[ { "title": "Developmental control of H+/amino acid permease gene expression during seed development of Arabidopsis.", "journal": "Plant J.", "date": "1998", "authors": "Hirner B, Fischer W N, Rentsch D, Kwart M, Frommer W B", "reference": { "type": "PubMed", "id": "9675899", "url": "https://pubmed.ncbi.nlm.nih.gov/9675899" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q38967-1", "protein_name": "Amino acid permease 2", "gene_name": "AAP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42400-1", "protein_name": "Amino acid permease 1", "gene_name": "AAP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38967", "url": "https://www.uniprot.org/uniprotkb/Q38967" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9675899", "abstract": "", 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Micheelsen Pernille, Rocher Anne, Petersen Morten, Newman Mari-Anne, Bj\u00f8rn Nielsen Henrik, Hirt Heribert, Somssich Imre, Mattsson Ole, Mundy John", "reference": { "type": "PubMed", "id": "15990873", "url": "https://pubmed.ncbi.nlm.nih.gov/15990873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39025-1", "protein_name": "Mitogen-activated protein kinase 5", "gene_name": "MPK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22921-1", "protein_name": "Probable WRKY transcription factor 25", "gene_name": "WRKY25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39024-1", "protein_name": "Mitogen-activated protein kinase 4", "gene_name": "MPK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGD5-1", "protein_name": "Protein MKS1", "gene_name": "MKS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8P5-1", "protein_name": "Probable WRKY transcription factor 33", "gene_name": "WRKY33", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39025", "url": "https://www.uniprot.org/uniprotkb/Q39025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 30, "end_pos": 30, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "PubMed", "id": "15990873", "url": "https://pubmed.ncbi.nlm.nih.gov/15990873" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" }, { "database": "PubMed", "id": "21203436", "url": "https://pubmed.ncbi.nlm.nih.gov/21203436" } ], "site_lbl": "Ser30", "uniprot_canonical_ac": "Q8LGD5-1" } ], "record_id": "pubmed.15990873", 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"authors": "Kosetsu Ken, Matsunaga Sachihiro, Nakagami Hirofumi, Colcombet Jean, Sasabe Michiko, Soyano Takashi, Takahashi Yuji, Hirt Heribert, Machida Yasunori", "reference": { "type": "PubMed", "id": "21098735", "url": "https://pubmed.ncbi.nlm.nih.gov/21098735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39025-1", "protein_name": "Mitogen-activated protein kinase 5", "gene_name": "MPK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39024-1", "protein_name": "Mitogen-activated protein kinase 4", "gene_name": "MPK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQQ9-1", "protein_name": "Mitogen-activated protein kinase 13", "gene_name": "MPK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJV0-1", "protein_name": "Mitogen-activated protein kinase kinase 6", "gene_name": "MKK6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { 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"authors": "Haslam Tegan M, Ma\u00f1as-Fern\u00e1ndez Aurora, Zhao Lifang, Kunst Ljerka", "reference": { "type": "PubMed", "id": "22930748", "url": "https://pubmed.ncbi.nlm.nih.gov/22930748" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39048-1", "protein_name": "Protein ECERIFERUM 2", "gene_name": "CER2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIS1-1", "protein_name": "Protein ECERIFERUM 26-like", "gene_name": "CER26L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM9-1", "protein_name": "Protein ECERIFERUM 26", "gene_name": "CER26", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39048", "url": "https://www.uniprot.org/uniprotkb/Q39048" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22930748", "abstract": "", 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St\u00e9phanie, Bernard Am\u00e9lie, Sorel Maud, Pervent Marjorie, Vile Denis, Haslam Richard P, Napier Johnathan A, Lessire Ren\u00e9, Domergue Fr\u00e9d\u00e9ric, Joub\u00e8s J\u00e9r\u00f4me", "reference": { "type": "PubMed", "id": "23384041", "url": "https://pubmed.ncbi.nlm.nih.gov/23384041" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39048-1", "protein_name": "Protein ECERIFERUM 2", "gene_name": "CER2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIS1-1", "protein_name": "Protein ECERIFERUM 26-like", "gene_name": "CER26L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM9-1", "protein_name": "Protein ECERIFERUM 26", "gene_name": "CER26", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39048", "url": "https://www.uniprot.org/uniprotkb/Q39048" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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Biol. Chem.", "date": "1995", "authors": "Hoff T, Schnorr K M, Meyer C, Caboche M", "reference": { "type": "PubMed", "id": "7890743", "url": "https://pubmed.ncbi.nlm.nih.gov/7890743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39056-1", "protein_name": "Cyclic pyranopterin monophosphate synthase", "gene_name": "CNX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39055-1", "protein_name": "GTP 3',8-cyclase", "gene_name": "CNX2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39056", "url": "https://www.uniprot.org/uniprotkb/Q39056" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7890743", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Three types of nuclear genes encoding chloroplast RNA-binding proteins (cp29, cp31 and cp33) are present in Arabidopsis thaliana: presence of cp31 in chloroplasts and its homologue in nuclei/cytoplasms.", "journal": "Plant Mol. Biol.", "date": "1995", "authors": "Ohta M, Sugita M, Sugiura M", "reference": { "type": "PubMed", "id": "7894017", "url": "https://pubmed.ncbi.nlm.nih.gov/7894017" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39061-1", "protein_name": "RNA-binding protein CP33, chloroplastic", "gene_name": "CP33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q04836-1", "protein_name": "31 kDa ribonucleoprotein, chloroplastic", "gene_name": "CP31A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43349-1", "protein_name": "29 kDa ribonucleoprotein, chloroplastic", "gene_name": "CP29A; CP29", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39061", "url": "https://www.uniprot.org/uniprotkb/Q39061" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Kawamukai M, Kamiya