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Cell. Endocrinol.", "date": "2006", "authors": "Whitlock K E, Illing N, Brideau N J, Smith K M, Twomey S", "reference": { "type": "PubMed", "id": "16777316", "url": "https://pubmed.ncbi.nlm.nih.gov/16777316" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDR3-1", "protein_name": "Anosmin-1b isoform X1", "gene_name": "anos1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBX0-1", "protein_name": "3.4.21.4; Anosmin-1a", "gene_name": "anos1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16777316", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization of anosmin-1a and anosmin-1b in the inner ear and neuromasts of zebrafish.", "journal": "Gene Expr. Patterns", "date": "2007", "authors": "Ernest Sylvain, Guadagnini St\u00e9phanie, Pr\u00e9vost Marie-Christine, Soussi-Yanicostas Nadia", "reference": { "type": "PubMed", "id": "17064968", "url": "https://pubmed.ncbi.nlm.nih.gov/17064968" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDR3-1", "protein_name": "Anosmin-1b isoform X1", "gene_name": "anos1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBX0-1", "protein_name": "3.4.21.4; Anosmin-1a", "gene_name": "anos1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17064968", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Essential requirement for zebrafish anosmin-1a in the migration of the posterior lateral line primordium.", "journal": "Dev. Biol.", "date": "2008", "authors": "Yanicostas Constantin, Ernest Sylvain, Dayraud Cyrielle, Petit Christine, Soussi-Yanicostas Nadia", "reference": { "type": "PubMed", "id": "18585376", "url": "https://pubmed.ncbi.nlm.nih.gov/18585376" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDR3-1", "protein_name": "Anosmin-1b isoform X1", "gene_name": "anos1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBX0-1", "protein_name": "3.4.21.4; Anosmin-1a", "gene_name": "anos1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18585376", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization and characterization of kal 1.a and kal 1.b in the brain of adult zebrafish (Danio rerio).", "journal": "Brain Res. Bull.", "date": "2012", "authors": "Ayari Besma, Landoulsi Ahmed, Soussi-Yanicostas Nadia", "reference": { "type": "PubMed", "id": "22472058", "url": "https://pubmed.ncbi.nlm.nih.gov/22472058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDR3-1", "protein_name": "Anosmin-1b isoform X1", "gene_name": "anos1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22472058", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Point mutations in KAL1 and the mitochondrial gene MT-tRNA(cys) synergize to produce Kallmann syndrome phenotype.", "journal": "Sci. Rep.", "date": "2015", "authors": "Wang Fei, Huang Guo-Dong, Tian Hui, Zhong Ying-Bin, Shi Hui-Juan, Li Zheng, Zhang Xian-Sheng, Wang Han, Sun Fei", "reference": { "type": "PubMed", "id": "26278626", "url": "https://pubmed.ncbi.nlm.nih.gov/26278626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDR3-1", "protein_name": "Anosmin-1b isoform X1", "gene_name": "anos1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FDV9-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "cars1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBX0-1", "protein_name": "3.4.21.4; Anosmin-1a", "gene_name": "anos1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26278626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Anosmin1 Shuttles Fgf to Facilitate Its Diffusion, Increase Its Local Concentration, and Induce Sensory Organs.", "journal": "Dev. Cell", "date": "2018", "authors": "Wang John, Yin Yandong, Lau Stephanie, Sankaran Jagadish, Rothenberg Eli, Wohland Thorsten, Meier-Schellersheim Martin, Knaut Holger", "reference": { "type": "PubMed", "id": "30122631", "url": "https://pubmed.ncbi.nlm.nih.gov/30122631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDR3-1", "protein_name": "Anosmin-1b isoform X1", "gene_name": "anos1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBX0-1", "protein_name": "3.4.21.4; Anosmin-1a", "gene_name": "anos1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30122631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes.", "journal": "J. Immunol.", "date": "2014", "authors": "Briolat Val\u00e9rie, Jouneau Luc, Carvalho Ralph, Palha Nuno, Langevin Christelle, Herbomel Philippe, Schwartz Olivier, Spaink Herman P, Levraud Jean-Pierre, Boudinot Pierre", "reference": { "type": "PubMed", "id": "24683187", "url": "https://pubmed.ncbi.nlm.nih.gov/24683187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDY2-1", "protein_name": "GTP-binding protein 1", "gene_name": "gtpbp1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58IRC7-1", "protein_name": "SP110 nuclear antigen, tandem duplicate 4 isoform X1", "gene_name": "sp100.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58IU49-1", "protein_name": "Major histocompatibility complex class I LFA isoform X1", "gene_name": "mhc1lfa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QHF8-1", "protein_name": "Glucose-6-phosphatase", "gene_name": "g6pc1a.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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"tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYQ0-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38a.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P4B9-1", "protein_name": "Interferon-induced protein 44f5 isoform X1", "gene_name": "ifi44f5; si:ch211-197g15.9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WUV1-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.5", "gene_name": "ms4a17a.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8WIQ4-1", "protein_name": "Granzyme 3, tandem duplicate 3 precursor", "gene_name": "gzm3.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8WIQ5-1", "protein_name": "Granzyme 3, tandem duplicate 4", "gene_name": "gzm3.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S5H8-1", "protein_name": "Uncharacterized protein LOC561916", "gene_name": "si:ch211-229n2.6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6B5-1", "protein_name": "Interferon induced protein 44c2", "gene_name": "ifi44c2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FCM5-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 11", "gene_name": "ifit11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A486-1", "protein_name": "Interferon alpha inducible protein 27.8", "gene_name": "ifi27.8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A489-1", "protein_name": "Interferon alpha inducible protein 27.6", "gene_name": "ifi27.6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JII7-1", "protein_name": "Ras association domain-containing protein 4a", "gene_name": "rassf4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QC14-1", "protein_name": "Uncharacterized protein LOC563797 isoform 1", "gene_name": "si:dkey-26c10.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZUP1-1", "protein_name": "Terminal nucleotidyltransferase 5C", "gene_name": "tent5c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P874-1", "protein_name": "protein-serine/threonine phosphatase", "gene_name": "ppm1kb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QHI8-1", "protein_name": "Platelet-derived growth factor receptor-like protein", "gene_name": "pdgfrl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B826-1", "protein_name": "Polypeptide N-acetylgalactosaminyltransferase", "gene_name": "galnt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FDW8-1", "protein_name": "Tudor domain-containing protein 7B", "gene_name": "tdrd7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QIC4-1", "protein_name": "Phosphatase and actin regulator 4A", "gene_name": "phactr4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6R5-1", "protein_name": "Plasma protease C1 inhibitor isoform X1", "gene_name": "serping1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8Q4-1", "protein_name": "Interferon-induced 35 kDa protein", "gene_name": "ifi35", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FB10-1", "protein_name": "Serine/threonine-protein kinase", "gene_name": "pim3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YV88-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "fbxo44.9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z868-1", "protein_name": "Phospholipid scramblase", "gene_name": "si:ch211-71m22.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IBK5-1", "protein_name": "E3 ubiquitin-protein ligase rnf213-alpha", "gene_name": "rnf213a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q502K2-1", "protein_name": "Deoxynucleoside triphosphate triphosphohydrolase SAMHD1", "gene_name": "samhd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DBX4-1", "protein_name": "Serine/threonine-protein kinase greatwall", "gene_name": "mastl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1MT80-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "gbp4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7A8-1", "protein_name": "E3 ISG15--protein ligase HERC5.2 isoform X1", "gene_name": "herc56.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WEF3-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.3", "gene_name": "ms4a17a.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5PNN0-1", "protein_name": "Uncharacterized protein LOC100034401", "gene_name": "si:dkey-204f11.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RHE5-1", "protein_name": "Leucine-rich alpha-2-glycoprotein precursor", "gene_name": "si:dkey-90m5.