "url": "https://pubmed.ncbi.nlm.nih.gov/28652264" }, { "database": "PubMed", "id": "24170858", "url": "https://pubmed.ncbi.nlm.nih.gov/24170858" }, { "database": 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"journal": "Science (New York, N.Y.)", "date": "2006-11-24", "authors": "Kim Sun A, Punshon Tracy, Lanzirotti Antonio, Li Liangtao, Alonso Jos\u00e9 M, Ecker Joseph R, Kaplan Jerry, Guerinot Mary Lou", "reference": { "type": "PubMed", "id": "17082420", "url": "https://pubmed.ncbi.nlm.nih.gov/17082420" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZUA5-1", "protein_name": "Vacuolar iron transporter 1", "gene_name": "VIT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUA5", "url": "https://www.uniprot.org/uniprotkb/Q9ZUA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17082420", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis.", "journal": "Plant Physiol.", "date": "2004", "authors": "Navarro Lionel, Zipfel Cyril, Rowland Owen, Keller Ingo, Robatzek Silke, Boller Thomas, Jones Jonathan D G", "reference": { "type": "PubMed", "id": "15181213", "url": "https://pubmed.ncbi.nlm.nih.gov/15181213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZUF4-1", "protein_name": "Serine/threonine-protein kinase RIPK", "gene_name": "RIPK", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZG2-1", "protein_name": "Protein HYPER-SENSITIVITY-RELATED 4", "gene_name": "HSR4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUF4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" 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Nozomi, Sasaki-Sekimoto Yuko, Obayashi Takeshi, Kikuta Akihiro, Kobayashi Koichi, Ainai Takayuki, Yagi Kaori, Sakurai Nozomu, Suzuki Hideyuki, Masuda Tatsuru, Takamiya Ken-Ichiro, Shibata Daisuke, Kobayashi Yuichi, Ohta Hiroyuki", "reference": { "type": "PubMed", "id": "16258017", "url": "https://pubmed.ncbi.nlm.nih.gov/16258017" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZUF4-1", "protein_name": "Serine/threonine-protein kinase RIPK", "gene_name": "RIPK", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K2R6-1", "protein_name": "Calmodulin-binding protein 60 G", "gene_name": "CBP60G", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUF4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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thaliana: cDNA cloning, characterization, and functional expression of a myrcene/(E)-beta-ocimene synthase.", "journal": "Archives of biochemistry and biophysics", "date": "2000-03-15", "authors": "Bohlmann J, Martin D, Oldham N J, Gershenzon J", "reference": { "type": "PubMed", "id": "10700382", "url": "https://pubmed.ncbi.nlm.nih.gov/10700382" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZUH4-1", "protein_name": "Tricyclene synthase, chloroplastic", "gene_name": "TPS10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUH4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUH4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10700382", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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Ecol.", "date": "2001", "authors": "Van Poecke R M, Posthumus M A, Dicke M", "reference": { "type": "PubMed", "id": "11710601", "url": "https://pubmed.ncbi.nlm.nih.gov/11710601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZUH4-1", "protein_name": "Tricyclene synthase, chloroplastic", "gene_name": "TPS10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A4FVP2-1", "protein_name": "Terpenoid synthase 3, chloroplastic", "gene_name": "TPS03", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUH4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUH4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11710601", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Nakamura A, Suzuki T, Ueguchi C, Mizuno T", "reference": { "type": "PubMed", "id": "9482949", "url": "https://pubmed.ncbi.nlm.nih.gov/9482949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZWS7-1", "protein_name": "Two-component response regulator ARR7", "gene_name": "ARR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82798-1", "protein_name": "Two-component response regulator ARR4", "gene_name": "ARR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWS9-1", "protein_name": "Two-component response regulator ARR3", "gene_name": "ARR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWS6-1", "protein_name": "Two-component