Y", "reference": { "type": "PubMed", "id": "10759500", "url": "https://pubmed.ncbi.nlm.nih.gov/10759500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39108-1", "protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic", "gene_name": "GGR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04046-1", "protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2", "gene_name": "GGPPS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22043-1", "protein_name": "Geranylgeranyl pyrophosphate synthase 6, mitochondrial", "gene_name": "GGPP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P34802-1", "protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic", "gene_name": "GGPPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LUD9-1", "protein_name": "Geranylgeranyl pyrophosphate 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"protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2", "gene_name": "GGPPS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P34802-1", "protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic", "gene_name": "GGPPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LUE1-1", "protein_name": "Geranylgeranyl pyrophosphate synthase 9, chloroplastic", "gene_name": "GGPPS9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39108", "url": "https://www.uniprot.org/uniprotkb/Q39108" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19482937", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2010", "authors": "Tanaka Ryouichi, Rothbart Maxi, Oka Seiko, Takabayashi Atsushi, Takahashi Kaori, Shibata Masaru, Myouga Fumiyoshi, Motohashi Reiko, Shinozaki Kazuo, Grimm Bernhard, Tanaka Ayumi", "reference": { "type": "PubMed", "id": "20823244", "url": "https://pubmed.ncbi.nlm.nih.gov/20823244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39108-1", "protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic", "gene_name": "GGR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYX1-1", "protein_name": "Light-harvesting complex-like protein 3 isotype 1, chloroplastic", "gene_name": "LIL3.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NKS4-1", "protein_name": "Light-harvesting complex-like protein 3 isotype 2, chloroplastic", "gene_name": "LIL3.2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39108", "url": "https://www.uniprot.org/uniprotkb/Q39108" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20823244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Functional analysis of the group 4 late embryogenesis abundant proteins reveals their relevance in the adaptive response during water deficit in Arabidopsis.", "journal": "Plant physiology", "date": "2010-09", "authors": "Olvera-Carrillo Yadira, Campos Francisco, Reyes Jos\u00e9 Luis, Garciarrubio Alejandro, Covarrubias Alejandra A", "reference": { "type": "PubMed", "id": "20668063", "url": "https://pubmed.ncbi.nlm.nih.gov/20668063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39138-1", "protein_name": "Late embryogenesis abundant protein 6", "gene_name": "LEA6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96273-1", "protein_name": "Late embryogenesis abundant protein 18", "gene_name": "LEA18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FG31-1", "protein_name": "Late embryogenesis abundant protein 46", "gene_name": "LEA46", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 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[] } ] }, { "title": "Cloning of a cDNA encoding the 21.2 kDa oleosin isoform from Arabidopsis thaliana and a study of its expression in a mutant defective in diacylglycerol acyltransferase activity.", "journal": "Plant Mol. Biol.", "date": "1996", "authors": "Zou J, Brokx S J, Taylor D C", "reference": { "type": "PubMed", "id": "8756608", "url": "https://pubmed.ncbi.nlm.nih.gov/8756608" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39165-1", "protein_name": "Oleosin 21.2 kDa", "gene_name": "MPO12.17", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39165", "url": "https://www.uniprot.org/uniprotkb/Q39165" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8756608", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PRH 75, a new nuclear-localized member of the DEAD-box protein family from higher plants.", "journal": "Mol. Cell. Biol.", "date": "1997", "authors": "Lorkovi\u0107 Z J, Herrmann R G, Oelm\u00fcller R", "reference": { "type": "PubMed", "id": "9121476", "url": "https://pubmed.ncbi.nlm.nih.gov/9121476" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39189-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 7", "gene_name": "RH7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39189", "url": "https://www.uniprot.org/uniprotkb/Q39189" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9121476", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The low molecular mass PsbW protein is involved in the stabilization of the dimeric photosystem II complex in Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2000-12-01", "authors": "Shi L X, Lorkovi\u0107 Z J, Oelmuller R, Schroder W P", "reference": { "type": "PubMed", "id": "10950961", "url": "https://pubmed.ncbi.nlm.nih.gov/10950961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39194-1", "protein_name": "Photosystem II reaction 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"2019", "authors": "Kekez Mario, Zanki Vladimir, Kekez Ivana, Baranasic Jurica, Hodnik Vesna, Duch\u00eane Anne-Marie, Anderluh Gregor, Gruic-Sovulj Ita, Matkovi\u0107-\u010calogovi\u0107 Dubravka, Weygand-Durasevic Ivana, Rokov-Plavec Jasmina", "reference": { "type": "PubMed", "id": "30570212", "url": "https://pubmed.ncbi.nlm.nih.gov/30570212" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39230-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "F21A20_180", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39230", "url": "https://www.uniprot.org/uniprotkb/Q39230" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.30570212", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Exp. Bot.", "date": "2018", "authors": "Huang Jingjing, Niazi Adnan Khan, Young David, Rosado Leonardo Astolfi, Vertommen Didier, Bodra Nandita, Abdelgawwad Mohamed Ragab, Vignols Florence, Wei Bo, Wahni Khadija, Bashandy Talaat, Bariat Laetitia, Van Breusegem Frank, Messens Joris, Reichheld Jean-Philippe", "reference": { "type": "PubMed", "id": "29194485", "url": "https://pubmed.ncbi.nlm.nih.gov/29194485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39239-1", "protein_name": "Thioredoxin H4", "gene_name": "TRX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P29448-1", "protein_name": "Thioredoxin H1", "gene_name": "TRX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42403-1", "protein_name": "Thioredoxin H3", "gene_name": "TRX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93819-1", "protein_name": "Malate dehydrogenase 1, cytoplasmic", "gene_name": "MDH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38879-1", "protein_name": "Thioredoxin H2", "gene_name": "TRX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39241-1", "protein_name": "Thioredoxin H5", "gene_name": "TRX5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39239", "url": "https://www.uniprot.org/uniprotkb/Q39239" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29194485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for five divergent thioredoxin h sequences in Arabidopsis thaliana.