[ { "title": "Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes.", "journal": "Molecular biology of the cell", "date": "2004-12", "authors": "Martinez M Juanita, Roy Sushmita, Archuletta Amanda B, Wentzell Peter D, Anna-Arriola Sonia Santa, Rodriguez Angelina L, Aragon Anthony D, Qui\u00f1ones Gabriel A, Allen Chris, Werner-Washburne Margaret", "reference": { "type": "PubMed", "id": "15456898", "url": "https://pubmed.ncbi.nlm.nih.gov/15456898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42933-1", "protein_name": "Stationary phase protein 5", "gene_name": "SPG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50088-1", "protein_name": "Stationary phase gene 1 protein", "gene_name": "SPG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04398-1", "protein_name": "Stationary phase protein 3", "gene_name": "SPG3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04438-1", "protein_name": "Stationary phase protein 4", "gene_name": "SPG4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07653-1", "protein_name": "Protein HBT1", "gene_name": "HBT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42933", "url": "https://www.uniprot.org/uniprotkb/P42933" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15456898", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase.", "journal": "Mol. 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Biol.", "date": "1994", "authors": "Gangloff S, McDonald J P, Bendixen C, Arthur L, Rothstein R", "reference": { "type": "PubMed", "id": "7969174", "url": "https://pubmed.ncbi.nlm.nih.gov/7969174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42933-1", "protein_name": "Stationary phase protein 5", "gene_name": "SPG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35187-1", "protein_name": "ATP-dependent helicase SGS1", "gene_name": "SGS1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42933", "url": "https://www.uniprot.org/uniprotkb/P42933" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7969174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Microbiol.", "date": "1995", "authors": "Miralles V J, Serrano R", "reference": { "type": "PubMed", "id": "8801420", "url": "https://pubmed.ncbi.nlm.nih.gov/8801420" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50263-1", "protein_name": "Protein SIP18", "gene_name": "SIP18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47771-1", "protein_name": "Aldehyde dehydrogenase [NAD(P)+] 1", "gene_name": "ALD2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P50263", "url": "https://www.uniprot.org/uniprotkb/P50263" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8801420", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of Saccharomyces cerevisiae yapsin 3, a new member of the yapsin family of aspartic proteases encoded by the YPS3 gene.", "journal": "Biochem. J.", "date": "1999", "authors": "Olsen V, Cawley N X, Brandt J, Egel-Mitani M, Loh Y P", "reference": { "type": "PubMed", "id": "10191273", "url": "https://pubmed.ncbi.nlm.nih.gov/10191273" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53057-1", "protein_name": "Yapsin-5", "gene_name": "YPS5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12303-1", "protein_name": "Aspartic proteinase yapsin-3", "gene_name": "YPS3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53057", "url": "https://www.uniprot.org/uniprotkb/P53057" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10191273", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcription elongation factor S-II confers yeast resistance to 6-azauracil by enhancing expression of the SSM1 gene.", "journal": "J. 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[] } ] }, { "title": "Yeast gene of unknown function YGL081W is involved in DNA damage response.", "journal": "microPublication biology", "date": "2025", "authors": "King Ari, Emery Taylor M, Reese Katie, Tinsley Heather N", "reference": { "type": "PubMed", "id": "40583961", "url": "https://pubmed.ncbi.nlm.nih.gov/40583961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53156-1", "protein_name": "Uncharacterized protein YGL081W", "gene_name": "", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53156", "url": "https://www.uniprot.org/uniprotkb/P53156" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.40583961", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol. Chem.", "date": "2005", "authors": "Aouida Mustapha, Leduc Anick, Poulin Richard, Ramotar Dindial", "reference": { "type": "PubMed", "id": "15855155", "url": "https://pubmed.ncbi.nlm.nih.gov/15855155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53194-1", "protein_name": "Uncharacterized protein BRP1", "gene_name": "BRP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38260-1", "protein_name": "Hsp70 nucleotide exchange factor FES1", "gene_name": "FES1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53194", "url": "https://www.uniprot.org/uniprotkb/P53194" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15855155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of