[ { "title": "Differential expression patterns of arabinogalactan proteins in Arabidopsis thaliana reproductive tissues.", "journal": "J. Exp. Bot.", "date": "2014", "authors": "Pereira Ana Marta, Masiero Simona, Nobre Margarida Sofia, Costa M\u00e1rio Lu\u00eds, Sol\u00eds Mar\u00eda-Teresa, Testillano Pilar S, Sprunck Stefanie, Coimbra S\u00edlvia", "reference": { "type": "PubMed", "id": "25053647", "url": "https://pubmed.ncbi.nlm.nih.gov/25053647" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYF6-1", "protein_name": "Arabinogalactan protein 15", "gene_name": "AGP15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S2W4-1", "protein_name": "Arabinogalactan protein 23", "gene_name": "AGP23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJD9-1", "protein_name": "Arabinogalactan protein 12", "gene_name": "AGP12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYF6", "url": "https://www.uniprot.org/uniprotkb/Q9LYF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25053647", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nitrate transport in plants: which gene and which control?", "journal": "J. Exp. Bot.", "date": "2002", "authors": "Orsel Mathilde, Filleur Sophie, Fraisier Vincent, Daniel-Vedele Fran\u00e7oise", "reference": { "type": "PubMed", "id": "11912225", "url": "https://pubmed.ncbi.nlm.nih.gov/11912225" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYK2-1", "protein_name": "High affinity nitrate transporter 2.7", "gene_name": "NRT2.7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMZ9-1", "protein_name": "High-affinity nitrate transporter 2.2", "gene_name": "NRT2.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPV5-1", "protein_name": "High affinity nitrate transporter 2.5", "gene_name": "NRT2.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82811-1", "protein_name": "High-affinity nitrate transporter 2.1", "gene_name": "NRT2.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXH0-1", "protein_name": "High affinity nitrate transporter 2.6", "gene_name": "NRT2.6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJH7-1", "protein_name": "High affinity nitrate transporter 2.3", "gene_name": "NRT2.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJH8-1", "protein_name": "High affinity nitrate transporter 2.4", "gene_name": "NRT2.4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYK2", "url": "https://www.uniprot.org/uniprotkb/Q9LYK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11912225", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Disruption of the nitrate transporter genes AtNRT2.1 and AtNRT2.2 restricts growth at low external nitrate concentration.", "journal": "Planta", "date": "2004-08", "authors": "Orsel Mathilde, Eulenburg Katharina, Krapp Anne, Daniel-Vedele Fran\u00e7oise", "reference": { "type": "PubMed", "id": "15107992", "url": "https://pubmed.ncbi.nlm.nih.gov/15107992" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYK2-1", "protein_name": "High affinity nitrate transporter 2.7", "gene_name": "NRT2.7", "tax_name": 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"2016-12", "authors": "Kapolas Georgios, Beris Despoina, Katsareli Efthimia, Livanos Pantelis, Zografidis Aris, Roussis Andreas, Milioni Dimitra, Haralampidis Kosmas", "reference": { "type": "PubMed", "id": "27968983", "url": "https://pubmed.ncbi.nlm.nih.gov/27968983" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYK6-1", "protein_name": "Protein ANTHESIS PROMOTING FACTOR 1", "gene_name": "APRF1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYK6", "url": "https://www.uniprot.org/uniprotkb/Q9LYK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27968983", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Exp. Bot.", "date": "2015", "authors": "Jeon Young, Park Yong-Joon, Cho Hui Kyung, Jung Hyun Ju, Ahn Tae-Kyu, Kang Hunseung, Pai Hyun-Sook", "reference": { "type": "PubMed", "id": "26163696", "url": "https://pubmed.ncbi.nlm.nih.gov/26163696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYK7-1", "protein_name": "Pescadillo homolog", "gene_name": "PES", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LUJ5-1", "protein_name": "Probable rRNA-processing protein EBP2 homolog", "gene_name": "EBP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M8Z5-1", "protein_name": "Guanine nucleotide-binding protein-like NSN1", "gene_name": "NSN1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYK7", "url": "https://www.uniprot.org/uniprotkb/Q9LYK7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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Mathews Dennis E, Kieber Joseph J, Schaller G Eric", "reference": { "type": "PubMed", "id": "15173562", "url": "https://pubmed.ncbi.nlm.nih.gov/15173562" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYP5-1", "protein_name": "Putative two-component response regulator ARR21", "gene_name": "ARR21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZJ8-1", "protein_name": "Putative two-component response regulator ARR20", "gene_name": "ARR20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGT7-1", "protein_name": "Two-component response regulator ARR18", "gene_name": "ARR18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9B9-1", "protein_name": "Putative two-component response regulator ARR19", "gene_name": "ARR19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWJ9-1", "protein_name": "Two-component response regulator ARR2", "gene_name": "ARR2", "tax_name": "Mouse-ear cress" }, { 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"Developmental cell", "date": "2003-05", "authors": "Bilgin Damla D, Liu Yule, Schiff Michael, Dinesh-Kumar S P", "reference": { "type": "PubMed", "id": "12737801", "url": "https://pubmed.ncbi.nlm.nih.gov/12737801" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LYW9-1", "protein_name": "DnaJ protein P58IPK homolog", "gene_name": "P58IPK", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LYW9", "url": "https://www.uniprot.org/uniprotkb/Q9LYW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12737801", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Biol.", "date": "2005", "authors": "Song Sang-Kee, Clark Steven E", "reference": { "type": "PubMed", "id": "16112663", "url": "https://pubmed.ncbi.nlm.nih.gov/16112663" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZ86-1", "protein_name": "Probable