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ15-1", "protein_name": "Proline-rich nuclear receptor coactivator 1", "gene_name": "pnrc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P2T7-1", "protein_name": "UPF0462 protein C4orf33 homolog", "gene_name": "zgc:77739", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WE70-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.10", "gene_name": "ms4a17a.10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5I1-1", "protein_name": "Major histocompatibility complex class I LAA", "gene_name": "mhc1laa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N857-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 8", "gene_name": "ifit8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7S8-1", "protein_name": "T cell activation RhoGTPase activating protein b isoform 1", "gene_name": "tagapb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AA64-1", "protein_name": "Multivesicular body subunit 12Ba isoform 1", "gene_name": "mvb12ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDY7-1", "protein_name": "Transmembrane protein 51b", "gene_name": "tmem51b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3K7-1", "protein_name": "Complement C4-B", "gene_name": "c4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7N8-1", "protein_name": "Bromodomain adjacent to zinc finger domain protein 1A", "gene_name": "baz1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A891-1", "protein_name": "Uncharacterized protein LOC571377 isoform 1; Uncharacterized protein isoform X1", "gene_name": "ifi44f4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8X4-1", "protein_name": "EH domain-containing protein 4", "gene_name": "ehd4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A953-1", "protein_name": "Lysosome membrane protein 2c", "gene_name": "scarb2c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A994-1", "protein_name": "Uncharacterized protein LOC326081", "gene_name": "ifi44a6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8X0-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "rnf213b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8C7-1", "protein_name": "T cell activation RhoGTPase activating protein a", "gene_name": "tagapa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QTD0-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.7", "gene_name": "ms4a17a.7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QWG9-1", "protein_name": "XIAP-associated factor 1", "gene_name": "xaf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RE72-1", "protein_name": "Normal mucosa of esophagus-specific gene 1 protein", "gene_name": "coxfal3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1MZN0-1", "protein_name": "Galectin", "gene_name": "lgals9l3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5Y9-1", "protein_name": "serine C-palmitoyltransferase", "gene_name": "sptlc2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAT7-1", "protein_name": "Opioid growth factor receptor 2", "gene_name": "ogfr2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NFI3-1", "protein_name": "Mohawk homeobox b", "gene_name": "mkxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T986-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38.6; ccl38a.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J4P0-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.8 isoform X1", "gene_name": "ms4a17a.8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J5W5-1", "protein_name": "glycerol kinase", "gene_name": "zgc:172295", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J6J8-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.9 isoform X1", "gene_name": "ms4a17a.9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JCA0-1", "protein_name": "Caspase b, like isoform X1", "gene_name": "caspbl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S5H7-1", "protein_name": "Uncharacterized protein LOC100002243", "gene_name": "si:ch211-229n2.7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S5P9-1", "protein_name": "Fibronectin type III domain containing 3Ba", "gene_name": "fndc3ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S682-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "irf5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UY56-1", "protein_name": "Tumor necrosis factor-inducible gene 6 protein", "gene_name": "tnfaip6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A492-1", "protein_name": "Interferon alpha inducible protein 27.4", "gene_name": "ifi27.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JM41-1", "protein_name": "Golgin-45", "gene_name": "blzf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EYZ3-1", "protein_name": "Opioid growth factor receptor", "gene_name": "ogfr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F4C0-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "usp36", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F5V1-1", "protein_name": "Pro-adrenomedullin", "gene_name": "adma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUY0-1", "protein_name": "2.4.2.30; Protein mono-ADP-ribosyltransferase PARP12", "gene_name": "parp12a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUZ9-1", "protein_name": "Carboxylic ester hydrolase", "gene_name": "ces3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVS2-1", "protein_name": "PX domain-containing protein kinase-like protein", "gene_name": "pxk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q56A36-1", "protein_name": "Hematopoietic SH2 domain-containing protein homolog", "gene_name": "hsh2d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVS6-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP12b", "gene_name": "parp12b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGR7-1", "protein_name": "Prosaposin receptor GPR37b precursor", "gene_name": "gpr37b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG91-1", "protein_name": "Thioredoxin-interacting protein", "gene_name": "txnipb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HM56-1", "protein_name": "Galectin", "gene_name": "lgals3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC42-1", "protein_name": "Uncharacterized protein LOC794045; Uncharacterized protein isoform X1", "gene_name": "si:dkey-211g8.6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NIX6-1", "protein_name": "Multivesicular body subunit 12Bb", "gene_name": "mvb12bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NV59-1", "protein_name": "Nuclear factor, interleukin 3 regulated, member 5", "gene_name": "nfil3-5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8J0-1", "protein_name": "3.5.4.37; Double-stranded RNA-specific adenosine deaminase", "gene_name": "adar", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P914-1", "protein_name": "Uncharacterized protein LOC553517", "gene_name": "si:ch73-252i11.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAI6-1", "protein_name": "GTP-binding protein 2b", "gene_name": "gtpbp2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1Q134-1", "protein_name": "Pentraxin family member", "gene_name": "apcs", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BG37-1", "protein_name": "Vesicle-associated membrane protein 5 isoform 1", "gene_name": "vamp5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BHJ6-1", "protein_name": "Chemokine (C-X-C motif) ligand 11, duplicate 8 precursor", "gene_name": "cxcl11.8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FBV5-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "dtx3la", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q4U5-1", "protein_name": "5'-3' exoribonuclease 1", "gene_name": "xrn1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8W5-1", "protein_name": "Plasmalemma vesicle associated protein b", "gene_name": "plvapb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q9R5-1", "protein_name": "1.16.1.9; Metalloreductase STEAP4", "gene_name": "steap4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QEL5-1", "protein_name": "Cholesterol transporter ABCA5", "gene_name": "abca5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QSL6-1", "protein_name": "F-box only protein 44", "gene_name": "fbxo44.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QWW1-1", "protein_name": "Pseudouridylate synthase 1 homolog", "gene_name": "pus1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAH2-1", "protein_name": "Major histocompatibility complex class I LGA precursor", "gene_name": "mhc1lga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAH3-1", "protein_name": "Major histocompatibility complex class I LDA precursor", "gene_name": "mhc1lda", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NVZ1-1", "protein_name": "Interferon alpha inducible protein 27.2", "gene_name": "ifi27.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6ZM83-1", "protein_name": "PiggyBac transposable element-derived protein 5", "gene_name": "pgbd5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T292-1", "protein_name": "Mitoferrin-2", "gene_name": "slc25a28", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32U070-1", "protein_name": "Myoferlin isoform X1", "gene_name": "myof", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E5W8-1", "protein_name": "Transmembrane protein 51a", "gene_name": "tmem51a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R223-1", "protein_name": "Uncharacterized protein LOC795887", "gene_name": "ifi44d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DHR3-1", "protein_name": "Ras-GEF domain-containing family member 1B-A", "gene_name": "rasgef1ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAJ9-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BA52-1", "protein_name": "Pentraxin family member", "gene_name": "crp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWY1-1", "protein_name": "Proteasome subunit beta", "gene_name": "psmb13a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBB3-1", "protein_name": "GTP-binding protein 1", "gene_name": "gtpbp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B905-1", "protein_name": "Rho guanine nucleotide exchange factor 3", "gene_name": "arhgef3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WVT4-1", "protein_name": "Phospholipid scramblase", "gene_name": "si:ch211-71m22.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4S7-1", "protein_name": "E3 ISG15--protein ligase HERC5.4", "gene_name": "herc56.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILH0-1", "protein_name": "Synapse differentiation-inducing gene protein 1-like", "gene_name": "si:dkey-33i11.9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NED8-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17A.4", "gene_name": "ms4a17a.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUT8-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 12", "gene_name": "ifit12", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P3U6-1", "protein_name": "Interferon alpha inducible protein 27.3", "gene_name": "ifi27.