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1995", "authors": "Rivera-Madrid R, Mestres D, Marinho P, Jacquot J P, Decottignies P, Miginiac-Maslow M, Meyer Y", "reference": { "type": "PubMed", "id": "7777559", "url": "https://pubmed.ncbi.nlm.nih.gov/7777559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39239-1", "protein_name": "Thioredoxin H4", "gene_name": "TRX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42403-1", "protein_name": "Thioredoxin H3", "gene_name": "TRX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38879-1", "protein_name": "Thioredoxin H2", "gene_name": "TRX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39241-1", "protein_name": "Thioredoxin H5", "gene_name": "TRX5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39239", "url": "https://www.uniprot.org/uniprotkb/Q39239" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7777559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.", "journal": "The Plant cell", "date": "2009-01", "authors": "Okuda Kenji, Chateigner-Boutin Anne-Laure, Nakamura Takahiro, Delannoy Etienne, Sugita Mamoru, Myouga Fumiyoshi, Motohashi Reiko, Shinozaki Kazuo, Small Ian, Shikanai Toshiharu", "reference": { "type": "PubMed", "id": "19182104", "url": "https://pubmed.ncbi.nlm.nih.gov/19182104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E6Q1-1", "protein_name": "Pentatricopeptide repeat-containing protein At1g11290, chloroplastic", "gene_name": "PCMP-H40", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQW5-1", "protein_name": "Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial", "gene_name": "PCMP-H51", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E6Q1", "url": "https://www.uniprot.org/uniprotkb/Q3E6Q1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19182104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles.", "journal": "J. Exp. Bot.", "date": "2009", "authors": "Bouwmeester Klaas, Govers Francine", "reference": { "type": "PubMed", "id": "19773388", "url": "https://pubmed.ncbi.nlm.nih.gov/19773388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E884-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.10", "gene_name": "LECRK110", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1G3-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase I.6", "gene_name": "LECRK-I6; LECRK16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR87-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase VI.1", "gene_name": "LECRK-VI1; LECRK61", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZD5-1", "protein_name": "L-type lectin-domain containing receptor kinase V.9", "gene_name": "LECRK-V9; LECRK59", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9U1-1", "protein_name": "L-type lectin-domain containing receptor kinase VII.1", "gene_name": "LECRK-VII1; LECRK71", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSR8-1", "protein_name": "L-type lectin-domain containing receptor kinase I.9", "gene_name": "LECRK19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22834-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase V.3", "gene_name": "LECRK-V3; LECRK53", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04533-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase V.2", "gene_name": "LECRK52", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04534-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase V.1", "gene_name": "LECRK51", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48837-1", "protein_name": "Receptor like protein kinase S.2", "gene_name": "LECRKS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49445-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase VII.2", "gene_name": "LECRK72", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81292-1", "protein_name": "L-type lectin-domain containing receptor kinase IV.3", "gene_name": "LECRK43", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STF0-1", "protein_name": "Receptor like protein kinase S.3", "gene_name": "LECRKS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW09-1", "protein_name": "Probable inactive L-type lectin-domain containing receptor kinase III.1", "gene_name": "LECRK31", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIF0-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase II.2", "gene_name": "LECRK-II2; LECRK22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FG33-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase S.5", "gene_name": "LECRK-S5; LECRKS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIF1-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase II.1", "gene_name": "LECRK21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LEA3-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase V.6", "gene_name": "LECRK-V6; LECRK56", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJI4-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.11", "gene_name": "LECRK111", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFH9-1", "protein_name": "L-type lectin-domain containing receptor kinase VIII.1", "gene_name": "LECRK81", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1Z9-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase V.8", "gene_name": "LECRK58", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M3D7-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.4", "gene_name": "LECRK14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW11-1", "protein_name": "Putative inactive L-type lectin-domain containing receptor kinase III.2", "gene_name": "LECRK32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZR79-1", "protein_name": "L-type lectin-domain containing receptor kinase V.7", "gene_name": "LECRK57", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7FK82-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase I.2", "gene_name": "LECRK12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80939-1", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "gene_name": "LECRK41", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81291-1", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "gene_name": "LECRK44", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96285-1", "protein_name": "L-type lectin-domain containing receptor kinase V.5", "gene_name": "LECRK55", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHG4-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase S.7", "gene_name": "LECRKS7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHX3-1", "protein_name": "L-type lectin-domain containing receptor kinase S.6", "gene_name": "LECRKS6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSL5-1", "protein_name": "L-type lectin-domain containing receptor kinase IX.2", "gene_name": "LECRK92", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSR9-1", "protein_name": "L-type lectin-domain containing receptor kinase I.8", "gene_name": "LECRK18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSS0-1", "protein_name": "L-type lectin-domain containing receptor kinase I.7", "gene_name": "LECRK17", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q66GN2-1", "protein_name": "Lectin-domain containing receptor kinase VI.4", "gene_name": "LECRK64", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22833-1", "protein_name": "L-type lectin-domain containing receptor kinase V.4", "gene_name": "LECRK-V4; LECRK54", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M020-1", "protein_name": "Lectin-domain containing receptor kinase VI.3", "gene_name": "LECRK-VI3; LECRK63", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXA5-1", "protein_name": "L-type lectin-domain containing receptor kinase IX.1", "gene_name": "LECRK91", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYX1-1", "protein_name": "L-type lectin-domain containing receptor kinase VIII.2", "gene_name": "LECRK82", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M021-1", "protein_name": "L-type lectin-domain containing receptor kinase VI.2", "gene_name": "LECRK62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M1G4-1", "protein_name": "Probable L-type lectin-domain containing receptor kinase I.5", "gene_name": "LECRK15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S4-1", "protein_name": "L-type lectin-domain containing receptor kinase S.4", "gene_name": "LECRKS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M345-1", "protein_name": "L-type lectin-domain containing receptor kinase IV.2", "gene_name": "LECRK42", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M3D8-1", "protein_name": "L-type lectin-domain containing receptor kinase I.3", "gene_name": "LECRK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M3E5-1", "protein_name": "Putative L-type lectin-domain containing receptor kinase I.1", "gene_name": "LECRK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9E0-1", "protein_name": "L-type lectin-domain containing receptor kinase S.1", "gene_name": "LECRKS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E884", "url": "https://www.uniprot.org/uniprotkb/Q3E884" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19773388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The third myrosinase gene TGG3 in Arabidopsis thaliana is a pseudogene specifically expressed in stamen and petal.", "journal": "Physiol. Plantarum", "date": "2002", "authors": "Zhang Jiaming, Pontoppidan Bo, Xue Jiaping, Rask Lars, Meijer Johan", "reference": { "type": "PubMed", "id": "12010464", "url": "https://pubmed.ncbi.nlm.nih.gov/12010464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E8E5-1", "protein_name": "Putative myrosinase 3", "gene_name": "TGG3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E8E5", "url": "https://www.uniprot.org/uniprotkb/Q3E8E5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12010464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis.", "journal": "Plant Cell", "date": "2011", "authors": "Iwata Eriko, Ikeda Saki, Matsunaga Sachihiro, Kurata Mariko, Yoshioka Yasushi, Criqui Marie-Claire, Genschik Pascal, Ito Masaki", "reference": { "type": "PubMed", "id": "22167058", "url": "https://pubmed.ncbi.nlm.nih.gov/22167058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E906-1", "protein_name": "Cell division cycle 20.5, cofactor of APC complex", "gene_name": "CDC20-5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L3Z8-1", "protein_name": "Protein FIZZY-RELATED 2", "gene_name": "FZR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPL5-1", "protein_name": "Protein FIZZY-RELATED 3", "gene_name": "FZR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48533-1", "protein_name": "Protein POLYCHOME", "gene_name": "PYM", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZA4-1", "protein_name": "Cell division cycle 20.1, cofactor of APC complex", "gene_name": "CDC20-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2R1-1", "protein_name": "Protein GIGAS CELL1", "gene_name": "GIG1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E906", "url": "https://www.uniprot.org/uniprotkb/Q3E906" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22167058", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor.", "journal": "Genes Dev.", "date": "2011", "authors": "Jaillais Yvon, Hothorn Michael, Belkhadir Youssef, Dabi Tsegaye, Nimchuk Zachary L, Meyerowitz Elliot M, Chory Joanne", "reference": { "type": "PubMed", "id": "21289069", "url": "https://pubmed.ncbi.nlm.nih.gov/21289069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E936-1", "protein_name": "Probable membrane-associated kinase regulator 1", "gene_name": "MAKR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SH58-1", "protein_name": "Probable membrane-associated kinase regulator 2", "gene_name": "MAKR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLX4-1", "protein_name": "Membrane-associated kinase regulator 5", "gene_name": "MAKR5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JK8-1", "protein_name": "Probable membrane-associated kinase regulator 6", "gene_name": "MAKR6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80624-1", "protein_name": "Probable membrane-associated kinase regulator 4", "gene_name": "MAKR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMZ0-1", "protein_name": "BRI1 kinase inhibitor 1", "gene_name": "BKI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUS8-1", "protein_name": "Probable membrane-associated kinase regulator 3", "gene_name": "MAKR3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E936", "url": "https://www.uniprot.org/uniprotkb/Q3E936" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 179, "end_pos": 180, "sequence_org": "RK", "sequence_mut": "AA", "comment": "No effect on subcellular location. Cytosolic only; when associated with 197-A-A-198 or 197-A-A-198 and 209-A-A-210 and 218-A-A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ0" }, { "database": "PubMed", "id": "21289069", "url": "https://pubmed.ncbi.nlm.nih.gov/21289069" } ], "uniprot_canonical_ac": "Q9FMZ0-1" }, { "start_pos": 197, "end_pos": 198, "sequence_org": "KK", "sequence_mut": "AA", "comment": "Reduced cell membrane localization. Cytosolic only; when associated with 179-A-A-180 or 179-A-A-180 and 209-A-A-210 and 218-A-A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ0" }, { "database": "PubMed", "id": "21289069", "url": "https://pubmed.ncbi.nlm.nih.gov/21289069" } ], "uniprot_canonical_ac": "Q9FMZ0-1" }, { "start_pos": 209, "end_pos": 210, "sequence_org": "KK", "sequence_mut": "AA", "comment": "Reduced cell membrane localization. Cytosolic only; when associated with 218-A-A-219 or 179-A-A-180 and 197-A-A-198 and 218-A-A-219.