protein phosphatase 2C 66", "gene_name": "PLL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQN6-1", "protein_name": "Probable protein phosphatase 2C 4", "gene_name": "PLL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR24-1", "protein_name": "Probable protein phosphatase 2C 36", "gene_name": "PLL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZV25-1", "protein_name": "Probable protein phosphatase 2C 23", "gene_name": "PLL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWN7-1", "protein_name": "Protein phosphatase 2C 32", "gene_name": "POL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82302-1", "protein_name": 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"authors": "Kim Dong Wook, Lee Sang Ho, Choi Sang-Bong, Won Su-Kyung, Heo Yoon-Kyung, Cho Misuk, Park Youn-Il, Cho Hyung-Taeg", "reference": { "type": "PubMed", "id": "17098810", "url": "https://pubmed.ncbi.nlm.nih.gov/17098810" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZJ7-1", "protein_name": "Proline-rich protein 3", "gene_name": "PRP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZJ7", "url": "https://www.uniprot.org/uniprotkb/Q9LZJ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17098810", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol.", "date": "2004", "authors": "Chen Kegui, Fan Baofang, Du Liqun, Chen Zhixiang", "reference": { "type": "PubMed", "id": "15604743", "url": "https://pubmed.ncbi.nlm.nih.gov/15604743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZU4-1", "protein_name": "Cysteine-rich receptor-like protein kinase 4", "gene_name": "CRK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65479-1", "protein_name": "Putative cysteine-rich receptor-like protein kinase 20", "gene_name": "CRK20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5S8-1", "protein_name": "Cysteine-rich receptor-like protein kinase 5", "gene_name": "CRK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYA4-1", "protein_name": "Cysteine-rich receptor-like protein kinase 10", "gene_name": "CRK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWJ7-1", "protein_name": "Cysteine-rich receptor-like protein kinase 19", "gene_name": 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Biol.", "date": "1994", "authors": "Vauterin M, Jacobs M", "reference": { "type": "PubMed", "id": "8049377", "url": "https://pubmed.ncbi.nlm.nih.gov/8049377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LZX6-1", "protein_name": "4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic", "gene_name": "DHDPS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LZX6", "url": "https://www.uniprot.org/uniprotkb/Q9LZX6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8049377", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of an Arabidopsis mitochondrial succinate-fumarate translocator.", "journal": "FEBS letters", "date": "2003-01-16", "authors": "Catoni Elisabetta, Schwab Rebecca, Hilpert Melanie, Desimone Marcelo, Schwacke Rainer, Fl\u00fcgge Ulf Ingo, Schumacher Karin, Frommer Wolf B", "reference": { "type": "PubMed", "id": "12527366", "url": "https://pubmed.ncbi.nlm.nih.gov/12527366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M038-1", "protein_name": "Mitochondrial succinate-fumarate 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Biophys. Res. Commun.", "date": "2010", "authors": "Kato Yuki, Konishi Mineko, Shigyo Mikao, Yoneyama Tadakatsu, Yanagisawa Shuichi", "reference": { "type": "PubMed", "id": "20570652", "url": "https://pubmed.ncbi.nlm.nih.gov/20570652" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M060-1", "protein_name": "Eukaryotic translation initiation factor 6-2", "gene_name": "EIF6-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22290-1", "protein_name": "Eukaryotic translation initiation factor 6-1", "gene_name": "EIF6-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M060", "url": "https://www.uniprot.org/uniprotkb/Q9M060" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20570652", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Plant Sci.", "date": "2015", "authors": "Daumann Manuel, Fischer Marietta, Niopek-Witz Sandra, Girke Christopher, M\u00f6hlmann Torsten", "reference": { "type": "PubMed", "id": "26779190", "url": "https://pubmed.ncbi.nlm.nih.gov/26779190" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M0Y3-1", "protein_name": "Equilibrative nucleotide transporter 3", "gene_name": "ENT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RY23-1", "protein_name": "Nucleoside hydrolase 3", "gene_name": "NSH3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M0Y3", "url": "https://www.uniprot.org/uniprotkb/Q9M0Y3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26779190", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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characterization of cytosolic acetyl-CoA generation by ATP-citrate lyase in Arabidopsis.", "journal": "The Plant cell", "date": "2005-01", "authors": "Fatland Beth L, Nikolau Basil J, Wurtele Eve Syrkin", "reference": { "type": "PubMed", "id": "15608338", "url": "https://pubmed.ncbi.nlm.nih.gov/15608338" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SGY2-1", "protein_name": "ATP-citrate synthase alpha chain protein 1", "gene_name": "ACLA-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SGY2", "url": "https://www.uniprot.org/uniprotkb/Q9SGY2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15608338", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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J. Biochem.", "date": "2002", "authors": "Welinder Karen G, Justesen Annemarie F, Kjaersg\u00e5rd Inger V H, Jensen Rikke B, Rasmussen S\u00f8ren K, Jespersen Hans M, Duroux Laurent", "reference": { "type": "PubMed", "id": "12473102", "url": "https://pubmed.ncbi.nlm.nih.gov/12473102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SZB9-1", "protein_name": "Peroxidase 47", "gene_name": "PER47; PRX47", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZE7-1", "protein_name": "Peroxidase 51", "gene_name": "PER51", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23237-1", "protein_name": "Peroxidase 