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P5X8-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 15", "gene_name": "ifit15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8I9-1", "protein_name": "Membrane-spanning 4-domains, subfamily A, member 17C.1", "gene_name": "ms4a17c.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P963-1", "protein_name": "Zinc finger protein 618", "gene_name": "znf618", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B3Y9-1", "protein_name": "Interferon alpha inducible protein 27.7 isoform X1", "gene_name": "ifi27.7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A476-1", "protein_name": "Galectin", "gene_name": "lgals3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GCR6-1", "protein_name": "trypsin", "gene_name": "gzm3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GG73-1", "protein_name": "Angiopoietin-related protein 1b isoform X1", "gene_name": "angptl1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GMF7-1", "protein_name": "Interferon regulatory factor", "gene_name": "irf2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H021-1", "protein_name": "Uncharacterized protein isoform X2", "gene_name": "gbp3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDY2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDY2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24683187", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 146 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of target genes downstream of semaphorin6A/PlexinA2 signaling in zebrafish.", "journal": "Dev. Dyn.", "date": "2017", "authors": "Emerson Sarah E, St Clair Riley M, Waldron Ashley L, Bruno Sierra R, Duong Anna, Driscoll Heather E, Ballif Bryan A, McFarlane Sarah, Ebert Alicia M", "reference": { "type": "PubMed", "id": "28440030", "url": "https://pubmed.ncbi.nlm.nih.gov/28440030" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDY2-1", "protein_name": "GTP-binding protein 1", "gene_name": "gtpbp1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FAP1-1", "protein_name": "E3 ubiquitin-protein ligase RNF169", "gene_name": "rnf169", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q514-1", "protein_name": "Exonuclease V", "gene_name": "exo5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4X6-1", "protein_name": "Nebulette", "gene_name": "nebl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UY56-1", "protein_name": "Tumor necrosis factor-inducible gene 6 protein", "gene_name": "tnfaip6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N598-1", "protein_name": "Antizyme inhibitor 1a", "gene_name": "azin1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7L4-1", "protein_name": "E3 ubiquitin-protein ligase LNX isoform X1", "gene_name": "lnx1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BKS4-1", "protein_name": "C-X-C chemokine receptor type 3.3 isoform X1", "gene_name": "cxcr3.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GEY2-1", "protein_name": "Translesion synthesis protein REV1", "gene_name": "rev1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDY2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDY2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28440030", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets.", "journal": "PLoS Genet.", "date": "2020", "authors": "Gangras Pooja, Gallagher Thomas L, Parthun Michael A, Yi Zhongxia, Patton Robert D, Tietz Kiel T, Deans Natalie C, Bundschuh Ralf, Amacher Sharon L, Singh 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], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32502192", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Novel Vascular Genes Downstream of Islet2 and Nr2f1b Transcription Factors.", "journal": "Biomedicines", "date": "2022", "authors": "Li Ru-Fang, Wang Yi-Shan, Lu Fu-I, Huang Yi-Shan, Chiu Chien-Chih, Tai Ming-Hong, Wu Chang-Yi", "reference": { "type": "PubMed", "id": "35740282", "url": "https://pubmed.ncbi.nlm.nih.gov/35740282" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDY2-1", "protein_name": "GTP-binding protein 1", "gene_name": "gtpbp1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7L4-1", "protein_name": "E3 ubiquitin-protein ligase LNX isoform X1", "gene_name": "lnx1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDY2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDY2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35740282", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GTP-Binding Protein 1-Like (GTPBP1l) Regulates Vascular Patterning during Zebrafish Development.", "journal": "Biomedicines", "date": "2022", "authors": "Lo Yi-Hao, Huang Yi-Shan, Chang Yu-Chiuan, Hung Pei-Yu, Wang Wen-Der, Liu Wangta, Urade Ritesh, Wen Zhi-Hong, Wu Chang-Yi", "reference": { "type": "PubMed", "id": "36551964", 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"uniprot_canonical_ac": "A0A8M1N906-1", "protein_name": "Tumor necrosis factor receptor superfamily member 21 precursor", "gene_name": "tnfrsf21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S7K8-1", "protein_name": "Coilin", "gene_name": "coil", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5BJJ6-1", "protein_name": "Methionine adenosyltransferase 2 subunit beta", "gene_name": "mat2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NE58-1", "protein_name": "RNA-binding protein 5", "gene_name": "rbm5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUG4-1", "protein_name": "Myomesin 1a (Skelemin)", "gene_name": "myom1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QDT4-1", "protein_name": "2.7.4.3; Transcription initiation factor TFIID subunit 9", "gene_name": "taf9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QZ64-1", "protein_name": "ATP-binding cassette sub-family F member 2", "gene_name": "abcf2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R543-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "pom121", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R7L1-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 9", "gene_name": "psmd9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4J3-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 2", "gene_name": "eif4g2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NB85-1", "protein_name": "2.7.10.1; Non-receptor tyrosine-protein kinase TNK1", "gene_name": "tnk1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GAP5-1", "protein_name": "Pericentriolar material 1 protein isoform X1", "gene_name": "pcm1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDC6", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDC6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11116086", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hepatic gene expression profiling using Genechips in zebrafish exposed to 17alpha-ethynylestradiol.", "journal": "Aquat. Toxicol.", "date": "2006", "authors": "Hoffmann J L, Torontali S P, Thomason R G, Lee D M, Brill J L, Price B B, Carr G J, Versteeg D J", "reference": { "type": "PubMed", "id": "16872691", "url": "https://pubmed.ncbi.nlm.nih.gov/16872691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDC6-1", "protein_name": "Prohibitin", "gene_name": "phb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A6D9-1", "protein_name": "Cyclin-dependent kinase inhibitor 3", "gene_name": "cdkn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S5J5-1", "protein_name": "Alpha-tocopherol transfer protein", "gene_name": "ttpa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8S9-1", "protein_name": "Iodothyronine deiodinase", "gene_name": "dio1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZZ04-1", "protein_name": "Enoyl-CoA hydratase, mitochondrial", "gene_name": "echs1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDC6", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDC6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16872691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Olfactory imprinting is correlated with changes in gene expression in the olfactory epithelia of the zebrafish.", "journal": "J. Neurobiol.", "date": "2006", "authors": "Harden Maegan V, Newton Lucy A, Lloyd Russell C, Whitlock Kathleen E", "reference": { "type": "PubMed", "id": "17013923", "url": "https://pubmed.ncbi.nlm.nih.gov/17013923" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDC6-1", "protein_name": "Prohibitin", "gene_name": "phb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4KMC8-1", "protein_name": "Fructose-bisphosphate aldolase C-A", "gene_name": "aldoca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G6J7-1", "protein_name": "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial", "gene_name": "nfu1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2CG95-1", "protein_name": "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial", "gene_name": "acadm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6F0-1", "protein_name": "Protein lin-7 homolog", "gene_name": "lin7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V3D2-1", "protein_name": "Transcription factor HES-5", "gene_name": "her4.