[ { "title": "Proof-of-Concept Method to Study Uncharacterized Methyltransferases Using PRDM15.", "journal": "International journal of molecular sciences", "date": "2023-01-10", "authors": "Zhao Li-Na, Guccione Ernesto, Kaldis Philipp", "reference": { "type": "PubMed", "id": "36674842", "url": "https://pubmed.ncbi.nlm.nih.gov/36674842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P57071-7", "protein_name": "PR domain zinc finger protein 15", "gene_name": "PRDM15", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P57071", "url": "https://www.uniprot.org/uniprotkb/P57071" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36674842", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the system L amino acid transporter in T24 human bladder carcinoma cells.", "journal": "Biochimica et biophysica acta", "date": "2002", "authors": "Kim DK, Kanai Y, Choi HW, Tangtrongsup S, Chairoungdua A, Babu E, Tachampa K, Anzai N, Iribe Y, Endou H", "reference": { "type": "PubMed", "id": "12225859", "url": "https://pubmed.ncbi.nlm.nih.gov/12225859" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4J6C6-1", "protein_name": "Prolyl endopeptidase-like", "gene_name": "PREPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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causes a novel myasthenic syndrome.", "journal": "Neurology", "date": "2014", "authors": "Regal L, Shen XM, Selcen D, Verhille C, Meulemans S, Creemers JW, Engel AG", "reference": { "type": "PubMed", "id": "24610330", "url": "https://pubmed.ncbi.nlm.nih.gov/24610330" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4J6C6-1", "protein_name": "Prolyl endopeptidase-like", "gene_name": "PREPL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q4J6C6", "url": "https://www.uniprot.org/uniprotkb/Q4J6C6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24610330", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Commun.", "date": "2003", "authors": "Savagner F, Mirebeau D, Jacques C, Guyetant S, Morgan C, Franc B, Reynier P, Malthiery Y", "reference": { "type": "PubMed", "id": "14550271", "url": "https://pubmed.ncbi.nlm.nih.gov/14550271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5VV67-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator-related protein 1", "gene_name": "PPRC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5VV67", "url": "https://www.uniprot.org/uniprotkb/Q5VV67" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14550271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C-terminal Src kinase-mediated EPIYA phosphorylation of Pragmin creates a feed-forward C-terminal Src kinase activation loop that promotes cell motility.", "journal": "Cancer Sci.", "date": "2016", "authors": "Senda Y, Murata-Kamiya N, Hatakeyama M", "reference": { "type": "PubMed", "id": "27116701", "url": "https://pubmed.ncbi.nlm.nih.gov/27116701" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86YV5-1", "protein_name": "Inactive tyrosine-protein kinase PRAG1", "gene_name": "PRAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "D3ZMK9-1", "protein_name": "Inactive tyrosine-protein kinase PRAG1", "gene_name": "Prag1", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 238, "end_pos": 238, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by CSK", "evidence": [ { "database": "UniProtKB", "id": "D3ZMK9", "url": "https://www.uniprot.org/uniprotkb/D3ZMK9" }, { "database": "iPTMnet", "id": "D3ZMK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZMK9" }, { "database": "PubMed", "id": "27116701", "url": "https://pubmed.ncbi.nlm.nih.gov/27116701" } ], "site_lbl": "Tyr238", "uniprot_canonical_ac": "D3ZMK9-1" }, { "start_pos": 343, "end_pos": 343, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by CSK", "evidence": [ { "database": "UniProtKB", "id": "D3ZMK9", "url": "https://www.uniprot.org/uniprotkb/D3ZMK9" }, { "database": "iPTMnet", "id": "D3ZMK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZMK9" }, { "database": "PubMed", "id": "27116701", "url": "https://pubmed.ncbi.nlm.nih.gov/27116701" } ], "site_lbl": "Tyr343", "uniprot_canonical_ac": "D3ZMK9-1" }, { "start_pos": 391, "end_pos": 391, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by CSK", "evidence": [ { "database": "UniProtKB", "id": "D3ZMK9", "url": "https://www.uniprot.org/uniprotkb/D3ZMK9" }, { "database": "iPTMnet", "id": "D3ZMK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZMK9" }, { "database": "PubMed", "id": "27116701", "url": "https://pubmed.ncbi.nlm.nih.gov/27116701" }, { "database": "PubMed", "id": "29503074", "url": "https://pubmed.ncbi.nlm.nih.gov/29503074" }, { "database": "PubMed", "id": "21873224", "url": "https://pubmed.ncbi.nlm.nih.gov/21873224" } ], "site_lbl": "Tyr391", "uniprot_canonical_ac": "D3ZMK9-1" } ], "record_id": "pubmed.27116701", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of SgK223 pseudokinase reveals novel mechanisms of homotypic and heterotypic association.", "journal": "Nature communications", "date": "2017", "authors": "Patel O, Griffin MDW, Panjikar S, Dai W, Ma X, Chan H, Zheng C, Kropp A, Murphy 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Decreases oligomerization. Decreases interaction with PEAK1.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 1271, "end_pos": 1271, "sequence_org": "F", "sequence_mut": "A", "comment": "Decreases homodimerization. Decreases interaction with PEAK1.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 1278, "end_pos": 1278, "sequence_org": "R", "sequence_mut": "A", "comment": "Decreases homodimerization.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 1282, "end_pos": 1282, "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on homodimerization. Decreases oligomerization. Decreases interaction with PEAK1. No effect on cell migration.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 1366, "end_pos": 1366, "sequence_org": "F", "sequence_mut": "A", "comment": "Decreases homodimerization. Abolished interaction with PEAK1. Decreases cell migration.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 1382, "end_pos": 1382, "sequence_org": "W", "sequence_mut": "A", "comment": "Decreases homodimerization. Abolished interaction with PEAK1. Decreases cell migration.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 955, "end_pos": 955, "sequence_org": "L", "sequence_mut": "A", "comment": "Decreases homodimerization. Abolished interaction with PEAK1. No effect on cell migration.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 966, "end_pos": 966, "sequence_org": "L", "sequence_mut": "A", "comment": "Decreases homodimerization. Abolished interaction with PEAK1. Decreases cell migration.", "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q86YV5-1" }, { "start_pos": 1609, "end_pos": 1609, "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on interaction with PRAG1.", "evidence": [ { "database": "UniProtKB", "id": "Q9H792", "url": "https://www.uniprot.org/uniprotkb/Q9H792" }, { "database": "PubMed", "id": "29079850", "url": "https://pubmed.ncbi.nlm.nih.gov/29079850" } ], "uniprot_canonical_ac": "Q9H792-1" } ], "record_id": "pubmed.29079850", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dimerization of the Pragmin Pseudo-Kinase Regulates Protein Tyrosine Phosphorylation.", "journal": "Structure (London, England : 1993)", "date": "2018", "authors": "Lecointre C, Simon V, Kerneur C, Allemand F, Fournet A, Montarras I, Pons JL, Gelin M, Brignatz C, Urbach S, Labesse G, Roche S", "reference": { "type": "PubMed", "id": "29503074", "url": "https://pubmed.ncbi.nlm.nih.gov/29503074" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86YV5-1", "protein_name": "Inactive tyrosine-protein kinase PRAG1", "gene_name": "PRAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "D3ZMK9-1", "protein_name": "Inactive tyrosine-protein kinase PRAG1", "gene_name": "Prag1", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1021, "end_pos": 1021, "sequence_org": "Q", "sequence_mut": "E", "comment": "No ATP-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "D3ZMK9", "url": "https://www.uniprot.org/uniprotkb/D3ZMK9" }, { "database": "PubMed", "id": "29503074", "url": "https://pubmed.ncbi.nlm.nih.gov/29503074" } ], "uniprot_canonical_ac": "D3ZMK9-1" }, { "start_pos": 1329, "end_pos": 1329, "sequence_org": "A", "sequence_mut": "E", "comment": "Strong reduction of homodimerization; Does not affect PRAG1-CSK complex formation. 