polyamine tolerance in yeast: novel regulators and insights.", "journal": "Cell. Mol. Life Sci.", "date": "2005", "authors": "Porat Z, Wender N, Erez O, Kahana C", "reference": { "type": "PubMed", "id": "16374585", "url": "https://pubmed.ncbi.nlm.nih.gov/16374585" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53194-1", "protein_name": "Uncharacterized protein BRP1", "gene_name": "BRP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38260-1", "protein_name": "Hsp70 nucleotide exchange factor FES1", "gene_name": "FES1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53194", "url": "https://www.uniprot.org/uniprotkb/P53194" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16374585", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of proteins by inositol pyrophosphates.", "journal": "Science (New York, N.Y.)", "date": "2004", "authors": "Saiardi A, Bhandari R, Resnick AC, Snowman AM, Snyder SH", "reference": { "type": "PubMed", "id": "15604408", "url": "https://pubmed.ncbi.nlm.nih.gov/15604408" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"comment": "Strongly reduced pyrophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "E9Q5C9", "url": "https://www.uniprot.org/uniprotkb/E9Q5C9" }, { "database": "PubMed", "id": "15604408", "url": "https://pubmed.ncbi.nlm.nih.gov/15604408" } ], "uniprot_canonical_ac": "E9Q5C9-1" }, { "start_pos": 84, "end_pos": 89, "sequence_org": "SSSDSS", "sequence_mut": "AAADAA", "comment": "Abolished pyrophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "E9Q5C9", "url": "https://www.uniprot.org/uniprotkb/E9Q5C9" }, { "database": "PubMed", "id": "15604408", "url": "https://pubmed.ncbi.nlm.nih.gov/15604408" } ], "uniprot_canonical_ac": "E9Q5C9-1" }, { "start_pos": 87, "end_pos": 97, "sequence_org": "DSSEDSSEDED", "sequence_mut": "NSSQNSSQQQN", "comment": "Strongly reduced pyrophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "E9Q5C9", "url": "https://www.uniprot.org/uniprotkb/E9Q5C9" }, { "database": "PubMed", "id": "15604408", "url": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The sequence of a 8 kb segment on the right arm of yeast chromosome VII identifies four new open reading frames and the genes for yTAFII145.", "journal": "Yeast", "date": "1997", "authors": "Ruzzi M, Marconi A, Saliola M, Fabiani L, Montebove F, Frontali L", "reference": { "type": "PubMed", "id": "9133740", "url": "https://pubmed.ncbi.nlm.nih.gov/9133740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53329-1", "protein_name": "Uncharacterized protein YGR273C", "gene_name": "G9371", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53330-1", "protein_name": "Regulator of Ty1 transposition protein 102", "gene_name": "RTT102", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53332-1", "protein_name": "Phosphopantetheine adenylyltransferase", "gene_name": "CAB4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53331-1", "protein_name": "RNA exonuclease 1", "gene_name": "RNH70", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E705-1", "protein_name": "rRNA-processing protein EFG1", "gene_name": "EFG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46677-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53329", "url": "https://www.uniprot.org/uniprotkb/P53329" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9133740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "P53630-1", "protein_name": "Dethiobiotin synthetase", "gene_name": "BIO4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53744-1", "protein_name": "7-keto 8-aminopelargonic acid transporter", "gene_name": "BIO5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53745", "url": "https://www.uniprot.org/uniprotkb/P53745" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10333520", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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Proteome Res.", "date": "2003", "authors": "Gao Ji, Opiteck Gregory J, Friedrichs Mark S, Dongre Ashok R, Hefta Stanley A", "reference": { "type": "PubMed", "id": "14692458", "url": "https://pubmed.ncbi.nlm.nih.gov/14692458" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53758-1", "protein_name": "UPF0320 protein YNR077C", "gene_name": "N3830", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53758", "url": "https://www.uniprot.org/uniprotkb/P53758" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14692458", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Genet.", "date": "1990", "authors": "Kallal L A, Bhattacharyya M, Grove S N, Iannacone R F, Pugh T A, Primerano D A, Clancy M J", "reference": { "type": "PubMed", "id": "2253272", "url": "https://pubmed.ncbi.nlm.nih.gov/2253272" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q01684-1", "protein_name": "Sporulation-specific