[ { "title": "Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment.", "journal": "Journal of proteome research", "date": "2011", "authors": "Zhao P, Viner R, Teo CF, Boons GJ, Horn D, Wells L", "reference": { "type": "PubMed", "id": "21740066", "url": "https://pubmed.ncbi.nlm.nih.gov/21740066" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXA5-1", "protein_name": "Sperm acrosome membrane-associated protein 3", "gene_name": "SPACA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3S1-1", "protein_name": "Serine/threonine-protein kinase WNK2", "gene_name": "WNK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM3-1", "protein_name": "YEATS domain-containing protein 2", "gene_name": "YEATS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09211-1", "protein_name": "Glutathione S-transferase P", "gene_name": "GSTP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15652-1", "protein_name": "Jumonji domain-containing protein 1C", "gene_name": "JMJD1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34932-1", "protein_name": "Heat shock 70 kDa protein 4", "gene_name": "HSPA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52594-1", "protein_name": "Arf-GAP domain and FG repeat-containing protein 1", "gene_name": "AGFG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JPF3-1", "protein_name": "Ankyrin repeat domain-containing protein 36C", "gene_name": "ANKRD36C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96K80-1", "protein_name": "Zinc finger CCCH domain-containing protein 10", "gene_name": "ZC3H10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXJ9-1", "protein_name": "Polycomb group protein ASXL1", "gene_name": "ASXL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60884-1", "protein_name": "DnaJ homolog subfamily A member 2", "gene_name": "DNAJA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14978-1", "protein_name": "Nucleolar and coiled-body phosphoprotein 1", "gene_name": "NOLC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31689-1", "protein_name": "DnaJ homolog subfamily A member 1", "gene_name": "DNAJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07021-1", "protein_name": "Complement component 1 Q subcomponent-binding protein, mitochondrial", "gene_name": "C1QBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51610-1", "protein_name": "Host cell factor 1", "gene_name": "HCFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14497-1", "protein_name": "AT-rich interactive domain-containing protein 1A", "gene_name": "ARID1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15047-1", "protein_name": "Histone-lysine N-methyltransferase SETD1A", "gene_name": "SETD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ3-1", "protein_name": "Ankyrin repeat and KH domain-containing protein 1", "gene_name": "ANKHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15291-1", "protein_name": "Retinoblastoma-binding protein 5", "gene_name": "RBBP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P4R8-1", "protein_name": "Nuclear factor related to kappa-B-binding protein", "gene_name": "NFRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4A3-1", "protein_name": "Serine/threonine-protein kinase WNK1", "gene_name": "WNK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60308-1", "protein_name": "Centrosomal protein of 104 kDa", "gene_name": "CEP104", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92499-1", "protein_name": "ATP-dependent RNA helicase DDX1", "gene_name": "DDX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR30-1", "protein_name": "Nucleolar RNA helicase 2", "gene_name": "DDX21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30040-1", "protein_name": "Endoplasmic reticulum resident protein 29", "gene_name": "ERP29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z417-1", "protein_name": "FMR1-interacting protein NUFIP2", "gene_name": "NUFIP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14789-1", "protein_name": "Golgin subfamily B member 1", "gene_name": "GOLGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23246-1", "protein_name": "Splicing factor, proline- and glutamine-rich", "gene_name": "SFPQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92598-1", "protein_name": "Heat shock protein 105 kDa", "gene_name": "HSPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZP7-1", "protein_name": "Protein lin-54 homolog", "gene_name": "LIN54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50991-1", "protein_name": "T-complex protein 1 subunit delta", "gene_name": "CCT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19835-1", "protein_name": "Bile salt-activated lipase", "gene_name": "CEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T8P6-1", "protein_name": "RNA-binding protein 26", "gene_name": "RBM26", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95487-1", "protein_name": "Protein transport protein Sec24B", "gene_name": "SEC24B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13151-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A0", "gene_name": "HNRNPA0", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99729-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A/B", "gene_name": "HNRNPAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92945-1", "protein_name": "Far upstream element-binding protein 2", "gene_name": "KHSRP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTC0-4", "protein_name": "Death-inducer obliterator 1", "gene_name": "DIDO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38646-1", "protein_name": "Stress-70 protein, mitochondrial", "gene_name": "HSPA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24534-1", "protein_name": "Elongation factor 1-beta", "gene_name": "EEF1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF5-1", "protein_name": "DNA methyltransferase 1-associated protein 1", "gene_name": "DMAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04406-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "GAPDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZK7-1", "protein_name": "F-box-like/WD repeat-containing protein TBL1XR1", "gene_name": "TBL1XR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75822-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit J", "gene_name": "EIF3J", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99700-1", "protein_name": "Ataxin-2", "gene_name": "ATXN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWM7-1", "protein_name": "Ataxin-2-like protein", "gene_name": "ATXN2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXM2-1", "protein_name": "BPTF-associated chromatin complex component 1", "gene_name": "BACC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z589-1", "protein_name": "BRCA2-interacting transcriptional repressor EMSY", "gene_name": "EMSY", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYP7-1", "protein_name": "Serine/threonine-protein kinase WNK3", "gene_name": "WNK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10599-1", "protein_name": "Thioredoxin", "gene_name": "TXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14011-1", "protein_name": "Cold-inducible RNA-binding protein", "gene_name": "CIRBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC51-1", "protein_name": "SERPINE1 mRNA-binding protein 1", "gene_name": "SERBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y265-1", "protein_name": "RuvB-like 1", "gene_name": "RUVBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N6-1", "protein_name": "KAT8 regulatory NSL complex subunit 3", "gene_name": "KANSL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95881-1", "protein_name": "Thioredoxin domain-containing protein 12", "gene_name": "TXNDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "C9JLW8-1", "protein_name": "Mapk-regulated corepressor-interacting protein 1", "gene_name": "MCRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y520-1", "protein_name": "Protein