49", "gene_name": "PER49", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80912-1", "protein_name": "Peroxidase 23", "gene_name": "PER23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93V93-1", "protein_name": "Peroxidase 44", "gene_name": "PER44", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": 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"Expression and molecular analysis of the Arabidopsis DXR gene encoding 1-deoxy-D-xylulose 5-phosphate reductoisomerase, the first committed enzyme of the 2-C-methyl-D-erythritol 4-phosphate pathway.", "journal": "Plant physiology", "date": "2002-08", "authors": "Carretero-Paulet Lorenzo, Ahumada Iv\u00e1n, Cunillera Nuria, Rodr\u00edguez-Concepci\u00f3n Manuel, Ferrer Albert, Boronat Albert, Campos Narciso", "reference": { "type": "PubMed", "id": "12177470", "url": "https://pubmed.ncbi.nlm.nih.gov/12177470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9XFS9-1", "protein_name": "1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic", "gene_name": "DXR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XFS9", "url": "https://www.uniprot.org/uniprotkb/Q9XFS9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis.", "journal": "Plant Physiol.", "date": "2005", "authors": "Hsieh Ming-Hsiun, Goodman Howard M", "reference": { "type": "PubMed", "id": "15863698", "url": "https://pubmed.ncbi.nlm.nih.gov/15863698" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9XFS9-1", "protein_name": "1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic", "gene_name": "DXR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81014-1", "protein_name": "4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic", "gene_name": "ISPE", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAK8-1", "protein_name": "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic", "gene_name": "ISPF", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B35-1", "protein_name": "4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic", "gene_name": "ISPH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P69834-1", "protein_name": "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic", "gene_name": "ISPD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38854-1", "protein_name": "1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic", "gene_name": "DXS", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K0E8-1", "protein_name": "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic", "gene_name": "HDS; ISPG", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XFS9", "url": "https://www.uniprot.org/uniprotkb/Q9XFS9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15863698", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], 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Biol.", "date": "2008", "authors": "Hsieh Ming-Hsiun, Chang Chiung-Yun, Hsu Shih-Jui, Chen Ju-Jiun", "reference": { "type": "PubMed", "id": "18236010", "url": "https://pubmed.ncbi.nlm.nih.gov/18236010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9XFS9-1", "protein_name": "1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic", "gene_name": "DXR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81014-1", "protein_name": "4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic", "gene_name": "ISPE", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAK8-1", "protein_name": "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic", "gene_name": "ISPF", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94B35-1", "protein_name": "4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic", "gene_name": "ISPH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P69834-1", 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Mol. Biol.", "date": "2004", "authors": "Yamasaki Kazuhiko, Kigawa Takanori, Inoue Makoto, Tateno Masaru, Yamasaki Tomoko, Yabuki Takashi, Aoki Masaaki, Seki Eiko, Matsuda Takayoshi, Nunokawa Emi, Ishizuka Yoshiko, Terada Takaho, Shirouzu Mikako, Osanai Takashi, Tanaka Akiko, Seki Motoaki, Shinozaki Kazuo, Yokoyama Shigeyuki", "reference": { "type": "PubMed", "id": "15001351", "url": "https://pubmed.ncbi.nlm.nih.gov/15001351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9S7A9-1", "protein_name": "Squamosa promoter-binding-like protein 4", "gene_name": "SPL4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S9G8-1", "protein_name": "Squamosa promoter-binding-like protein 7", "gene_name": "SPL7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9S7A9", "url": "https://www.uniprot.org/uniprotkb/Q9S7A9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15001351", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains.", "journal": "J. 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[] } ] }, { "title": "Mutations in Arabidopsis condensin genes disrupt embryogenesis, meristem organization and segregation of homologous chromosomes during meiosis.", "journal": "Development", "date": "2003", "authors": "Siddiqui Najeeb U, Stronghill Patricia E, Dengler Ronald E, Hasenkampf Clare A, Riggs C Daniel", "reference": { "type": "PubMed", "id": "12783798", "url": "https://pubmed.ncbi.nlm.nih.gov/12783798" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SN90-1", "protein_name": "Structural maintenance of chromosomes protein 2-2", "gene_name": "ATSMC2; SMC2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5Y4-1", "protein_name": "Structural maintenance of chromosomes protein 2-1", "gene_name": "SMC2-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN90", "url": "https://www.uniprot.org/uniprotkb/Q9SN90" } ], "common_name": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of flowering time in Arabidopsis by K homology domain proteins.