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Does not affect PRAG1-induced protein tyrosine phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "D3ZMK9", "url": "https://www.uniprot.org/uniprotkb/D3ZMK9" }, { "database": "PubMed", "id": "29503074", "url": "https://pubmed.ncbi.nlm.nih.gov/29503074" } ], "uniprot_canonical_ac": "D3ZMK9-1" } ], "phosphorylation": [ { "start_pos": 391, "end_pos": 391, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by CSK", "evidence": [ { "database": "UniProtKB", "id": "D3ZMK9", "url": "https://www.uniprot.org/uniprotkb/D3ZMK9" }, { "database": "iPTMnet", "id": "D3ZMK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZMK9" }, { "database": "PubMed", "id": "27116701", "url": "https://pubmed.ncbi.nlm.nih.gov/27116701" }, { "database": "PubMed", "id": "29503074", "url": "https://pubmed.ncbi.nlm.nih.gov/29503074" }, { "database": "PubMed", "id": "21873224", "url": "https://pubmed.ncbi.nlm.nih.gov/21873224" } ], 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by hAMSCs secretome through suppression of tyrosine phosphorylation of SGK223 (at Y411 site), c-Src (at Y416, Y530 sites), AKT activity, and JAK1/Stat3 signaling.", "journal": "Medical oncology (Northwood, London, England)", "date": "2022", "authors": "Safari F, Shafiee Nejad N, Aghaei Nejad A", "reference": { "type": "PubMed", "id": "35059869", "url": "https://pubmed.ncbi.nlm.nih.gov/35059869" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86YV5-1", "protein_name": "Inactive tyrosine-protein kinase PRAG1", "gene_name": "PRAG1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86YV5", "url": "https://www.uniprot.org/uniprotkb/Q86YV5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35059869", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"The proline-rich acidic protein is epigenetically regulated and inhibits growth of cancer cell lines.", "journal": "Cancer research", "date": "2003-10-15", "authors": "Zhang Jinqiu, Wong Hangyee, Ramanan Sriram, Cheong Denis, Leong Adrian, Hooi Shing Chuan", "reference": { "type": "PubMed", "id": "14583459", "url": "https://pubmed.ncbi.nlm.nih.gov/14583459" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96NZ9-1", "protein_name": "Proline-rich acidic protein 1", "gene_name": "PRAP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96NZ9", "url": "https://www.uniprot.org/uniprotkb/Q96NZ9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14583459", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Hepatol.", "date": "2020", "authors": "Wolfarth AA, Liu X, Darby TM, Boyer DJ, Spizman JB, Owens JA, Chandrasekharan B, Naudin CR, Hanley KZ, Robinson BS, Ortlund EA, Jones RM, Neish AS", "reference": { "type": "PubMed", "id": "32629119", "url": "https://pubmed.ncbi.nlm.nih.gov/32629119" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96NZ9-1", "protein_name": "Proline-rich acidic protein 1", "gene_name": "PRAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80XD8-1", "protein_name": "Proline-rich acidic protein 1", "gene_name": "Prap1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96NZ9", "url": "https://www.uniprot.org/uniprotkb/Q96NZ9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32629119", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomic expression analysis of surgical human colorectal cancer tissues: up-regulation of PSB7, PRDX1, and SRP9 and hypoxic adaptation in cancer.", "journal": "J. Proteome Res.", "date": "2008", "authors": "Rho Jung-hyun, Qin Shuzhen, Wang Julia Y, Roehrl Michael H A", "reference": { "type": "PubMed", "id": "18549262", "url": "https://pubmed.ncbi.nlm.nih.gov/18549262" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99436-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PSMB7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q99436", "url": "https://www.uniprot.org/uniprotkb/Q99436" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18549262", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Jan C, Akker Peter C, Diercks Gilles F H, Bolling Maria C, Waisfisz Quinten, Mensenkamp Arjen R, Balk Jesper A, Zwart Rob, Postma Alex V, Meijers-Heijboer Hanne E J, Moorselaar R Jeroen A, Wolthuis Rob M F, Houweling Arjan C", "reference": { "type": "PubMed", "id": "36440963", "url": "https://pubmed.ncbi.nlm.nih.gov/36440963" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQV6-3", "protein_name": "PR domain zinc finger protein 10", "gene_name": "PRDM10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQV6", "url": "https://www.uniprot.org/uniprotkb/Q9NQV6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36440963", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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