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ50-1", "protein_name": "Urotensin 1 precursor", "gene_name": "uts1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEK7-1", "protein_name": "cAMP responsive element binding protein 3-like 3 like", "gene_name": "creb3l3l", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDC6", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDC6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17013923", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of the zebrafish proteome during embryonic development.", "journal": "Mol. Cell. Proteomics", "date": "2008", "authors": "Lucitt Margaret B, Price Thomas S, Pizarro Angel, Wu Weichen, Yocum Anastasia K, Seiler Christoph, Pack Michael A, Blair Ian A, Fitzgerald Garret A, Grosser Tilo", "reference": { "type": "PubMed", "id": "18212345", "url": "https://pubmed.ncbi.nlm.nih.gov/18212345" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDC6-1", "protein_name": "Prohibitin", "gene_name": "phb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MTA1-1", "protein_name": "DNA repair nuclease APEX1", "gene_name": "apex1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5I8-1", "protein_name": "Crystallin, beta A1, like 1", "gene_name": "cryba1l1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDC6", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDC6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18212345", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin.", "journal": "Sci. Rep.", "date": "2016", "authors": "Gistelinck C, Gioia R, Gagliardi A, Tonelli F, Marchese L, Bianchi L, Landi C, Bini L, Huysseune A, Witten P E, Staes A, Gevaert K, De Rocker N, Menten B, Malfait F, Leikin S, Carra S, Tenni R, Rossi A, De Paepe A, Coucke P, Willaert A, Forlino A", "reference": { "type": "PubMed", "id": "26876635", "url": "https://pubmed.ncbi.nlm.nih.gov/26876635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDC6-1", "protein_name": "Prohibitin", "gene_name": "phb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0P4F7-1", "protein_name": "Medium-chain acyl-CoA ligase ACSF2, mitochondrial", "gene_name": "acsf2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KQK2-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "asns", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TBI4-1", "protein_name": "C-Jun-amino-terminal kinase-interacting protein 4", "gene_name": "spag9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AQZ8-1", "protein_name": "Xylosyltransferase 2", "gene_name": "xylt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZL0-1", "protein_name": "Serine/threonine-protein kinase LMTK2", "gene_name": "lmtk2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1F5-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "gngt2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XIY4-1", "protein_name": "Succinate dehydrogenase assembly factor 3, mitochondrial", "gene_name": "sdhaf3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A4FVJ7-1", "protein_name": "RNA-binding protein 48", "gene_name": "rbm48", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFZ8-1", "protein_name": "Paraoxonase", "gene_name": "pon3.1; 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Biol.", "date": "2022", "authors": "De Meulemeester Ann-Sofie, Heylen Lise, Siekierska Aleksandra, Mills James D, Romagnolo Alessia, Van Der Wel Nicole N, Aronica Eleonora, de Witte Peter A M", "reference": { "type": "PubMed", "id": "36238691", "url": "https://pubmed.ncbi.nlm.nih.gov/36238691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IDC6-1", "protein_name": "Prohibitin", "gene_name": "phb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PW15-1", "protein_name": "Tuberin", "gene_name": "tsc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HSD8-1", "protein_name": "Reelin", "gene_name": "reln", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IDC6", "url": "https://www.uniprot.org/uniprotkb/A0AC58IDC6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36238691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expressed sequence tag analysis of zebrafish eye tissues for NEIBank.", "journal": "Mol. Vis.", "date": "2005", "authors": "Vihtelic Thomas S, Fadool James M, Gao James, Thornton Kimberley A, Hyde David R, Wistow Graeme", "reference": { "type": "PubMed", "id": "16379021", "url": "https://pubmed.ncbi.nlm.nih.gov/16379021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IF14-1", "protein_name": "Lens intrinsic membrane protein 2.2 isoform X1", "gene_name": "lim2.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W512-1", "protein_name": "Phosducin", "gene_name": "pdca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1G6-1", "protein_name": "Beta-2-microglobulin", "gene_name": "b2ml", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q800E7-1", "protein_name": "Phosphodiesterase", "gene_name": "pde6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PID1-1", "protein_name": "Rod outer segment membrane protein 1b", "gene_name": "rom1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FEW4-1", 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Med.", "date": "2017", "authors": "Tang Qin, Iyer Sowmya, Lobbardi Riadh, Moore John C, Chen Huidong, Lareau Caleb, Hebert Christine, Shaw McKenzie L, Neftel Cyril, Suva Mario L, Ceol Craig J, Bernards Andre, Aryee Martin, Pinello Luca, Drummond Iain A, Langenau David M", "reference": { "type": "PubMed", "id": "28878000", "url": "https://pubmed.ncbi.nlm.nih.gov/28878000" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJR1-1", "protein_name": "Eyes absent homolog", "gene_name": "eya4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3ATV7-1", "protein_name": "Sulfate transporter", "gene_name": "slc26a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T784-1", "protein_name": "Protein CBFA2T1 isoform X1", "gene_name": "runx1t1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JFF1-1", "protein_name": "Intelectin-1 isoform X1", "gene_name": "itln1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NW16-1", "protein_name": "Chemokine (C-C motif) ligand 33, duplicate 3 precursor", "gene_name": "ccl33.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8N4-1", "protein_name": "B-cell antigen receptor complex-associated protein alpha chain precursor", "gene_name": "cd79a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GCP6-1", "protein_name": "Zinc finger E-box-binding homeobox 2a isoform X2", "gene_name": "zeb2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GUH5-1", "protein_name": "Tetraspanin", "gene_name": "cd37", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJR1", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJR1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28878000", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fli1+ cells transcriptional analysis reveals an Lmo2-Prdm16 axis in angiogenesis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2021", "authors": "Matrone Gianfranco, Xia Bo, Chen Kaifu, Denvir Martin A, Baker Andrew H, Cooke John P", "reference": { "type": "PubMed", "id": "34330825", "url": "https://pubmed.ncbi.nlm.nih.gov/34330825" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJR1-1", "protein_name": "Eyes absent homolog", "gene_name": "eya4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8J8-1", "protein_name": "PR domain zinc finger protein 5", "gene_name": "prdm5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GEI4-1", "protein_name": "DNA-binding protein SATB", "gene_name": "satb2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJR1", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJR1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34330825", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interferon regulatory factor-7 is required for hair cell development during zebrafish embryogenesis.", "journal": "Dev. 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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Biol.", "date": "2023", "authors": "Hipke Katrin, Pitter Bettina, Hruscha Alexander, van Bebber Frauke, Modic Miha, Bansal Vikas, Lewandowski Sebastian A, Orozco Denise, Edbauer Dieter, Bonn Stefan, Haass Christian, Pohl Ulrich, Montanez Eloi, Schmid Bettina", "reference": { "type": "PubMed", "id": "37384248", "url": "https://pubmed.ncbi.nlm.nih.gov/37384248" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJ45-1", "protein_name": "TAR DNA-binding protein 43", "gene_name": "tardbpa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJ45", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJ45" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37384248", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mis-localization of endogenous TDP-43 leads to ALS-like early-stage metabolic dysfunction and progressive motor deficits.", "journal": "Mol. Neurodegener.", "date": "2024", "authors": "Hu Yiying, Hruscha Alexander, Pan Chenchen, Schifferer Martina, Schmidt Michael K, Nuscher Brigitte, Giera Martin, Kostidis Sarantos, Burhan \u00d6zge, van Bebber Frauke, Edbauer Dieter, Arzberger Thomas, Haass Christian, Schmid Bettina", "reference": { "type": "PubMed", "id": "38902734", "url": "https://pubmed.ncbi.nlm.nih.gov/38902734" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJ45-1", "protein_name": "TAR DNA-binding protein 43", "gene_name": "tardbpa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJ45", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJ45" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38902734", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative genomics provides evidence for close evolutionary relationships between the urotensin II and somatostatin gene families.