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ0" }, { "database": "PubMed", "id": "21289069", "url": "https://pubmed.ncbi.nlm.nih.gov/21289069" } ], "uniprot_canonical_ac": "Q9FMZ0-1" }, { "start_pos": 211, "end_pos": 211, "sequence_org": "Y", "sequence_mut": "D", "comment": "Cytosolic. Loss of membrane localization in absence of brassinosteroid treatment.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ0" }, { "database": "PubMed", "id": "21289069", "url": "https://pubmed.ncbi.nlm.nih.gov/21289069" } ], "uniprot_canonical_ac": "Q9FMZ0-1" }, { "start_pos": 211, "end_pos": 211, "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of cytosolic localization. No dissociation from the membrane upon brassinosteroid treatment.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMZ0", "url": "https://www.uniprot.org/uniprotkb/Q9FMZ0" }, { "database": "PubMed", "id": "21289069", "url": "https://pubmed.ncbi.nlm.nih.gov/21289069" } ], "uniprot_canonical_ac": "Q9FMZ0-1" }, { "start_pos": 218, "end_pos": 219, "sequence_org": "KR", "sequence_mut": "AA", "comment": "No effect on subcellular location. 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Natl. Acad. Sci. U.S.A.", "date": "2001", "authors": "Shiu S H, Bleecker A B", "reference": { "type": "PubMed", "id": "11526204", "url": "https://pubmed.ncbi.nlm.nih.gov/11526204" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3ECH2-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8", "gene_name": "LRK10L-2.8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HQ20-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5", "gene_name": "LRK10L-2.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HQ17-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4", "gene_name": "LRK10L-1.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HQ23-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7", "gene_name": "LRK10L-2.7; LRK10L2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HQ22-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4", "gene_name": "LRK10L-2.4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KA50-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2", "gene_name": "LRK10L-2.2; MXA21.130", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I3V3-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5", "gene_name": "LRK10L-1.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KA51-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3", "gene_name": "LRK10L-2.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VYG0-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3", "gene_name": "LRK10L-1.3; LRK10L3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6K9-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1", "gene_name": "LRK10L-1.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FF31-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1", "gene_name": "LRK10L-2.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0C5E2-1", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "gene_name": "BEE1; LRK10L-1.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "D7SFH9-1", "protein_name": "Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4", "gene_name": "LRK10L-2.6; SNC4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ECH2", "url": "https://www.uniprot.org/uniprotkb/Q3ECH2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11526204", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 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AtmenG mutant.", "journal": "The Journal of biological chemistry", "date": "2006-12-29", "authors": "Lohmann Antje, Sch\u00f6ttler Mark Aurel, Br\u00e9h\u00e9lin Claire, Kessler Felix, Bock Ralph, Cahoon Edgar B, D\u00f6rmann Peter", "reference": { "type": "PubMed", "id": "17082184", "url": "https://pubmed.ncbi.nlm.nih.gov/17082184" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3ED65-1", "protein_name": "2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic", "gene_name": "MENG", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ED65", "url": "https://www.uniprot.org/uniprotkb/Q3ED65" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17082184", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Jos\u00e9 Manuel, Micol Jos\u00e9 Luis", "reference": { "type": "PubMed", "id": "29915151", "url": "https://pubmed.ncbi.nlm.nih.gov/29915151" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3ED68-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein ICU11", "gene_name": "ICU11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DO23-1", "protein_name": "2-oxoglutarate and iron-dependent oxygenase domain-containing protein CP2", "gene_name": "CP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3ED68", "url": "https://www.uniprot.org/uniprotkb/Q3ED68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29915151", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial localization of AtOXA1, an Arabidopsis homologue of yeast Oxa1p involved in the insertion and assembly of protein complexes in mitochondrial inner membrane.", "journal": "Plant Cell Physiol.", "date": "2000", "authors": "Sakamoto W, Spielewoy N, Bonnard G, Murata M, Wintz H", "reference": { "type": "PubMed", "id": "11148275", "url": "https://pubmed.ncbi.nlm.nih.gov/11148275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42191-1", "protein_name": "Mitochondrial inner membrane protein OXA1", "gene_name": "OXA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKD3-1", "protein_name": "Mitochondrial inner membrane protein OXA1-like", "gene_name": "OXA1L", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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complementation of an oxa1- yeast mutation identifies an