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2004", "authors": "Mockler Todd C, Yu Xuhong, Shalitin Dror, Parikh Dhavan, Michael Todd P, Liou Jasmine, Huang Jie, Smith Zachery, Alonso Jose M, Ecker Joseph R, Chory Joanne, Lin Chentao", "reference": { "type": "PubMed", "id": "15310842", "url": "https://pubmed.ncbi.nlm.nih.gov/15310842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SR13-1", "protein_name": "Flowering locus K homology domain", "gene_name": "FLK", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KDN0-1", "protein_name": "KH domain-containing protein HEN4", "gene_name": "HEN4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SR13", "url": "https://www.uniprot.org/uniprotkb/Q9SR13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15310842", "abstract": "", 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Ellis Noel, Beltr\u00e1n Jos\u00e9 P\u00edo, Rameau Catherine, Weller James L", "reference": { "type": "PubMed", "id": "15778459", "url": "https://pubmed.ncbi.nlm.nih.gov/15778459" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SR13-1", "protein_name": "Flowering locus K homology domain", "gene_name": "FLK", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SR13", "url": "https://www.uniprot.org/uniprotkb/Q9SR13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15778459", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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J. Dev. Biol.", "date": "2005", "authors": "Quesada Victor, Dean Caroline, Simpson Gordon G", "reference": { "type": "PubMed", "id": "16096981", "url": "https://pubmed.ncbi.nlm.nih.gov/16096981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SR13-1", "protein_name": "Flowering locus K homology domain", "gene_name": "FLK", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SR13", "url": "https://www.uniprot.org/uniprotkb/Q9SR13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16096981", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Ayaka, Taninaka Ai, Mizutani Masaharu, Sugimoto Yukihiro", "reference": { "type": "PubMed", "id": "21169366", "url": "https://pubmed.ncbi.nlm.nih.gov/21169366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M2E2-1", "protein_name": "(+)-neomenthol dehydrogenase", "gene_name": "SDR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZ42-1", "protein_name": "NADPH-dependent aldehyde reductase 1, chloroplastic", "gene_name": "ChlADR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SQR2-1", "protein_name": "NADPH-dependent aldehyde reductase 2, chloroplastic", "gene_name": "ChlADR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUH5-1", "protein_name": "Short-chain dehydrogenase/reductase 2b", "gene_name": "SDR2b", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUC1-1", "protein_name": "NADPH-dependent alkenal/one oxidoreductase, chloroplastic", "gene_name": "AOR", "tax_name": "Mouse-ear 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Biol. 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"Molecular plant", "date": "2010-05", "authors": "Wimalasekera Rinukshi, Pejchar Premysl, Holk Andr\u00e9, Martinec Jan, Scherer G\u00fcnther F E", "reference": { "type": "PubMed", "id": "20507939", "url": "https://pubmed.ncbi.nlm.nih.gov/20507939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SRQ6-1", "protein_name": "Non-specific phospholipase C3", "gene_name": "NPC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81020-1", "protein_name": "Non-specific phospholipase C2", "gene_name": "NPC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRQ7-1", "protein_name": "Non-specific phospholipase C4", "gene_name": "NPC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H965-1", "protein_name": "Non-specific phospholipase C6", "gene_name": "NPC6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7Y9-1", "protein_name": "Non-specific phospholipase C1", "gene_name": "NPC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S816-1", "protein_name": "Non-specific phospholipase C5", "gene_name": "NPC5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SRQ6", "url": "https://www.uniprot.org/uniprotkb/Q9SRQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20507939", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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Biotechnol. Biochem.", "date": "2002", "authors": "Nakamichi Norihito, Murakami-Kojima Masaya, Sato Eriko, Kishi Yasuko, Yamashino Takafumi, Mizuno Takeshi", "reference": { "type": "PubMed", "id": "12506983", "url": "https://pubmed.ncbi.nlm.nih.gov/12506983" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9STK6-1", "protein_name": "Probable serine/threonine-protein kinase WNK3", "gene_name": "WNK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAV6-1", "protein_name": "Serine/threonine-protein kinase WNK1", "gene_name": "WNK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8Y8-1", "protein_name": "Probable serine/threonine-protein kinase WNK6", "gene_name": "WNK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LST2-1", "protein_name": "Probable serine/threonine-protein kinase WNK7", "gene_name": "WNK7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8Y9-1", "protein_name": "Serine/threonine-protein 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.", "journal": "The Plant cell", "date": "2009-11", "authors": "Hammani Kamel, Okuda Kenji, Tanz Sandra K, Chateigner-Boutin Anne-Laure, Shikanai Toshiharu, Small Ian", "reference": { "type": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The two endo-\u03b2-N-acetylglucosaminidase genes from Arabidopsis thaliana encode cytoplasmic enzymes controlling free N-glycan levels.", "journal": "Plant molecular biology", "date": "2011-10", "authors": "Fischl Richard M, Stadlmann Johannes, Grass Josephine, Altmann Friedrich, L\u00e9onard Renaud", "reference": { "type": "PubMed", "id": "21796445", "url": "https://pubmed.ncbi.nlm.nih.gov/21796445" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SRL4-1", "protein_name": "Cytosolic endo-beta-N-acetylglucosaminidase 2", "gene_name": "ENGASE2; ENGASE85B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JZC2-1", "protein_name": "Cytosolic endo-beta-N-acetylglucosaminidase 1", "gene_name": "ENGASE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SRL4", "url": "https://www.uniprot.org/uniprotkb/Q9SRL4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21796445", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.", "journal": "Biochemical and biophysical research communications", "date": "2007-10-19", "authors": "Shen Huaishun, Cao Kaiming, Wang Xiping", "reference": { "type": "PubMed", "id": "17719007", "url": "https://pubmed.ncbi.nlm.nih.gov/17719007" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M2K4-1", "protein_name": "Basic leucine zipper 61", "gene_name": "BZIP61", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMC2-1", "protein_name": "Basic