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2006", "authors": "Tostivint Herv\u00e9, Joly Lucille, Lihrmann Isabelle, Parmentier Caroline, Lebon Alexis, Morisson Mireille, Calas Andr\u00e9, Ekker Marc, Vaudry Hubert", "reference": { "type": "PubMed", "id": "16467151", "url": "https://pubmed.ncbi.nlm.nih.gov/16467151" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJA1-1", "protein_name": "Urotensin 2, alpha isoform X1", "gene_name": "uts2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJA1", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJA1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16467151", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Occurrence of two distinct urotensin II-related peptides in zebrafish provides new insight into the evolutionary history of the urotensin II gene family.", "journal": "Endocrinology", "date": "2011", "authors": "Parmentier Caroline, Hameury Emilie, Dubessy Christophe, Quan Feng B, Habert Damien, Calas Andr\u00e9, Vaudry Hubert, Lihrmann Isabelle, Tostivint Herv\u00e9", "reference": { "type": "PubMed", "id": "21447629", "url": "https://pubmed.ncbi.nlm.nih.gov/21447629" }, "referenced_glycans": [], 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in motoneurons in zebrafish, but is dispensable for locomotion in larva.", "journal": "Peptides", "date": "2021", "authors": "Quan Feng B, Gaillard Anne-Laure, Alejevski Faredin, P\u00e9zeron Guillaume, Tostivint Herv\u00e9", "reference": { "type": "PubMed", "id": "34655691", "url": "https://pubmed.ncbi.nlm.nih.gov/34655691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJA1-1", "protein_name": "Urotensin 2, alpha isoform X1", "gene_name": "uts2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJA1", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJA1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34655691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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neuroinflammation underlie scoliosis upon cilia dysfunction.", "journal": "Elife", "date": "2024", "authors": "Djebar Morgane, Anselme Isabelle, Pezeron Guillaume, Bardet Pierre-Luc, Cantaut-Belarif Yasmine, Eschstruth Alexis, L\u00f3pez-Santos Diego, Le Ribeuz H\u00e9l\u00e8ne, Jenett Arnim, Khoury Hanane, Veziers Joelle, Parmentier Caroline, Hirschler Aur\u00e9lie, Carapito Christine, Bachmann-Gagescu Ruxandra, Schneider-Maunoury Sylvie, Vesque Christine", "reference": { "type": "PubMed", "id": "39388365", "url": "https://pubmed.ncbi.nlm.nih.gov/39388365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IJA1-1", "protein_name": "Urotensin 2, alpha isoform X1", "gene_name": "uts2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZV84-1", "protein_name": "Dynein axonemal assembly factor 1", "gene_name": "dnaaf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TJB3-1", "protein_name": "Protein fantom isoform X1", "gene_name": "rpgrip1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AZL6-1", "protein_name": "Centrosomal protein of 290 kDa isoform X1", "gene_name": "cep290", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H5G1-1", "protein_name": "Urotensin-related peptide 1 isoform X1", "gene_name": "urp1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IJA1", "url": "https://www.uniprot.org/uniprotkb/A0AC58IJA1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39388365", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Dyn.", "date": "2000", "authors": "Stickney H L, Barresi M J, Devoto S H", "reference": { "type": "PubMed", "id": "11066087", "url": "https://pubmed.ncbi.nlm.nih.gov/11066087" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58III5-1", "protein_name": "Transcription factor HES-5", "gene_name": "her4.2; her4.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T019-1", "protein_name": "Cilium assembly protein DZIP1", "gene_name": "dzip1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RCH4-1", "protein_name": "Neurogenic locus notch homolog protein 2 precursor", "gene_name": "notch2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58III5", "url": "https://www.uniprot.org/uniprotkb/A0AC58III5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11066087", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries.", "journal": "Development", "date": "2002", "authors": "Henry Clarissa A, Urban Michael K, Dill Kariena K, Merlie John P, Page Michelle F, Kimmel Charles B, Amacher Sharon L", "reference": { "type": "PubMed", "id": "12117818", "url": "https://pubmed.ncbi.nlm.nih.gov/12117818" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58III5-1", "protein_name": "Transcription factor HES-5", "gene_name": "her4.2; 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Biol.", "date": "2005", "authors": "Sumanas Saulius, Zhang Bo, Dai Rujuan, Lin Shuo", "reference": { "type": "PubMed", "id": "15890328", "url": "https://pubmed.ncbi.nlm.nih.gov/15890328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58III5-1", "protein_name": "Transcription factor HES-5", "gene_name": "her4.2; her4.5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58III5", "url": "https://www.uniprot.org/uniprotkb/A0AC58III5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15890328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative analysis of her genes during fish somitogenesis suggests a mouse/chick-like mode of oscillation in medaka.", "journal": "Dev. 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Cell Biol.", "date": "2020", "authors": "Wang Mei, Du Lei, Lee Aih Cheun, Li Yan, Qin Huiwen, He Jie", "reference": { "type": "PubMed", "id": "32699896", "url": "https://pubmed.ncbi.nlm.nih.gov/32699896" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58III5-1", "protein_name": "Transcription factor HES-5", "gene_name": "her4.2; her4.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AT79-1", "protein_name": "POU domain protein", "gene_name": "pou2f2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58III5", "url": "https://www.uniprot.org/uniprotkb/A0AC58III5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32699896", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Single-cell transcriptome analysis of the zebrafish embryonic trunk.", "journal": "PLoS ONE", "date": "2021", "authors": "Metikala Sanjeeva, Casie Chetty Satish, Sumanas Saulius", "reference": { "type": "PubMed", "id": "34234366", "url": "https://pubmed.ncbi.nlm.nih.gov/34234366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58III5-1", "protein_name": "Transcription factor HES-5", "gene_name": "her4.2; 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her4.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IB00-1", "protein_name": "Matrix metalloproteinase-17b isoform 1 precursor", "gene_name": "mmp17b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R3S7-1", "protein_name": "Neuromedin-U isoform X1", "gene_name": "nmu", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58III5", "url": "https://www.uniprot.org/uniprotkb/A0AC58III5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37426341", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A gain-of-function screen in zebrafish identifies a guanylate cyclase with a role in neuronal degeneration.", "journal": "Mol. Genet. Genomics", "date": "2009", "authors": "Maddison Lisette A, Lu Jianjun, Victoroff Tristan, Scott Ethan, Baier Herwig, Chen Wenbiao", "reference": { "type": "PubMed", "id": "19221799", "url": "https://pubmed.ncbi.nlm.nih.gov/19221799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIF9-1", "protein_name": "Uncharacterized protein LOC100307112; Uncharacterized protein isoform X1", "gene_name": "si:dkeyp-73a2.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMF9-1", "protein_name": "Ubiquitin-like protein NEDD8", "gene_name": "nedd8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FB68-1", "protein_name": "DNA polymerase", "gene_name": "pola1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUU3-1", "protein_name": "TAP binding protein (Tapasin), tandem duplicate 1 precursor", "gene_name": "tapbp.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFT5-1", "protein_name": "High mobility group nucleosome binding domain 6", "gene_name": "hmgn6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3IT91-1", "protein_name": "Paired box protein Pax-6", "gene_name": "pax10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILK3-1", "protein_name": "Rho GTPase-activating protein 11A isoform 1", "gene_name": "arhgap11a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIF9", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIF9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19221799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Parvalbumin isoforms in zebrafish.", "journal": "Mol. Biol. Rep.", "date": "2005", "authors": "Friedberg Felix", "reference": { "type": "PubMed", "id": "16172917", "url": "https://pubmed.ncbi.nlm.nih.gov/16172917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16172917", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes.", "journal": "J. Proteome Res.", "date": "2014", "authors": "Nolte Hendrik, Konzer Anne, Ruhs Aaron, Jungblut Benno, Braun Thomas, Kr\u00fcger Marcus", "reference": { "type": "PubMed", "id": "24611545", "url": "https://pubmed.ncbi.nlm.nih.gov/24611545" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4H6-1", "protein_name": "Phosphoglycerate mutase", "gene_name": "pgam1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IFJ4-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKF0-1", "protein_name": "Apolipoprotein A-Ib precursor", "gene_name": "apoa1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7I7-1", "protein_name": "ATP-dependent 6-phosphofructokinase", "gene_name": "pfkmb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JCE3-1", "protein_name": "Calponin", "gene_name": "cnn1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZ94-1", "protein_name": "glutathione transferase", "gene_name": "gstt1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QCX2-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "grhprb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8AW56-1", "protein_name": "Cochlin", "gene_name": "coch", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IQQ7-1", "protein_name": "Lumican", "gene_name": "lum", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4T5-1", "protein_name": "Myosin-binding protein C, fast-type", "gene_name": "mybpc2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H0W7-1", "protein_name": "Alpha-1,4 glucan phosphorylase", "gene_name": "pygl", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24611545", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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tool for clonal analysis of gene function.", "journal": "Genome Res.", "date": "2016", "authors": "Di Donato Vincenzo, De Santis Flavia, Auer Thomas O, Testa No\u00e9, S\u00e1nchez-Iranzo H\u00e9ctor, Mercader Nadia, Concordet Jean-Paul, Del Bene Filippo", "reference": { "type": "PubMed", "id": "26957310", "url": "https://pubmed.ncbi.nlm.nih.gov/26957310" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IWI7-1", "protein_name": "Kinesin family member 5Aa", "gene_name": "kif5aa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26957310", "abstract": "", 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"https://pubmed.ncbi.nlm.nih.gov/31591961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31591961", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Genet. Metab.", "date": "2021", "authors": "Takashima Shigeo, Takemoto Shoko, Toyoshi Kayoko, Ohba Akiko, Shimozawa Nobuyuki", "reference": { "type": "PubMed", "id": "34016526", "url": "https://pubmed.ncbi.nlm.nih.gov/34016526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJC0-1", "protein_name": "Cysteine and glycine-rich protein 1", "gene_name": "csrp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F4V8-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "pex2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QCX4-1", "protein_name": "Telethonin", "gene_name": "tcap", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAK0-1", "protein_name": "Long-chain-fatty-acid--CoA ligase", "gene_name": "acsl5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UZM3-1", "protein_name": "Cardiac myosin light chain-1", "gene_name": "cmlc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JJK4-1", "protein_name": "Elongation of very long chain fatty acids protein", "gene_name": "elovl8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32THC7-1", "protein_name": "Troponin I type 2a (Skeletal, fast), tandem duplicate 2", "gene_name": "tnni2a.