Arabidopsis thaliana cDNA involved in the assembly of respiratory complexes.", "journal": "The Plant journal : for cell and molecular biology", "date": "1997-12", "authors": "Hamel P, Sakamoto W, Wintz H, Dujardin G", "reference": { "type": "PubMed", "id": "9450344", "url": "https://pubmed.ncbi.nlm.nih.gov/9450344" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42191-1", "protein_name": "Mitochondrial inner membrane protein OXA1", "gene_name": "OXA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42191", "url": "https://www.uniprot.org/uniprotkb/Q42191" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9450344", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Plant Microbe Interact.", "date": "2001", "authors": "Vercauteren I, Van Der Schueren E, Van Montagu M, Gheysen G", "reference": { "type": "PubMed", "id": "11277426", "url": "https://pubmed.ncbi.nlm.nih.gov/11277426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42328-1", "protein_name": "Defensin-like protein 195", "gene_name": "ATTI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HW17-1", "protein_name": "Transmembrane 9 superfamily member 5", "gene_name": "TMN5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23715-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PAG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23237-1", "protein_name": "Peroxidase 49", "gene_name": "PER49", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94A94-1", "protein_name": "Diaminopimelate decarboxylase 2, chloroplastic", "gene_name": "LYSA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22633-1", "protein_name": "Protein NOI4", "gene_name": "NOI4; NOI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LD38-1", "protein_name": "Mitochondrial pyruvate carrier 3", "gene_name": "MPC3; NRGA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42328", "url": "https://www.uniprot.org/uniprotkb/Q42328" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11277426", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor.", "journal": "Biochemistry", "date": "2002", "authors": "Zhao Qin, Chae Young Kee, Markley John L", "reference": { "type": "PubMed", "id": "12369816", "url": "https://pubmed.ncbi.nlm.nih.gov/12369816" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42328-1", "protein_name": "Defensin-like protein 195", "gene_name": "ATTI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42328", "url": "https://www.uniprot.org/uniprotkb/Q42328" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12369816", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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genes.", "journal": "Genetics", "date": "2004", "authors": "Clauss M J, Mitchell-Olds T", "reference": { "type": "PubMed", "id": "15082560", "url": "https://pubmed.ncbi.nlm.nih.gov/15082560" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42328-1", "protein_name": "Defensin-like protein 195", "gene_name": "ATTI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42330-1", "protein_name": "Defensin-like protein 192", "gene_name": "ATTI7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RYE7-1", "protein_name": "Defensin-like protein 196", "gene_name": "ATTI4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22866-1", "protein_name": "Defensin-like protein 193", "gene_name": "ATTI2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22867-1", "protein_name": "Defensin-like protein 194", "gene_name": "ATTI3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22869-1", "protein_name": 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Behav.", "date": "2014", "authors": "Schmidt Stefanie, Dethloff Frederik, Beine-Golovchuk Olga, Kopka Joachim", "reference": { "type": "PubMed", "id": "24603461", "url": "https://pubmed.ncbi.nlm.nih.gov/24603461" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42347-1", "protein_name": "Large ribosomal subunit protein eL24z", "gene_name": "RPL24A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22165-1", "protein_name": "Probable ribosome biogenesis protein RLP24", "gene_name": "RPL24C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C911-1", "protein_name": "DNAJ protein JJJ1 homolog", "gene_name": "JJJ1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZQ18-1", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2", "gene_name": "REIL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38666-1", "protein_name": "Large ribosomal subunit protein eL24y", "gene_name": "RPL24B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96327-1", "protein_name": "ERBB-3 BINDING PROTEIN 1", "gene_name": "EBP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1G5-1", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "gene_name": "REIL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42347", "url": "https://www.uniprot.org/uniprotkb/Q42347" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24603461", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"gene_name": "PME1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42534", "url": "https://www.uniprot.org/uniprotkb/Q42534" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8666246", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The serine acetyltransferase gene family in Arabidopsis thaliana and the regulation of its expression by cadmium.", "journal": "Plant Mol. Biol.", "date": "2003", "authors": "Howarth Jonathan R, Dom\u00ednguez-Sol\u00eds Jos\u00e9 R, Guti\u00e9rrez-Alcal\u00e1 Gloria, Wray John L, Romero Luis C, Gotor Cecilia", "reference": { "type": "PubMed", "id": "12650624", "url": "https://pubmed.ncbi.nlm.nih.gov/12650624" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42538-1", "protein_name": "Serine acetyltransferase 5", "gene_name": "SAT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S895-1", "protein_name": "Serine acetyltransferase 2", "gene_name": "SAT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42588-1", "protein_name": "Serine acetyltransferase 1, chloroplastic", "gene_name": "SAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39218-1", "protein_name": "Serine acetyltransferase 3, mitochondrial", "gene_name": "SAT3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42538", "url": "https://www.uniprot.org/uniprotkb/Q42538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12650624", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and expression analysis of a serine acetyltransferase gene family involved in a key step of the sulfur assimilation pathway in Arabidopsis.", "journal": "Plant Physiol.", "date": "2005", "authors": "Kawashima Cintia Goulart, Berkowitz Oliver, Hell Ruediger, Noji Masaaki, Saito