leucine zipper 43", "gene_name": "BZIP43", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA75-1", "protein_name": "Transcription factor VIP1", "gene_name": "VIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IN23-1", "protein_name": "Basic leucine zipper 34", "gene_name": "BZIP34", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M2K4", "url": "https://www.uniprot.org/uniprotkb/Q9M2K4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 246, "end_pos": 246, "sequence_org": "P", "sequence_mut": "A", "comment": "Homodimerization and binding to G-box element.", "evidence": [ { "database": "UniProtKB", "id": "Q9M2K4", "url": "https://www.uniprot.org/uniprotkb/Q9M2K4" }, { "database": "PubMed", "id": "17719007", "url": "https://pubmed.ncbi.nlm.nih.gov/17719007" } ], "uniprot_canonical_ac": "Q9M2K4-1" }, { "start_pos": 230, "end_pos": 230, "sequence_org": "P", "sequence_mut": "A", "comment": "Homodimerization and binding to G-box element.", "evidence": [ { "database": "UniProtKB", "id": "F4IN23", "url": "https://www.uniprot.org/uniprotkb/F4IN23" }, { "database": "PubMed", "id": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.", "journal": "Plant Reprod.", "date": "2017", "authors": "Gibalov\u00e1 Ant\u00f3nia, Steinbachov\u00e1 Lenka, Hafidh Said, Bl\u00e1hov\u00e1 Veronika, Gadiou Zuzana, Michailidis Christos, M\u0171ller Karel, Pleskot Roman, Dup\u013e\u00e1kov\u00e1 Nikoleta, Honys David", "reference": { "type": "PubMed", "id": "27896439", "url": "https://pubmed.ncbi.nlm.nih.gov/27896439" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M2K4-1", "protein_name": "Basic leucine zipper 61", "gene_name": "BZIP61", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22873-1", "protein_name": "bZIP transcription factor 18", "gene_name": "BZIP18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IN23-1", "protein_name": "Basic leucine zipper 34", "gene_name": "BZIP34", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M2K4", "url": 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characterization of a novel monosaccharide transporter from Arabidopsis involved in vacuolar sugar transport.", "journal": "The Plant cell", "date": "2006-12", "authors": "Wormit Alexandra, Trentmann Oliver, Feifer Ingmar, Lohr Christian, Tjaden Joachim, Meyer Stefan, Schmidt Ulrike, Martinoia Enrico, Neuhaus H Ekkehard", "reference": { "type": "PubMed", "id": "17158605", "url": "https://pubmed.ncbi.nlm.nih.gov/17158605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SD00-1", "protein_name": "Monosaccharide-sensing protein 3", "gene_name": "MSSP3; TMT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPQ8-1", "protein_name": "Monosaccharide-sensing protein 2", "gene_name": "MSSP2; TMT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96290-1", "protein_name": "Monosaccharide-sensing protein 1", "gene_name": "MSSP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SD00", "url": "https://www.uniprot.org/uniprotkb/Q9SD00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17158605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Transport of primary metabolites across the plant vacuolar membrane.", "journal": "FEBS Lett.", "date": "2007", "authors": "Neuhaus H Ekkehard", "reference": { "type": "PubMed", "id": "17307167", "url": "https://pubmed.ncbi.nlm.nih.gov/17307167" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SD00-1", "protein_name": "Monosaccharide-sensing protein 3", "gene_name": "MSSP3; TMT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPQ8-1", "protein_name": "Monosaccharide-sensing protein 2", "gene_name": "MSSP2; TMT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96290-1", "protein_name": "Monosaccharide-sensing protein 1", "gene_name": "MSSP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SD00", "url": "https://www.uniprot.org/uniprotkb/Q9SD00" } ], "common_name": "Mouse-ear cress", "glygen_name": 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the United States of America", "date": "2004-05-18", "authors": "Wall Melisa K, Mitchenall Lesley A, Maxwell Anthony", "reference": { "type": "PubMed", "id": "15136745", "url": "https://pubmed.ncbi.nlm.nih.gov/15136745" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SS38-1", "protein_name": "DNA gyrase subunit B, chloroplastic", "gene_name": "GYRB1; GYRBC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BZ7-1", "protein_name": "DNA gyrase subunit B, mitochondrial", "gene_name": "GYRBM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAF6-1", "protein_name": "DNA gyrase subunit A, chloroplastic/mitochondrial", "gene_name": "GYRA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS38", "url": "https://www.uniprot.org/uniprotkb/Q9SS38" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.", "journal": "Nucleic Acids Res.", "date": "2002", "authors": "Pandey Ritu, M\u00fcller Andreas, Napoli Carolyn A, Selinger David A, Pikaard Craig S, Richards Eric J, Bender Judith, Mount David W, Jorgensen Richard A", "reference": { "type": "PubMed", "id": "12466527", "url": "https://pubmed.ncbi.nlm.nih.gov/12466527" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9S7T1-1", "protein_name": "Transcription factor GTE3, chloroplastic", "gene_name": "GTE3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS28-1", "protein_name": "Transcription factor GTE12", "gene_name": "GTE12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXA7-1", "protein_name": "Transcription factor GTE2", "gene_name": "GTE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXN8-1", "protein_name": "Histone deacetylase 17", "gene_name": "HDA17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FML2-1", 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"Q9FH09-1", "protein_name": "Histone deacetylase 7", "gene_name": "HDA7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LE42-1", "protein_name": "Histone acetyltransferase HAC5", "gene_name": "HAC5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWQ5-1", "protein_name": "Histone acetyltransferase HAC12", "gene_name": "HAC12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJT8-1", "protein_name": "Histone acetyltransferase type B catalytic subunit", "gene_name": "HAG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FT54-1", "protein_name": "Transcription factor