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TIL7-1", "protein_name": "Troponin I4a isoform X1", "gene_name": "tnni4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6N1-1", "protein_name": "Crystallin, gamma M2d21", "gene_name": "crygm2d21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6P0-1", "protein_name": "Crystallin, gamma M2d9", "gene_name": "crygm2d9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NJ75-1", "protein_name": "Long-chain-fatty-acid--CoA ligase ACSBG2", "gene_name": "acsbg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TXZ5-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "acsl3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0G2L0Q2-1", "protein_name": "Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase", "gene_name": "hacd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1MZY8-1", "protein_name": "Crystallin, gamma M2d6", "gene_name": "crygm2d6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N008-1", "protein_name": "Crystallin, gamma M2d18", "gene_name": "crygm2d18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0R2-1", "protein_name": "Crystallin, gamma M2d15", "gene_name": "crygm2d15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5I8-1", "protein_name": "Crystallin, beta A1, like 1", "gene_name": "cryba1l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9H1-1", "protein_name": "Crystallin, gamma M2d2", "gene_name": "crygm2d2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PC16-1", "protein_name": "Elongation of very long chain fatty acids protein 7", "gene_name": "elovl7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PN39-1", "protein_name": "Zeta-crystallin", "gene_name": "cryz", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6M3-1", "protein_name": "Crystallin, gamma M2d1", "gene_name": "crygm2d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F6F8-1", "protein_name": "Uncharacterized protein si:ch73-95l15.5", "gene_name": "ppt2a.2; si:ch73-95l15.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVA8-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "acsl3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGV8-1", "protein_name": "Malonyl-CoA-acyl carrier protein transacylase, mitochondrial", "gene_name": "mcat", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QE97-1", "protein_name": "Crystallin, gamma S1 isoform 1", "gene_name": "crygs1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCC0-1", "protein_name": "Troponin I type 2b (Skeletal, fast), tandem duplicate 1 isoform 1; Troponin I type 2b (Skeletal, fast), tandem duplicate 1 isoform 2", "gene_name": "tnni2b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RD68-1", "protein_name": "palmitoyl-CoA hydrolase", "gene_name": "ppt2a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DHL8-1", "protein_name": "Troponin I, skeletal, slow d", "gene_name": "tnni1d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P0H7-1", "protein_name": "Carbonyl reductase family member 4", "gene_name": "cbr4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B880-1", "protein_name": "Proheparin-binding EGF-like growth factor", "gene_name": "hbegfb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZZ04-1", "protein_name": "Enoyl-CoA hydratase, mitochondrial", "gene_name": "echs1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PG07-1", "protein_name": "Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase", "gene_name": "hacd2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34016526", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 33 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional study reveals a potential leptin-dependent gene regulatory network in zebrafish brain.", "journal": "Fish Physiol. Biochem.", "date": "2021", "authors": "Ahi Ehsan Pashay, Tsakoumis Emmanouil, Brunel Mathilde, Schmitz Monika", "reference": { "type": "PubMed", "id": "34236575", "url": "https://pubmed.ncbi.nlm.nih.gov/34236575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B7V4-1", "protein_name": "Forkhead box protein P1a isoform X1", "gene_name": "foxp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QW97-1", "protein_name": "Transcription factor Sp1", "gene_name": "sp1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34236575", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CSF-contacting neurons respond to Streptococcus pneumoniae and promote host survival during central nervous system infection.", "journal": "Curr. Biol.", "date": "2023", "authors": "Prendergast Andrew E, Jim Kin Ki, Marnas Hugo, Desban Laura, Quan Feng B, Djenoune Lydia, Laghi Valerio, Hocquemiller Agn\u00e8s, Lunsford Elias T, Roussel Julian, Keiser Ludovic, Lejeune Francois-Xavier, Dhanasekar Mahalakshmi, Bardet Pierre-Luc, Levraud Jean-Pierre, van de Beek Diederik, Vandenbroucke-Grauls Christina M J E, Wyart Claire", "reference": { "type": "PubMed", "id": "36791723", "url": "https://pubmed.ncbi.nlm.nih.gov/36791723" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G7W5-1", "protein_name": "Espin isoform X1", "gene_name": "espn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RSJ1-1", "protein_name": "Atrial natriuretic peptide receptor 3 isoform X1", "gene_name": "npr3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PMZ3-1", "protein_name": "Macrophage-capping protein", "gene_name": "scinlb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6P6V4-1", "protein_name": "Taste receptor type 2", "gene_name": "tas2r3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8E7F8-1", "protein_name": "C-type natriuretic peptide precursor", "gene_name": "nppc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1RMB5-1", "protein_name": "Protein shisa-like-1a", "gene_name": "shisal1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FG48-1", "protein_name": "Tubulin polymerization-promoting protein family member 3", "gene_name": "tppp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E7N5-1", "protein_name": "Voltage-dependent calcium channel subunit alpha-2/delta-2a precursor", "gene_name": "cacna2d2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BAV5-1", "protein_name": "BAR/IMD domain-containing adapter protein 2", "gene_name": "baiap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AA96-1", "protein_name": "Secretogranin-2a precursor", "gene_name": "scg2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36791723", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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Natl. Acad. Sci.", "date": "2024", "authors": "Duan Weicheng, Huang Guiyang, Sui Yang, Wang Kang, Yu Yuxin, Chu Xufeng, Cao Xu, Chen Liangpei, Liu Jiahui, Eichler Evan E, Xiong Bo", "reference": { "type": "PubMed", "id": "39471229", "url": "https://pubmed.ncbi.nlm.nih.gov/39471229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IIH2-1", "protein_name": "Parvalbumin", "gene_name": "pvalb6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QFI7-1", "protein_name": "RNA helicase", "gene_name": "ddx3xa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P467-1", "protein_name": "Agouti-related protein", "gene_name": "agrp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RCH4-1", "protein_name": "Neurogenic locus notch homolog protein 2 precursor", "gene_name": "notch2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5W8I8-1", "protein_name": "Vesicular glutamate transporter 2.1", "gene_name": "slc17a6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8N2-1", "protein_name": "Somatostatin 1, tandem duplicate 1 precursor", "gene_name": "sst1.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A962-1", "protein_name": "histone acetyltransferase", "gene_name": "crebbpb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IIH2", "url": "https://www.uniprot.org/uniprotkb/A0AC58IIH2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39471229", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"uniprot_canonical_ac": "A0A0R4IIB7-1", "protein_name": "Succinate-semialdehyde dehydrogenase", "gene_name": "aldh5a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WUM0-1", "protein_name": "5'-AMP-activated protein kinase catalytic subunit alpha-1", "gene_name": "prkaa1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IMV8", "url": "https://www.uniprot.org/uniprotkb/A0AC58IMV8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18803863", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the six zebrafish clade B fibrillar procollagen genes, with evidence for evolutionarily conserved alternative splicing within the pro-alpha1(V) C-propeptide.", "journal": "Matrix Biol.", "date": "2010", "authors": "Hoffman Guy G, Branam Amanda M, Huang Guorui, Pelegri Francisco, Cole William G, Wenstrup Richard M, Greenspan Daniel S", "reference": { "type": "PubMed", "id": "20102740", "url": "https://pubmed.ncbi.nlm.nih.gov/20102740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IMV8-1", "protein_name": "6-phosphogluconolactonase", "gene_name": "pgls", 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"phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spermidine, but not spermine, is essential for pigment pattern formation