protein", "gene_name": "SPR6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q01684", "url": "https://www.uniprot.org/uniprotkb/Q01684" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2253272", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"Analysis of the seven-member AAD gene set demonstrates that genetic redundancy in yeast may be more apparent than real.", "journal": "Genetics", "date": "1999", "authors": "Delneri D, Gardner D C, Oliver S G", "reference": { "type": "PubMed", "id": "10581269", "url": "https://pubmed.ncbi.nlm.nih.gov/10581269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02895-1", "protein_name": "Putative aryl-alcohol dehydrogenase AAD16", "gene_name": "AAD16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07747-1", "protein_name": "Probable aryl-alcohol dehydrogenase AAD4", "gene_name": "AAD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08361-1", "protein_name": "Putative aryl-alcohol dehydrogenase AAD15", "gene_name": "AAD15", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q02895", "url": "https://www.uniprot.org/uniprotkb/Q02895" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10581269", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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resistance network from genome-wide characterization of the YRR1 transcription factor regulation system.", "journal": "Mol. Cell. Biol.", "date": "2002", "authors": "Le Crom St\u00e9phane, Devaux Fr\u00e9d\u00e9ric, Marc Philippe, Zhang Xiaoting, Moye-Rowley W Scott, Jacq Claude", "reference": { "type": "PubMed", "id": "11909958", "url": "https://pubmed.ncbi.nlm.nih.gov/11909958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02895-1", "protein_name": "Putative aryl-alcohol dehydrogenase AAD16", "gene_name": "AAD16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06139-1", "protein_name": "Citrinin resistance protein, mitochondrial", "gene_name": "CIS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38281-1", "protein_name": "Actin patches distal protein 1", "gene_name": "APD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12172-1", "protein_name": "Zinc finger transcription factor YRR1", "gene_name": "YRR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q02895", "url": "https://www.uniprot.org/uniprotkb/Q02895" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11909958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic control of recombination partner preference in yeast meiosis. Isolation and characterization of mutants elevated for meiotic unequal sister-chromatid recombination.", "journal": "Genetics", "date": "1999", "authors": "Thompson D A, Stahl F W", "reference": { "type": "PubMed", "id": "10511544", "url": "https://pubmed.ncbi.nlm.nih.gov/10511544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03104-1", "protein_name": "Meiotic sister chromatid recombination protein 1", "gene_name": "MSC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05812-1", "protein_name": "Meiotic sister-chromatid recombination protein 3", "gene_name": "MSC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03455-1", "protein_name": "Probable zinc transporter MSC2", "gene_name": "MSC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08818-1", "protein_name": "Meiotic sister-chromatid recombination protein 6, mitochondrial", "gene_name": "MSC6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q03104", "url": "https://www.uniprot.org/uniprotkb/Q03104" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10511544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of a non-nudix pyrophosphatase points to interplay between flavin and NAD(H) homeostasis in Saccharomyces cerevisiae.", "journal": "PloS one", "date": "2018", "authors": "Lynch Joseph H, Sa Na, Saeheng Sompop, Raffaelli Nadia, Roje Sanja", "reference": { "type": "PubMed", "id": "29902190", "url": "https://pubmed.ncbi.nlm.nih.gov/29902190" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03219-1", "protein_name": "FAD diphosphatase", "gene_name": "FPY1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q03219", "url": "https://www.uniprot.org/uniprotkb/Q03219" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.29902190", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential requirements of novel A1PiZ degradation deficient (ADD) genes in ER-associated protein degradation.", "journal": "Journal of cell science", "date": "2003-06-01", "authors": "Palmer Elizabeth A, Kruse Kristina B, Fewell Sheara W, Buchanan Sean M, Brodsky Jeffrey L, McCracken Ardythe A", "reference": { "type": "PubMed", "id": "12711700", "url": "https://pubmed.ncbi.nlm.nih.gov/12711700" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03233-1", "protein_name": "Alpha1-proteinase inhibitor-degradation deficient protein 37", "gene_name": "ADD37", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36040-1", "protein_name": "Proteasome assembly chaperone 