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Immunol.", "date": "2016", "authors": "Dee Christopher T, Nagaraju Raghavendar T, Athanasiadis Emmanouil I, Gray Caroline, Fernandez Del Ama Laura, Johnston Simon A, Secombes Christopher J, Cvejic Ana, Hurlstone Adam F L", "reference": { "type": "PubMed", "id": "27694495", "url": "https://pubmed.ncbi.nlm.nih.gov/27694495" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M1PFH9-1", "protein_name": "Zinc finger and BTB domain-containing protein 7B", "gene_name": "zbtb7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7G2-1", "protein_name": "CD4-2 molecule, tandem duplicate 2 precursor", "gene_name": "cd4-2.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9K8-1", "protein_name": "CD4-2 molecule, tandem duplicate 1 precursor", "gene_name": "cd4-2.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M1PFH9", "url": 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Teratol.", "date": "2020", "authors": "Wang Dongmei, Yang LongEn, Wang Jingtao, Hu Guojun, Liu ZiYuan, Yan Dongni, Serikuly Nazar, Alpyshov Erik T, Demin Konstantin A, Galstyan David S, Strekalova Tatiana, de Abreu Murilo S, Amstislavskaya Tamara G, Kalueff Allan V", "reference": { "type": "PubMed", "id": "32240749", "url": "https://pubmed.ncbi.nlm.nih.gov/32240749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A3K7-1", "protein_name": "Complement C4-B", "gene_name": "c4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJK5-1", "protein_name": "Epithelial membrane protein 1", "gene_name": "emp1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB13A3K7", "url": "https://www.uniprot.org/uniprotkb/A0AB13A3K7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32240749", 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Cell. 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Genomics", "date": "2011", "authors": "Lam Siew Hong, Lee Serene G P, Lin Chin Y, Thomsen Jane S, Fu Pan Y, Murthy Karuturi R K, Li Haixia, Govindarajan Kunde R, Nick Lin C H, Bourque Guillaume, Gong Zhiyuan, Lufkin Thomas, Liu Edison T, Mathavan Sinnakaruppan", "reference": { "type": "PubMed", "id": "21575170", "url": "https://pubmed.ncbi.nlm.nih.gov/21575170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A7F1-1", "protein_name": "Prostate-associated microseminoprotein", "gene_name": "msmbl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9Y3-1", "protein_name": "Alpha-2-macroglobulin precursor", "gene_name": "a2m2d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13ABN4-1", "protein_name": "Supervillin a isoform 1", "gene_name": "svila", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RCG8-1", "protein_name": "Ankyrin repeat domain-containing protein 49", "gene_name": "ankrd49", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JM36-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB13A7F1", "url": "https://www.uniprot.org/uniprotkb/A0AB13A7F1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21575170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In silico and biological analysis of anti-androgen activity of the brominated flame retardants ATE, BATE and DPTE in zebrafish.", "journal": "Chem. 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Med. Cell. Longev.", "date": "2017", "authors": "Jiang Li, Yin Meng, Xu Jie, Jia Mengping, Sun Shaoyang, Wang Xu, Zhang Jianyi, Meng Dan", "reference": { "type": "PubMed", "id": "28392885", "url": "https://pubmed.ncbi.nlm.nih.gov/28392885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A814-1", "protein_name": "Transcription regulator protein BACH1b isoform 1", "gene_name": "bach1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB13A814", "url": "https://www.uniprot.org/uniprotkb/A0AB13A814" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28392885", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BACH family members regulate angiogenesis and lymphangiogenesis by modulating VEGFC expression.", "journal": "Life. Sci Alliance", "date": "2020", "authors": "Cohen Batya, Tempelhof Hanoch, Raz Tal, Oren Roni, Nicenboim Julian, Bochner Filip, Even Ron, Jelinski Adam, Eilam Raya, Ben-Dor Shifra, Adaddi Yoseph, Golani Ofra, Lazar Shlomi, Yaniv Karina, Neeman Michal", "reference": { "type": "PubMed", "id": "32132179", "url": "https://pubmed.ncbi.nlm.nih.gov/32132179" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A814-1", "protein_name": "Transcription regulator protein BACH1b isoform 1", "gene_name": "bach1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T1F9-1", "protein_name": "Transcription regulator protein BACH1a isoform X1", "gene_name": "bach1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB13A814", "url": "https://www.uniprot.org/uniprotkb/A0AB13A814" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32132179", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localized EMT reprograms glial progenitors to promote spinal cord repair.", "journal": "Dev. 