in zebrafish.", "journal": "Biol. Open", "date": "2016", "authors": "Frohnh\u00f6fer Hans Georg, Geiger-Rudolph Silke, Pattky Martin, Meixner Martin, Huhn Carolin, Maischein Hans-Martin, Geisler Robert, Gehring Ines, Maderspacher Florian, N\u00fcsslein-Volhard Christiane, Irion Uwe", "reference": { "type": "PubMed", "id": "27215328", "url": "https://pubmed.ncbi.nlm.nih.gov/27215328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IK63-1", "protein_name": "Transmembrane protein 107", "gene_name": "tmem107l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F0X6-1", "protein_name": "Structural maintenance of chromosomes protein", "gene_name": "smc1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B960-1", "protein_name": "E3 ubiquitin-protein ligase HUWE1", "gene_name": "huwe1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R3G8-1", "protein_name": "Spermidine synthase", "gene_name": "srm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R3H7-1", "protein_name": "RIB43A-like with coiled-coils protein 1", "gene_name": "ribc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NGF4-1", "protein_name": "3.4.21.104; Mannan-binding lectin serine protease 2 precursor", "gene_name": "masp2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IK63", "url": "https://www.uniprot.org/uniprotkb/A0AC58IK63" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27215328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide analysis of facial skeletal regionalization in zebrafish.", "journal": "Development", "date": "2017", "authors": "Askary Amjad, Xu Pengfei, Barske Lindsey, Bay Maxwell, Bump Paul, Balczerski Bartosz, Bonaguidi Michael A, Crump J Gage", "reference": { "type": "PubMed", "id": "28705894", "url": "https://pubmed.ncbi.nlm.nih.gov/28705894" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IK63-1", "protein_name": "Transmembrane protein 107", "gene_name": "tmem107l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKQ6-1", "protein_name": "CD248 molecule, endosialin a precursor", "gene_name": "cd248a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R238-1", "protein_name": "Secreted frizzled-related protein 2", "gene_name": "sfrp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R8L1-1", "protein_name": "Fibroblast growth factor binding protein 2a precursor", "gene_name": "fgfbp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BFC1-1", "protein_name": "Short stature homeobox protein isoform X1", "gene_name": "shox", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IK63", "url": "https://www.uniprot.org/uniprotkb/A0AC58IK63" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28705894", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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Natl. Acad. Sci. 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Res.", "date": "2021", "authors": "Spreafico Marco, Cafora Marco, Bragato Cinzia, Capitanio Daniele, Marasca Federica, Bodega Beatrice, De Palma Clara, Mora Marina, Gelfi Cecilia, Marozzi Anna, Pistocchi Anna", "reference": { "type": "PubMed", "id": "34214631", "url": "https://pubmed.ncbi.nlm.nih.gov/34214631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IKH0-1", "protein_name": "Paired box protein Pax-7b isoform X1", "gene_name": "pax7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q9S0-1", "protein_name": "Paired box protein Pax-3b", "gene_name": "pax3b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IKH0", "url": "https://www.uniprot.org/uniprotkb/A0AC58IKH0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34214631", "abstract": "", "glycosylation": [], 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Understanding the complexity of epimorphic regeneration in zebrafish caudal fin tissue: A transcriptomic and proteomic approach.", "journal": "Genomics", "date": "2022", "authors": "Banu Sarena, Gaur Namami, Nair Sowmya, Ravikrishnan Tanuja, Khan Shahida, Mani Sandhya, Bharathi Swarna, Mandal Komal, Kuram Naga Anusha, Vuppaladadium Sowmya, Ravi Rowmika, Murthy Ch Lakshmi N, Quoseena Mir, Babu Nukala Sarath, Idris Mohammed M", "reference": { "type": "PubMed", "id": "35134499", "url": "https://pubmed.ncbi.nlm.nih.gov/35134499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IKH0-1", "protein_name": "Paired box protein Pax-7b isoform X1", "gene_name": "pax7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58IYE6-1", "protein_name": "C-type lectin domain family 19 member A isoform X1", "gene_name": "clec19a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LX72-1", "protein_name": "Synemin", "gene_name": "synm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B5C4-1", "protein_name": "Amino acid transporter", "gene_name": "slc1a4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QDP8-1", "protein_name": "Interleukin-7 receptor subunit alpha isoform X1; Interleukin-7 receptor subunit alpha precursor", "gene_name": "il7r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R3J9-1", "protein_name": "type I protein arginine methyltransferase", "gene_name": "prmt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NWG4-1", "protein_name": "Protein arginine N-methyltransferase 6", "gene_name": "prmt6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A518-1", "protein_name": "Tubulin alpha chain", "gene_name": "tuba1c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IE17-1", "protein_name": "LIF receptor subunit alpha a precursor", "gene_name": "lifra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IRA8-1", "protein_name": "Uncharacterized protein LOC563286", "gene_name": "mhc2d8.35b2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TKT2-1", "protein_name": "Interleukin-17C precursor", "gene_name": "il17c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TKT4-1", "protein_name": "Interleukin 17a/f1 precursor", "gene_name": "f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V234-1", "protein_name": "Four and a half LIM domains protein 2b", "gene_name": "fhl2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P515-1", "protein_name": "Sodium-dependent phosphate transport protein 2B", "gene_name": "slc34a2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B728-1", "protein_name": "Hyaluronan synthase 1 isoform X1", "gene_name": "has1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YZH0-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "slc38a4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NS11-1", "protein_name": "Solute carrier family 23 member 1", "gene_name": "slc23a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AA58-1", "protein_name": "Uncharacterized protein LOC724011", "gene_name": "eeig2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N819-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "slc7a7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TWM0-1", "protein_name": "Relaxin receptor 2a isoform X1", "gene_name": "rxfp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAD9-1", "protein_name": "Interleukin-4 receptor subunit alpha isoform 2 precursor", "gene_name": "il4r.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1ECZ9-1", "protein_name": "Arginine/serine-rich protein 1", "gene_name": "rsrp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1JQ66-1", "protein_name": "Solute carrier family 35 member E3", "gene_name": "slc35e3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1L8I5-1", "protein_name": "Uncharacterized protein LOC541499", "gene_name": "kcnj1a.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWC6-1", "protein_name": "dihydrofolate reductase", "gene_name": "zgc:153031", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LXJ9-1", "protein_name": "Keratin, type 1, 19e", "gene_name": "krt1-19e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RHJ3-1", "protein_name": "Disheveled-associated activator of morphogenesis 1b", "gene_name": "daam1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QDD1-1", "protein_name": "Protein arginine N-methyltransferase 2", "gene_name": "prmt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RD19-1", "protein_name": "Rho-related BTB domain-containing protein 1", "gene_name": "rhobtb4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QP75-1", "protein_name": "Origin recognition complex subunit 3", "gene_name": "orc3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1F1-1", "protein_name": "Collagen alpha-3(IX) chain precursor", "gene_name": "col9a3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RBF1-1", "protein_name": "Interleukin-20 receptor subunit alpha precursor", "gene_name": "il20ra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KNX5-1", "protein_name": "Class A basic helix-loop-helix protein 9", "gene_name": "bhlha9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TW75-1", "protein_name": "Interleukin-20 receptor subunit beta isoform X1", "gene_name": "crfb16", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9YHZ5-1", "protein_name": "Serine/threonine-protein kinase pim-2", "gene_name": "pim2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BKU4-1", "protein_name": "DEP domain-containing mTOR-interacting protein isoform X1", "gene_name": "deptor", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P182-1", "protein_name": "Uncharacterized protein LOC568958 precursor", "gene_name": "fc46h12", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UYQ0-1", "protein_name": "Interleukin-13 receptor subunit alpha-2 precursor", "gene_name": "il13ra2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IKH0", "url": "https://www.uniprot.org/uniprotkb/A0AC58IKH0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35134499", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The fifth class of Galpha proteins.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2009", "authors": "Oka Yuichiro, Saraiva Luis R, Kwan Yen Yen, Korsching Sigrun I", "reference": { "type": "PubMed", "id": "19164534", "url": "https://pubmed.ncbi.nlm.nih.gov/19164534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQ19-1", "protein_name": "Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 2 isoform X1", "gene_name": "gnal2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLJ7-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gnaq", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LW07-1", "protein_name": "Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4", "gene_name": "gna15.