2", "gene_name": "ADD66", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q03233", "url": "https://www.uniprot.org/uniprotkb/Q03233" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12711700", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systematic analysis of membrane contact sites in Saccharomyces cerevisiae uncovers modulators of cellular lipid distribution.", "journal": "eLife", "date": "2022-11-10", "authors": "Castro In\u00eas Gomes, Shortill Shawn P, Dziurdzik Samantha Katarzyna, Cadou Angela, Ganesan Suriakarthiga, Valenti Rosario, David Yotam, Davey Michael, Mattes Carsten, Thomas Ffion B, Avraham Reut Ester, Meyer Hadar, Fadel Amir, Fenech Emma J, Ernst Robert, Zaremberg Vanina, Levine Tim P, Stefan Christopher, Conibear Elizabeth, Schuldiner Maya", "reference": { "type": "PubMed", "id": "36354737", "url": "https://pubmed.ncbi.nlm.nih.gov/36354737" }, 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J. Biochem.", "date": "1985", "authors": "Marres C A, Van Loon A P, Oudshoorn P, Van Steeg H, Grivell L A, Slater E C", "reference": { "type": "PubMed", "id": "3882422", "url": "https://pubmed.ncbi.nlm.nih.gov/3882422" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07074-1", "protein_name": "Uncharacterized protein YHR007C-A", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P00447-1", "protein_name": "Superoxide dismutase [Mn], mitochondrial", "gene_name": "SOD2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q07074", "url": "https://www.uniprot.org/uniprotkb/Q07074" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.3882422", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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of the yeast Hsp90 chaperone system by two-hybrid analysis: potential uses and limitations of this approach.", "journal": "Cell Stress Chaperones", "date": "2004", "authors": "Millson Stefan H, Truman Andrew W, Wolfram Francis, King Victoria, Panaretou Barry, Prodromou Chrisostomos, Pearl Laurence H, Piper Peter W", "reference": { "type": "PubMed", "id": "15633294", "url": "https://pubmed.ncbi.nlm.nih.gov/15633294" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08187-1", "protein_name": "Uncharacterized protein YOL029C", "gene_name": "", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08187", "url": "https://www.uniprot.org/uniprotkb/Q08187" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15633294", "abstract": "", "glycosylation": [], 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F J, Gancedo C", "reference": { "type": "PubMed", "id": "8896268", "url": "https://pubmed.ncbi.nlm.nih.gov/8896268" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08259-1", "protein_name": "Uncharacterized protein YOL118C", "gene_name": "O0573", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38925-1", "protein_name": "Manganese transporter SMF1", "gene_name": "SMF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08268-1", "protein_name": "Probable transporter MCH4", "gene_name": "MCH4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q99383-1", "protein_name": "Nuclear polyadenylated RNA-binding protein 4", "gene_name": "HRP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07280-1", "protein_name": "Small ribosomal subunit protein eS19A", "gene_name": "RPS19A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX49-1", "protein_name": "Large ribosomal subunit protein eL18A", "gene_name": "RPL18A", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08259", "url": "https://www.uniprot.org/uniprotkb/Q08259" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8896268", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae.", "journal": "Genetics", "date": "2003", "authors": "Griffith Jacqulyn L, Coleman Laura E, Raymond Adam S, Goodson Summer G, Pittard William S, Tsui Circe, Devine Scott E", "reference": { "type": "PubMed", "id": "12871900", "url": "https://pubmed.ncbi.nlm.nih.gov/12871900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08300-1", "protein_name": "Secreted protein CSS3", "gene_name": "CSS3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08300", "url": "https://www.uniprot.org/uniprotkb/Q08300" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vam10p defines a Sec18p-independent step of priming that allows yeast vacuole tethering.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2003-05-27", "authors": "Kato Masashi, Wickner William", "reference": { "type": "PubMed", "id": "12748377", "url": "https://pubmed.ncbi.nlm.nih.gov/12748377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08474-1", "protein_name": "Vacuolar morphogenesis protein 10", "gene_name": "VAM10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08474", "url": "https://www.uniprot.org/uniprotkb/Q08474" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12748377", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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