GTE6", "gene_name": "GTE6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FYH1-1", "protein_name": "Histone acetyltransferase HAC2", "gene_name": "HAC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNC4-1", "protein_name": "Transcription factor GTE4", "gene_name": "GTE4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1D7-1", "protein_name": "Transcription factor GTE5, chloroplastic", "gene_name": "GTE5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q944K3-1", "protein_name": "Histone deacetylase 2", "gene_name": "HDA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7Y214-1", "protein_name": "Transcription factor GTE7", "gene_name": "GTE7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84XV2-1", "protein_name": "Transcription factor GTE1", "gene_name": "GTE1; IMB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX28-1", "protein_name": "Histone deacetylase 5", "gene_name": "HDA05; HDA5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H0W2-1", "protein_name": "Histone deacetylase 9", "gene_name": "HDA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LRK8-1", "protein_name": "Histone deacetylase 18", "gene_name": "HDA18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZR1-1", "protein_name": "Elongator complex protein 3", "gene_name": "HAG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q941D6-1", "protein_name": "Histone deacetylase 14, chloroplastic", "gene_name": "HDA14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9AR19-1", "protein_name": "Histone acetyltransferase GCN5", "gene_name": "HAG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGW9-1", "protein_name": "Transcription factor GTE10", "gene_name": "GTE10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLF7-1", "protein_name": "Histone acetyltransferase of the MYST family 1", "gene_name": "HAM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVE6-1", "protein_name": "Histone deacetylase HDT1", "gene_name": "HDA3; HDT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXD7-1", "protein_name": "Histone acetyltransferase of the MYST family 2", "gene_name": "HAM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LG11-1", "protein_name": "Histone acetyltransferase HAC4", "gene_name": "HAC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK27-1", "protein_name": "Transcription factor GTE8", "gene_name": "GTE8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6PUA2-1", "protein_name": "Transcription initiation factor TFIID subunit 1b", "gene_name": "HAF2; TAF1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M4T3-1", "protein_name": "Histone deacetylase HDT4", "gene_name": "HDT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56WH4-1", "protein_name": "Histone deacetylase HDT2", "gene_name": "HDT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZR5-1", "protein_name": "Histone deacetylase HDT3", "gene_name": "HDT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXJ1-1", "protein_name": "Histone deacetylase 15", "gene_name": "HDA15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22446-1", "protein_name": "Histone deacetylase 19", "gene_name": "HD1; HDA19", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9S7T1", "url": "https://www.uniprot.org/uniprotkb/Q9S7T1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12466527", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.", "journal": "The Journal of biological chemistry", "date": "2008-08-01", "authors": "Garcia-Dominguez Mario, March-Diaz Rosana, Reyes Jose C", "reference": { "type": "PubMed", "id": "18502747", "url": "https://pubmed.ncbi.nlm.nih.gov/18502747" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9S7T1-1", "protein_name": "Transcription factor GTE3, chloroplastic", "gene_name": "GTE3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1D7-1", "protein_name": "Transcription factor GTE5, chloroplastic", "gene_name": "GTE5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42551-1", "protein_name": "SUMO-conjugating enzyme SCE1", "gene_name": "SCE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q680Q4-1", "protein_name": "E3 SUMO-protein ligase SIZ1", "gene_name": "SIZ1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9S7T1", "url": "https://www.uniprot.org/uniprotkb/Q9S7T1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 94, "end_pos": 94, "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q42551", "url": "https://www.uniprot.org/uniprotkb/Q42551" }, { "database": "PubMed", "id": "18502747", "url": "https://pubmed.ncbi.nlm.nih.gov/18502747" } ], "uniprot_canonical_ac": "Q42551-1" }, { "start_pos": 100, "end_pos": 100, "sequence_org": "K", "sequence_mut": "R", "comment": "Strongly reduces autosumoylation; when associated with R-488.", "evidence": [ { "database": "UniProtKB", "id": "Q680Q4", "url": "https://www.uniprot.org/uniprotkb/Q680Q4" }, { "database": "PubMed", "id": "18502747", "url": "https://pubmed.ncbi.nlm.nih.gov/18502747" } ], "uniprot_canonical_ac": "Q680Q4-1" }, { "start_pos": 488, "end_pos": 488, "sequence_org": "K", "sequence_mut": "R", "comment": "Strongly reduces autosumoylation; when associated with R-100.", "evidence": [ { "database": "UniProtKB", "id": "Q680Q4", "url": "https://www.uniprot.org/uniprotkb/Q680Q4" }, { "database": "PubMed", "id": "18502747", "url": "https://pubmed.ncbi.nlm.nih.gov/18502747" } ], "uniprot_canonical_ac": "Q680Q4-1" } ], "record_id": "pubmed.18502747", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LOW PSII ACCUMULATION1 is involved in efficient assembly of photosystem II in Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2006-04", "authors": "Peng Lianwei, Ma Jinfang, Chi Wei, Guo Jinkui, Zhu Shuyong, Lu Qingtao, Lu Congming, Zhang Lixin", "reference": { "type": "PubMed", "id": "16531500", "url": "https://pubmed.ncbi.nlm.nih.gov/16531500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SRY4-1", "protein_name": "Protein LOW PSII ACCUMULATION 1, chloroplastic", "gene_name": "LPA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SRY4", "url": "https://www.uniprot.org/uniprotkb/Q9SRY4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16531500", 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Bart P H J, de Wit Pierre J G M, Angenent Gerco C, Fiers