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BHS4-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna15.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQ19", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQ19" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19164534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Shared and unique G alpha proteins in the zebrafish versus mammalian senses of taste and smell.", "journal": "Chem. Senses", "date": "2011", "authors": "Oka Yuichiro, Korsching Sigrun I", "reference": { "type": "PubMed", "id": "21242316", "url": "https://pubmed.ncbi.nlm.nih.gov/21242316" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQ19-1", "protein_name": "Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 2 isoform X1", "gene_name": "gnal2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLJ7-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gnaq", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LW07-1", "protein_name": "Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4", "gene_name": "gna15.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BHS4-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna15.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQ19", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQ19" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21242316", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct functions of two olfactory marker protein genes derived from teleost-specific whole genome duplication.", "journal": "BMC Evol. Biol.", "date": "2015", "authors": "Suzuki Hikoyu, Nikaido Masato, Hagino-Yamagishi Kimiko, Okada Norihiro", "reference": { "type": "PubMed", "id": "26555542", "url": "https://pubmed.ncbi.nlm.nih.gov/26555542" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQ19-1", "protein_name": "Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 2 isoform X1", "gene_name": "gnal2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IP11-1", "protein_name": "Olfactory receptor class A-like protein 4", "gene_name": "ora4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5H1X0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "ora2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQ19", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQ19" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26555542", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Molecular Targets for 4,5-Dichloro-2-n-octyl-4-isothiazolin-3-one (DCOIT) in Teleosts: New Insight into Mechanism of Toxicity.", "journal": "Environ. Sci. Technol.", "date": "2017", "authors": "Chen Lianguo, Au Doris W T, Hu Chenyan, Peterson Drew R, Zhou Bingsheng, Qian Pei-Yuan", "reference": { "type": "PubMed", "id": "28026967", "url": "https://pubmed.ncbi.nlm.nih.gov/28026967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQ19-1", "protein_name": "Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 2 isoform X1", "gene_name": "gnal2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N7Z8-1", "protein_name": "Tubulin beta chain", "gene_name": "tubb2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQ19", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQ19" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28026967", "abstract": "", "glycosylation": [], "mutagenesis": 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Zilong, Peng Jinrong", "reference": { "type": "PubMed", "id": "12618376", "url": "https://pubmed.ncbi.nlm.nih.gov/12618376" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IPC1-1", "protein_name": "Rho GTPase-activating protein 21a isoform X1", "gene_name": "arhgap21a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R9X0-1", "protein_name": "Solute carrier family 7, member 3", "gene_name": "slc7a3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "M9MM98-1", "protein_name": "DNA-binding protein SMUBP-2", "gene_name": "ighmbp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T9U9-1", "protein_name": "Serine/Arginine-related protein 53", "gene_name": "rsrc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TJ25-1", "protein_name": "Zinc finger CCCH domain-containing protein 13 isoform X1", "gene_name": "zc3h13", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KGZ3-1", "protein_name": "Gypsy 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"tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RQB0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9Z2-1", "protein_name": "Uncharacterized protein LOC565061; Uncharacterized protein isoform X1", "gene_name": "si:ch211-216l23.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IPC1", "url": "https://www.uniprot.org/uniprotkb/A0AC58IPC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12618376", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bioinformatic identification of genes encoding C1q-domain-containing proteins in zebrafish.", "journal": "J. Genet. Genomics", "date": "2008", "authors": "Mei Jie, Gui Jianfang", "reference": { "type": "PubMed", "id": "18222405", "url": "https://pubmed.ncbi.nlm.nih.gov/18222405" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQR3-1", "protein_name": "Adiponectin isoform X1", "gene_name": "adipoqa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QNI1-1", "protein_name": "Complement component 1, q subcomponent-like 4 like precursor", "gene_name": "cbln5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BHA7-1", "protein_name": "Complement C1q tumor necrosis factor-related protein 4", "gene_name": "c1qtnf13", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH35-1", "protein_name": "Acyl-CoA thioesterase 18", "gene_name": "acot16; acot18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N299-1", "protein_name": "Complement C1q subcomponent subunit C precursor", "gene_name": "c1qc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N540-1", "protein_name": "Complement C1q tumor necrosis factor-related protein 4", "gene_name": "c1qtnf4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UYU6-1", "protein_name": "Cerebellin 13 precursor", "gene_name": "cbln13", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAF3-1", "protein_name": "Cerebellin-1 precursor", "gene_name": "cbln1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N8S6-1", "protein_name": "Cerebellin 10 precursor", "gene_name": "cbln10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FAJ7-1", "protein_name": "Otolin 1b", "gene_name": "otol1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TZJ7-1", "protein_name": "Cerebellin 9 isoform X1", "gene_name": "cbln9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0A0MPI6-1", "protein_name": "Uncharacterized protein LOC570444 precursor", "gene_name": "c1ql1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NTG9-1", "protein_name": "Multimerin-2a precursor", "gene_name": "mmrn2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18222405", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Adiponectin and adiponectin receptor genes are coexpressed during zebrafish embryogenesis and regulated by food deprivation.", "journal": "Dev. Dyn.", "date": "2008", "authors": "Nishio Shin-Ichi, Gibert Yann, Bernard Laure, Brunet Fr\u00e9d\u00e9ric, Triqueneaux G\u00e9rard, Laudet Vincent", "reference": { "type": "PubMed", "id": "18489000", "url": "https://pubmed.ncbi.nlm.nih.gov/18489000" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQR3-1", "protein_name": "Adiponectin isoform X1", "gene_name": "adipoqa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9Q713-1", "protein_name": "[histone H3]-trimethyl-L-lysine(4) demethylase", "gene_name": "kdm5ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJJ9-1", "protein_name": "Adiponectin receptor protein 1a", "gene_name": "adipor1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18489000", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Increase of hepatic fat accumulation by liver specific expression of Hepatitis B virus X protein in zebrafish.", "journal": "Biochim. Biophys. Acta", "date": "2010", "authors": "Shieh Yun-Sheng, Chang Yin-Shan, Hong Jiann-Ruey, Chen Li-Je, Jou Luen-Kuang, Hsu Chia-Chun, Her Guor Mour", "reference": { "type": "PubMed", "id": "20416398", "url": "https://pubmed.ncbi.nlm.nih.gov/20416398" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQR3-1", "protein_name": "Adiponectin isoform X1", "gene_name": "adipoqa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FB64-1", "protein_name": "aromatase", "gene_name": "cyp4t8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9G1-1", "protein_name": "carnitine O-palmitoyltransferase", "gene_name": "cpt1aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PGE7-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "acox3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PN43-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase delta", "gene_name": "agpat4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AC58IQR3", "url": "https://www.uniprot.org/uniprotkb/A0AC58IQR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20416398", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overexpression of Akt1 enhances adipogenesis and leads to lipoma formation in zebrafish.", "journal": "PLoS ONE", "date": "2012", "authors": "Chu Che-Yu, Chen Chi-Fang, Rajendran R Samuel, Shen Chia-Ning, Chen Te-Hao, Yen Chueh-Chuan, Chuang Chih-Kuang, Lin Dar-Shong, Hsiao Chung-Der", "reference": { "type": "PubMed", "id": "22623957", "url": "https://pubmed.ncbi.nlm.nih.gov/22623957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AC58IQR3-1", "protein_name": "Adiponectin isoform X1", "gene_name": "adipoqa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJJ9-1", "protein_name": "Adiponectin receptor protein 1a", "gene_name": "adipor1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TVW1-1", "protein_name": "Leptin receptor isoform X1", "gene_name": "lepr", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { 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