PRRC2C", "gene_name": "PRRC2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62937-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A", "gene_name": "PPIA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14119-1", "protein_name": "Vascular endothelial zinc finger 1", "gene_name": "VEZF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10412-1", "protein_name": "Histone H1.4", "gene_name": "H1-4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3MHD2-1", "protein_name": "Protein LSM12", "gene_name": "LSM12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWI9-4", "protein_name": "MAX gene-associated protein", "gene_name": "MGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBL3-1", "protein_name": "Set1/Ash2 histone methyltransferase complex subunit ASH2", "gene_name": "ASH2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61964-1", "protein_name": "WD repeat-containing protein 5", "gene_name": "WDR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13185-1", "protein_name": "Chromobox protein homolog 3", "gene_name": "CBX3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07737-1", "protein_name": "Profilin-1", "gene_name": "PFN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68104-1", "protein_name": "Elongation factor 1-alpha 1", "gene_name": "EEF1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19338-1", "protein_name": "Nucleolin", "gene_name": "NCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVL2-1", "protein_name": "Nucleoporin p58/p45", "gene_name": "NUP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26196-1", "protein_name": "Probable ATP-dependent RNA helicase DDX6", "gene_name": "DDX6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12906-1", "protein_name": "Interleukin enhancer-binding factor 3", "gene_name": "ILF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92734-1", "protein_name": "Protein TFG", "gene_name": "TFG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07666-1", "protein_name": "KH domain-containing, RNA-binding, signal transduction-associated protein 1", "gene_name": "KHDRBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75179-1", "protein_name": "Ankyrin repeat domain-containing protein 17", "gene_name": "ANKRD17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22061-1", "protein_name": "Protein-L-isoaspartate(D-aspartate) O-methyltransferase", "gene_name": "PCMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03164-1", "protein_name": "Histone-lysine N-methyltransferase 2A", "gene_name": "KMT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3I0-1", "protein_name": "RNA-splicing ligase RTCB", "gene_name": "RTCB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68DL7-1", "protein_name": "Uncharacterized protein C18orf63", "gene_name": "C18orf63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05109-1", "protein_name": "Protein S100-A8", "gene_name": "S100A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFC6-1", "protein_name": "Biorientation of chromosomes in cell division protein 1-like 1", "gene_name": "BOD1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92922-1", "protein_name": "SWI/SNF complex subunit SMARCC1", "gene_name": "SMARCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYF8-1", "protein_name": "Bcl-2-associated transcription factor 1", "gene_name": "BCLAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53992-1", "protein_name": "Protein transport protein Sec24C", "gene_name": "SEC24C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15294-1", "protein_name": "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit", "gene_name": "OGT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43487-1", "protein_name": "Ran-specific GTPase-activating protein", "gene_name": "RANBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Y8-1", "protein_name": "SEC23-interacting protein", "gene_name": "SEC23IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2KHR3-1", "protein_name": "Glutamine and serine-rich protein 1", "gene_name": "QSER1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37108-1", "protein_name": "Signal recognition particle 14 kDa protein", "gene_name": "SRP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6F2-1", "protein_name": "Ubiquitin-associated protein 2", "gene_name": "UBAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52948-1", "protein_name": "Nuclear pore complex protein Nup98-Nup96", "gene_name": "NUP98", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14157-2", "protein_name": "Ubiquitin-associated protein 2-like", "gene_name": "UBAP2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43670-1", "protein_name": "BUB3-interacting and GLEBS motif-containing protein ZNF207", "gene_name": "ZNF207", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RK0-1", "protein_name": "Protein capicua homolog", "gene_name": "CIC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15436-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "SEC23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y230-1", "protein_name": "RuvB-like 2", "gene_name": "RUVBL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYV4-1", "protein_name": "Cyclin-dependent kinase 12", "gene_name": "CDK12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y224-1", "protein_name": "tRNA-splicing ligase complex subunit RTRAF", "gene_name": "RTRAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NCA5-1", "protein_name": "Protein FAM98A", "gene_name": "FAM98A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14974-1", "protein_name": "Protein phosphatase 1 regulatory subunit 12A", "gene_name": "PPP1R12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAQ2-1", "protein_name": "SWI/SNF complex subunit SMARCC2", "gene_name": "SMARCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY81-1", "protein_name": "pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3", "gene_name": "FTSJ3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VSY0-1", "protein_name": "G kinase-anchoring protein 1", "gene_name": "GKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23416-1", "protein_name": "Glycine receptor subunit alpha-2", "gene_name": "GLRA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14979-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D-like", "gene_name": "HNRNPDL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3F4-1", "protein_name": "Serine-threonine kinase receptor-associated protein", "gene_name": "STRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13929-1", "protein_name": "Beta-enolase", "gene_name": "ENO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15717-1", "protein_name": "ELAV-like protein 1", "gene_name": "ELAVL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06733-1", "protein_name": "Alpha-enolase", "gene_name": "ENO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30405-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase F, mitochondrial", "gene_name": "PPIF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75821-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit G", "gene_name": "EIF3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [], "record_id": "pubmed.21740066", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 179 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2445 }, { "field": "total_sites", "count": 1362 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1362 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1362 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 1361 }, { "field": "exact_o_linked_sites", "count": 1361 }, { "field": "exact_o_linked_glycan_sites", "count": 1361 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2445 }, { "field": "total_sites", "count": 1362 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1362 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1362 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 1361 }, { "field": "exact_o_linked_sites", "count": 1361 }, { "field": "exact_o_linked_glycan_sites", "count": 1361 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]