Martijn", "reference": { "type": "PubMed", "id": "19897604", "url": "https://pubmed.ncbi.nlm.nih.gov/19897604" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SHI3-1", "protein_name": "Receptor-like protein 2", "gene_name": "RLP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHI4-1", "protein_name": "Receptor-like protein 3", "gene_name": "RLP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80809-1", "protein_name": "Receptor-like protein CLAVATA2", "gene_name": "CLV2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9H7-1", "protein_name": "Receptor-like protein 12", "gene_name": "RLP12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SHI3", "url": "https://www.uniprot.org/uniprotkb/Q9SHI3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19897604", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome.", "journal": "Plant J.", "date": "1999", "authors": "Fu H, Doelling J H, Rubin D M, Vierstra R D", "reference": { "type": "PubMed", "id": "10417703", "url": "https://pubmed.ncbi.nlm.nih.gov/10417703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04019-1", "protein_name": "26S proteasome regulatory subunit 6A homolog B", "gene_name": "RPT5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEI2-1", "protein_name": "26S proteasome regulatory subunit 6A homolog A", "gene_name": "RPT5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEI3-1", "protein_name": "26S proteasome regulatory subunit 10B homolog A", "gene_name": "RPT4A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEI4-1", "protein_name": "26S proteasome regulatory subunit 6B homolog", "gene_name": "RPT3", 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"name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SSB4", "url": "https://www.uniprot.org/uniprotkb/Q9SSB4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10417703", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Biol. Chem.", "date": "2010", "authors": "Book Adam J, Gladman Nicholas P, Lee Sang-Sook, Scalf Mark, Smith Lloyd M, Vierstra Richard D", "reference": { "type": "PubMed", "id": "20516081", "url": "https://pubmed.ncbi.nlm.nih.gov/20516081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23715-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PAG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04019-1", "protein_name": "26S proteasome regulatory subunit 6A homolog B", "gene_name": "RPT5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEI2-1", "protein_name": "26S proteasome regulatory 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"O23708-1", "protein_name": "Proteasome subunit alpha type-2-A", "gene_name": "PAB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23714-1", "protein_name": "Proteasome subunit beta type-2-A", "gene_name": "PBD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24616-1", "protein_name": "Proteasome subunit alpha type-7-B", "gene_name": "PAD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48844-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1 homolog A", "gene_name": "RPN2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81146-1", "protein_name": "Proteasome subunit alpha type-6-A", "gene_name": "PAA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C774-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 7 homolog B", "gene_name": "MEE34; RPN8B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L4A7-1", "protein_name": "Proteasome subunit alpha type-2-B", "gene_name": "PAB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5U3-1", "protein_name": "26S proteasome regulatory subunit 8 homolog A", "gene_name": "RPT6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIB6-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 12 homolog A", "gene_name": "EMB2107; RPN5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWF0-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 13 homolog A", "gene_name": "MRA19.2; RPN9A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Y35-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6 homolog", "gene_name": "RPN7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BQ2-1", "protein_name": "26S proteasome regulatory subunit 8 homolog B", "gene_name": "RPT6B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LT08-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 14 homolog", "gene_name": "MQM1.19; RPN11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIP2-1", "protein_name": "Proteasome subunit beta type-5-B", "gene_name": "PBE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LP45-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 11 homolog", "gene_name": "RPN6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQR8-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3 homolog B", "gene_name": "RPN3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MAT0-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1 homolog B", "gene_name": "RPN2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB5-1", "protein_name": "26S proteasome regulatory subunit 7 homolog A", "gene_name": "RPT1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI05-1", "protein_name": "Proteasome subunit beta type-3-A", "gene_name": "PBC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGW3-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 8 homolog A", "gene_name": "RPN12A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JJE5-1", "protein_name": "Putative proteasome subunit alpha type-4-B", "gene_name": "PAC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7DLR9-1", "protein_name": "Proteasome subunit beta type-4", "gene_name": "PBG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VWK0-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 12 homolog B", "gene_name": "RPN5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23710-1", "protein_name": "Proteasome subunit beta type-7-A", "gene_name": "PBB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24412-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 7 homolog A", "gene_name": "RPN8A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23712-1", "protein_name": "Proteasome subunit alpha type-1-B", "gene_name": "PAF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81148-1", "protein_name": "Proteasome subunit alpha type-4-A", "gene_name": "PAC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81149-1", "protein_name": "Proteasome