Kazuki", "reference": { "type": "PubMed", "id": "15579666", "url": "https://pubmed.ncbi.nlm.nih.gov/15579666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42538-1", "protein_name": "Serine acetyltransferase 5", "gene_name": "SAT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S895-1", "protein_name": "Serine acetyltransferase 2", "gene_name": "SAT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W2B8-1", "protein_name": "Serine acetyltransferase 4", "gene_name": "SAT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42588-1", "protein_name": "Serine acetyltransferase 1, chloroplastic", "gene_name": "SAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39218-1", "protein_name": "Serine acetyltransferase 3, mitochondrial", "gene_name": "SAT3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42538", "url": "https://www.uniprot.org/uniprotkb/Q42538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15579666", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Biophys. Acta", "date": "1997", "authors": "Howarth J R, Roberts M A, Wray J L", "reference": { "type": "PubMed", "id": "9048879", "url": "https://pubmed.ncbi.nlm.nih.gov/9048879" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42538-1", "protein_name": "Serine acetyltransferase 5", "gene_name": "SAT5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42538", "url": "https://www.uniprot.org/uniprotkb/Q42538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9048879", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isoform-dependent differences in feedback regulation and subcellular localization of serine acetyltransferase involved in cysteine biosynthesis from Arabidopsis thaliana.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Noji M, Inoue K, Kimura N, Gouda A, Saito K", "reference": { "type": "PubMed", "id": "9830017", "url": "https://pubmed.ncbi.nlm.nih.gov/9830017" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42538-1", "protein_name": "Serine acetyltransferase 5", "gene_name": "SAT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42588-1", "protein_name": "Serine acetyltransferase 1, chloroplastic", "gene_name": "SAT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39218-1", "protein_name": "Serine acetyltransferase 3, mitochondrial", "gene_name": "SAT3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42538", "url": "https://www.uniprot.org/uniprotkb/Q42538" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lipid transfer proteins are encoded by a small multigene family in Arabidopsis thaliana.", "journal": "Plant Sci.", "date": "2000", "authors": "Arondel12 , Vergnolle2 , Cantrel , Kader", "reference": { "type": "PubMed", "id": "10940464", "url": "https://pubmed.ncbi.nlm.nih.gov/10940464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42589-1", "protein_name": "Non-specific lipid-transfer protein 1", "gene_name": "LTP1", "tax_name": "Mouse-ear cress" }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plant pathogenesis-related (PR) proteins: a focus on PR peptides.", "journal": "Plant Physiol. Biochem.", "date": "2008", "authors": "Sels Jan, Mathys Janick, De Coninck Barbara M A, Cammue Bruno P A, De Bolle Miguel F C", "reference": { "type": "PubMed", "id": "18674922", "url": "https://pubmed.ncbi.nlm.nih.gov/18674922" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42589-1", "protein_name": "Non-specific lipid-transfer protein 1", "gene_name": "LTP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDB4-1", "protein_name": "Non-specific lipid-transfer protein 6", "gene_name": "LTP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZV9-1", "protein_name": "Non-specific lipid-transfer protein 10", "gene_name": "LTP10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0T1-1", "protein_name": "Non-specific lipid-transfer protein 15", "gene_name": "LTP15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCZ0-1", "protein_name": "Non-specific lipid-transfer protein 12", "gene_name": "LTP12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XFS7-1", "protein_name": "Non-specific lipid-transfer protein 5", "gene_name": "LTP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MQA2-1", "protein_name": "Non-specific lipid-transfer protein 13", "gene_name": "LTP13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2V3C1-1", "protein_name": "Non-specific lipid-transfer protein 11", "gene_name": "LTP11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7I3-1", "protein_name": "Non-specific lipid-transfer protein 2", "gene_name": "LTP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6AWW0-1", "protein_name": "Non-specific lipid-transfer protein 9", "gene_name": "LTP9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIT2-1", "protein_name": "Putative non-specific lipid-transfer protein 14", "gene_name": "LTP14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LLR6-1", "protein_name": "Non-specific lipid-transfer protein 4", "gene_name": "LTP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LLR7-1", "protein_name": "Non-specific lipid-transfer protein 3", "gene_name": "LTP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZPW9-1", "protein_name": "Non-specific lipid-transfer protein 8", "gene_name": "LTP8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUK6-1", "protein_name": "Non-specific lipid-transfer protein 7", "gene_name": "LTP7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42589", "url": "https://www.uniprot.org/uniprotkb/Q42589" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18674922", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"referenced_proteins": [ { "uniprot_canonical_ac": "Q42589-1", "protein_name": "Non-specific lipid-transfer protein 1", "gene_name": "LTP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42589", "url": "https://www.uniprot.org/uniprotkb/Q42589" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8029357", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Adenosine-5'-triphosphate-sulfurylase from Arabidopsis thaliana and Escherichia coli are functionally equivalent but structurally and kinetically divergent: nucleotide sequence of two adenosine-5'-triphosphate-sulfurylase cDNAs from Arabidopsis thaliana and analysis of a recombinant enzyme.", "journal": "Arch. Biochem. Biophys.", "date": "1995", "authors": "Murillo M, Leustek T", "reference": { "type": "PubMed", "id": "7487067", "url": "https://pubmed.ncbi.nlm.nih.gov/7487067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q43870-1", "protein_name": "ATP sulfurylase 2", "gene_name": "APS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23324-1", "protein_name": "ATP-sulfurylase 