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Biol.", "date": "2015", "authors": "Chu Qian, Ma Jiao, Saghatelian Alan", "reference": { "type": "PubMed", "id": "25857697", "url": "https://pubmed.ncbi.nlm.nih.gov/25857697" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A8E3-1", "protein_name": "ASNSD1 upstream open reading frame protein", "gene_name": "asdurf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9NWL6-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "ASNSD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "L0R819-1", "protein_name": "ASNSD1 upstream open reading frame protein", "gene_name": "ASDURF", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB13A8E3", "url": "https://www.uniprot.org/uniprotkb/A0AB13A8E3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25857697", 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Sci.", "date": "2022", "authors": "Yang Shuaiqi, Zhang Xiangmin, Li Xianpeng, Yin Xiu, Teng Lei, Ji Guangdong, Li Hongyan", "reference": { "type": "PubMed", "id": "35886872", "url": "https://pubmed.ncbi.nlm.nih.gov/35886872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A8N8-1", "protein_name": "Si:ch211-191a24.3", "gene_name": "tns3.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T7H1-1", "protein_name": "Membrane protein MLC1 isoform X1", "gene_name": "mlc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QU11-1", "protein_name": "Uncharacterized protein LOC503531", "gene_name": "zgc:113518", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1TWC6-1", "protein_name": "Cryptochrome-1", "gene_name": "cry1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P0C7A6-1", "protein_name": "Ankyrin repeat- and BTB/POZ domain-containing protein 3-B", "gene_name": "abtb3b; btbd11b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWC6-1", "protein_name": "dihydrofolate reductase", "gene_name": "zgc:153031", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCE5-1", "protein_name": "Zinc finger-like gene 2a", "gene_name": "znfl2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6P2R0-1", "protein_name": "Polyhomeotic-like protein 2b", "gene_name": "phc2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E9R1-1", "protein_name": "CTTNBP2 N-terminal like b isoform 2", "gene_name": "cttnbp2nlb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJH9-1", "protein_name": "MTSS I-BAR domain containing 2a isoform X1", "gene_name": "mtss1la", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IWF6-1", "protein_name": "Uncharacterized protein LOC550593 precursor", "gene_name": "zgc:113293", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NL22-1", "protein_name": "Chemokine-like protein TAFA-3 isoform X1; 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Ophthalmol. Vis. Sci.", "date": "2009", "authors": "Krock Bryan L, Mills-Henry Ishara, Perkins Brian D", "reference": { "type": "PubMed", "id": "19474410", "url": "https://pubmed.ncbi.nlm.nih.gov/19474410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A9C9-1", "protein_name": "Cytoplasmic dynein 2 heavy chain 1", "gene_name": "dync2h1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB13A9C9", "url": "https://www.uniprot.org/uniprotkb/A0AB13A9C9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19474410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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[] } ] }, { "title": "Multiplexed CRISPR/Cas9-mediated knockout of 19 Fanconi anemia pathway genes in zebrafish revealed their roles in growth, sexual development and fertility.", "journal": "PLoS Genet.", "date": "2018", "authors": "Ramanagoudr-Bhojappa Ramanagouda, Carrington Blake, Ramaswami Mukundhan, Bishop Kevin, Robbins Gabrielle M, Jones MaryPat, Harper Ursula, Frederickson Stephen C, Kimble Danielle C, Sood Raman, Chandrasekharappa Settara C", "reference": { "type": "PubMed", "id": "30540754", "url": "https://pubmed.ncbi.nlm.nih.gov/30540754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB13A9F3-1", "protein_name": "Fanconi anemia group B protein", "gene_name": "fancb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PUU2-1", "protein_name": "Fanconi anemia group I protein isoform X1", "gene_name": "fanci", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HBS2-1", "protein_name": "DNA 5'-3' helicase", "gene_name": 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