subunit alpha type-5-A", "gene_name": "PAE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42742-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PBF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LD27-1", "protein_name": "Proteasome subunit beta type-6", "gene_name": "PBA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P30186-1", "protein_name": "Proteasome subunit alpha type-7-A", "gene_name": "PAD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P34066-1", "protein_name": "Proteasome subunit alpha type-1-A", "gene_name": "PAF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNU4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3 homolog A", "gene_name": "RPN3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYA6-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 13 homolog B", "gene_name": "RPN9B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7DLS1-1", "protein_name": "Proteasome subunit beta type-7-B", "gene_name": "PBB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHY0-1", "protein_name": "Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B", "gene_name": "RPN12B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42134-1", "protein_name": "Proteasome subunit alpha type-5-B", "gene_name": "PAE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6XJG8-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 2 homolog B", "gene_name": "RPN1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MAK9-1", "protein_name": "26S proteasome regulatory subunit S10B homolog B", "gene_name": "RPT4B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIV2-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 2 homolog A", "gene_name": "RPN1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL67-1", "protein_name": "26S proteasome regulatory subunit 4 homolog B", "gene_name": "RPT2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZD4-1", "protein_name": "26S proteasome regulatory subunit 4 homolog A", "gene_name": "RPT2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SSB4", "url": "https://www.uniprot.org/uniprotkb/Q9SSB4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20516081", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A nitrite transporter associated with nitrite uptake by higher plant chloroplasts.", "journal": "Plant & cell physiology", "date": "2007-07", "authors": "Sugiura Miwa, Georgescu Mihaela N, Takahashi Masaaki", "reference": { "type": "PubMed", "id": "17566055", "url": "https://pubmed.ncbi.nlm.nih.gov/17566055" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SX20-1", "protein_name": "Protein NRT1/ PTR FAMILY 3.1", "gene_name": "NPF3.1; NPF31", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX20", "url": "https://www.uniprot.org/uniprotkb/Q9SX20" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17566055", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chloroplast nitrite uptake is enhanced in Arabidopsis PII mutants.", "journal": "FEBS Lett.", "date": "2008", "authors": "Ferrario-M\u00e9ry Sylvie, Meyer Christian, Hodges Michael", "reference": { "type": "PubMed", "id": "18325336", "url": "https://pubmed.ncbi.nlm.nih.gov/18325336" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SX20-1", "protein_name": "Protein NRT1/ PTR FAMILY 3.1", "gene_name": "NPF3.1; NPF31", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZST4-1", "protein_name": "Nitrogen regulatory protein P-II homolog", "gene_name": "GLB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX20", "url": "https://www.uniprot.org/uniprotkb/Q9SX20" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18325336", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"AHP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L9T7-1", "protein_name": "Histidine-containing phosphotransfer protein 5", "gene_name": "AHP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5U0-1", "protein_name": "Histidine kinase 4", "gene_name": "AHK4; WOL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5U2-1", "protein_name": "Histidine kinase 2", "gene_name": "AHK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNV9-1", "protein_name": "Histidine-containing phosphotransfer protein 1", "gene_name": "AHP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5U1-1", "protein_name": "Histidine kinase 3", "gene_name": "AHK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAZ5-1", "protein_name": "Histidine-containing phosphotransfer protein 3", "gene_name": "AHP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXL4-1", "protein_name": "Histidine kinase 1", "gene_name": "AHK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SSC9", "url": "https://www.uniprot.org/uniprotkb/Q9SSC9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12068096", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure-function analysis of Arabidopsis thaliana histidine kinase AHK5 bound to its cognate phosphotransfer protein AHP1.", "journal": "Mol. Plant", "date": "2013", "authors": "Bauer Johannes, Reiss Kerstin, Veerabagu Manikandan, Heunemann Michael, Harter Klaus, Stehle Thilo", "reference": { "type": "PubMed", "id": "23132142", "url": "https://pubmed.ncbi.nlm.nih.gov/23132142" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SSC9-1", "protein_name": "Pseudo histidine-containing phosphotransfer protein 6", "gene_name": "AHP6; HP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNV8-1", "protein_name": "Histidine-containing phosphotransfer protein 2", "gene_name": "AHP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L9T7-1", "protein_name": "Histidine-containing phosphotransfer protein 5", "gene_name": "AHP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNV9-1", "protein_name": "Histidine-containing phosphotransfer protein 1", "gene_name": "AHP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3S4A7-1", "protein_name": "Histidine kinase 5", "gene_name": "AHK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAZ5-1", "protein_name": "Histidine-containing phosphotransfer protein 3", "gene_name": "AHP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SSC9", "url": "https://www.uniprot.org/uniprotkb/Q9SSC9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23132142", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]