3, chloroplastic", "gene_name": "APS3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43870", "url": "https://www.uniprot.org/uniprotkb/Q43870" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7487067", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Expression studies in yeast and in relation to plant sulfur nutrition.", "journal": "J. Biol. Chem.", "date": "1996", "authors": "Logan H M, Cathala N, Grignon C, Davidian J C", "reference": { "type": "PubMed", "id": "8647819", "url": "https://pubmed.ncbi.nlm.nih.gov/8647819" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q43870-1", "protein_name": "ATP sulfurylase 2", "gene_name": "APS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43870", "url": "https://www.uniprot.org/uniprotkb/Q43870" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8647819", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effect of ATP sulfurylase overexpression in bright yellow 2 tobacco cells. Regulation Of atp sulfurylase and SO4(2-) transport activities.", "journal": "Plant Physiol.", "date": "1998", "authors": "Hatzfeld Y, Cathala N, Grignon C, Davidian J C", "reference": { "type": "PubMed", "id": "9536047", "url": "https://pubmed.ncbi.nlm.nih.gov/9536047" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q43870-1", "protein_name": "ATP sulfurylase 2", "gene_name": "APS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q43870", "url": "https://www.uniprot.org/uniprotkb/Q43870" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9536047", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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Arabidopsis and rice.", "journal": "J. Exp. Bot.", "date": "2006", "authors": "Li Jigang, Li Xiaojuan, Guo Lei, Lu Feng, Feng Xiaojie, He Kun, Wei Liping, Chen Zhangliang, Qu Li-Jia, Gu Hongya", "reference": { "type": "PubMed", "id": "16531467", "url": "https://pubmed.ncbi.nlm.nih.gov/16531467" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4JL84-1", "protein_name": "Transcription factor MYB59", "gene_name": "MYB59", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX82-1", "protein_name": "Transcription factor MYB48", "gene_name": "MYB48", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4JL84", "url": "https://www.uniprot.org/uniprotkb/Q4JL84" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16531467", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolutionary analysis of three gibberellin oxidase genes in rice, Arabidopsis, and soybean.", "journal": "Gene", "date": "2011", "authors": "Han Fengming, Zhu Baoge", "reference": { "type": "PubMed", "id": "21056641", "url": "https://pubmed.ncbi.nlm.nih.gov/21056641" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4PT02-1", "protein_name": "Gibberellin 20 oxidase 5", "gene_name": "GA20OX5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49561-1", "protein_name": "Gibberellin 2-beta-dioxygenase 8", "gene_name": "GA2OX8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64692-1", "protein_name": "Gibberellin 2-beta-dioxygenase 3", "gene_name": "GA2OX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEA2-1", "protein_name": "Gibberellin 2-beta-dioxygenase 1", "gene_name": 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"Genetics", "date": "2004-08", "authors": "Lalanne Eric, Michaelidis Christos, Moore James M, Gagliano Wendy, Johnson Andrew, Patel Ramesh, Howden Ross, Vielle-Calzada Jean-Phillippe, Grossniklaus Ueli, Twell David", "reference": { "type": "PubMed", "id": "15342534", "url": "https://pubmed.ncbi.nlm.nih.gov/15342534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4V3C1-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "gene_name": "MED8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4V3C1", "url": "https://www.uniprot.org/uniprotkb/Q4V3C1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15342534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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Exp. Bot.", "date": "2003", "authors": "Laval Val\u00e9rie, Masclaux Fr\u00e9d\u00e9ric, Serin Arnaud, Carri\u00e8re Marguerite, Roldan Caroline, Devic Martine, Pont-Lezica Rafael F, Galaud Jean-Philippe", "reference": { "type": "PubMed", "id": "12493849", "url": "https://pubmed.ncbi.nlm.nih.gov/12493849" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q56ZQ3-1", "protein_name": "Vacuolar-sorting receptor 4", "gene_name": "VSR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22925-1", "protein_name": "Vacuolar-sorting receptor 2", "gene_name": "VSR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64758-1", "protein_name": "Vacuolar-sorting receptor 5", "gene_name": "VSR5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80977-1", "protein_name": "Vacuolar-sorting receptor 3", "gene_name": "VSR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7E3-1", "protein_name": "Vacuolar-sorting receptor 7", "gene_name": "VSR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FYH7-1", "protein_name": "Vacuolar-sorting receptor 6", "gene_name": "VSR6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93026-1", "protein_name": "Vacuolar-sorting receptor 1", "gene_name": "VSR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZQ3", "url": "https://www.uniprot.org/uniprotkb/Q56ZQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12493849", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Shimada Tomoo, Fuji Kentaro, Tamura Kentaro, Kondo Maki, Nishimura Mikio, Hara-Nishimura Ikuko", "reference": { "type": "PubMed", "id": "14657332", "url": "https://pubmed.ncbi.nlm.nih.gov/14657332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q56ZQ3-1", "protein_name": "Vacuolar-sorting receptor 4", "gene_name": "VSR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22925-1", "protein_name": "Vacuolar-sorting receptor 2", "gene_name": "VSR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64758-1", "protein_name": "Vacuolar-sorting receptor 5", "gene_name": "VSR5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80977-1", "protein_name": "Vacuolar-sorting receptor 3", "gene_name": "VSR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7E3-1", "protein_name": "Vacuolar-sorting receptor 7", "gene_name": "VSR7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FYH7-1", "protein_name": "Vacuolar-sorting receptor 6", "gene_name": "VSR6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93026-1", "protein_name": "Vacuolar-sorting receptor 1", "gene_name": "VSR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56ZQ3", "url": "https://www.uniprot.org/uniprotkb/Q56ZQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14657332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]