response regulator ARR6", "gene_name": "ARR6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB04-1", "protein_name": "Two-component response regulator ARR5", "gene_name": "ARR5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 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[] } ] }, { "title": "Expression of Arabidopsis response regulator homologs is induced by cytokinins and nitrate.", "journal": "FEBS Lett.", "date": "1998", "authors": "Taniguchi M, Kiba T, Sakakibara H, Ueguchi C, Mizuno T, Sugiyama T", "reference": { "type": "PubMed", "id": "9662428", "url": "https://pubmed.ncbi.nlm.nih.gov/9662428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ZWS7-1", "protein_name": "Two-component response regulator ARR7", "gene_name": "ARR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82798-1", "protein_name": "Two-component response regulator ARR4", "gene_name": "ARR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWS9-1", "protein_name": "Two-component response regulator ARR3", "gene_name": "ARR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWS6-1", "protein_name": "Two-component response regulator ARR6", "gene_name": "ARR6", "tax_name": "Mouse-ear cress" }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis.", "journal": "Plant Physiol.", "date": "2011", "authors": "Guo Ya-Long, Fitz Joffrey, Schneeberger Korbinian, Ossowski Stephan, Cao Jun, Weigel Detlef", "reference": { "type": "PubMed", "id": "21810963", "url": "https://pubmed.ncbi.nlm.nih.gov/21810963" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B6IDH8-1", "protein_name": "Protein SOB FIVE-LIKE 6", "gene_name": "SOFL6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ65-1", "protein_name": "Basic leucine zipper 4", "gene_name": "BZIP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SM02-1", "protein_name": "Squalene epoxidase 1", "gene_name": "SQE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "B6IDH8", "url": 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promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses.", "journal": "Plant Physiol.", "date": "2011", "authors": "Bourdenx Brice, Bernard Am\u00e9lie, Domergue Fr\u00e9d\u00e9ric, Pascal St\u00e9phanie, L\u00e9ger Amandine, Roby Dominique, Pervent Marjorie, Vile Denis, Haslam Richard P, Napier Johnathan A, Lessire Ren\u00e9, Joub\u00e8s J\u00e9r\u00f4me", "reference": { "type": "PubMed", "id": "21386033", "url": "https://pubmed.ncbi.nlm.nih.gov/21386033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4IR05-1", "protein_name": "Protein CER1-like 2", "gene_name": "F13M22.20; F13M22_20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HVX7-1", "protein_name": "Protein CER1-like 1", "gene_name": "T7I23.9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1Z0-1", "protein_name": "Very-long-chain aldehyde decarbonylase CER3", "gene_name": "CER3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HVY0-1", "protein_name": "Very-long-chain aldehyde decarbonylase CER1", "gene_name": "CER1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IR05", "url": "https://www.uniprot.org/uniprotkb/F4IR05" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21386033", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"evidence": [ { "database": "UniProtKB", "id": "F4HVX7", "url": "https://www.uniprot.org/uniprotkb/F4HVX7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8718622", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Recruitment of a ribosomal release factor for light- and stress-dependent regulation of petB transcript stability in Arabidopsis chloroplasts.", "journal": "Plant Cell", "date": "2011", "authors": "Stoppel Rhea, Lezhneva Lina, Schwenkert Serena, Torabi Salar, Felder Susanne, Meierhoff Karin, Westhoff Peter, Meurer J\u00f6rg", "reference": { "type": "PubMed", "id": "21771930", "url": "https://pubmed.ncbi.nlm.nih.gov/21771930" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F4I532-1", "protein_name": "Peptide chain release factor PrfB2, chloroplastic", "gene_name": "PRFB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J264-1", "protein_name": "Peptide chain release factor PrfB3, chloroplastic", "gene_name": "PRFB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVY0-1", "protein_name": "Peptide chain release factor PrfB1, chloroplastic", "gene_name": "HCF109; PRFB1", "tax_name": "Mouse-ear cress" } ], 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