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proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe.", "journal": "Mol. 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Biol.", "date": "1993", "authors": "MacInnes M A, Dickson J A, Hernandez R R, Learmonth D, Lin G Y, Mudgett J S, Park M S, Schauer S, Reynolds R J, Strniste G F", "reference": { "type": "PubMed", "id": "8413238", "url": "https://pubmed.ncbi.nlm.nih.gov/8413238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P28715", "url": "https://www.uniprot.org/uniprotkb/P28715" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8413238", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biochem.", "date": "1998", "authors": "Ferrari D M, Nguyen Van P, Kratzin H D, S\u00f6ling H D", "reference": { "type": "PubMed", "id": "9738895", "url": "https://pubmed.ncbi.nlm.nih.gov/9738895" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30040-1", "protein_name": "Endoplasmic reticulum resident protein 29", "gene_name": "ERP29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P81623-1", "protein_name": "Endoplasmic reticulum resident protein 29", "gene_name": "ERP29", "tax_name": "Bovine" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30040", "url": "https://www.uniprot.org/uniprotkb/P30040" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9738895", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"Ghosal Nirajan, Tapadar Poulami, Biswas Divisha, Pal Ranjana", "reference": { "type": "PubMed", "id": "38787503", "url": "https://pubmed.ncbi.nlm.nih.gov/38787503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P78545-1", "protein_name": "ETS-related transcription factor Elf-3", "gene_name": "ELF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50591-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBN6-1", "protein_name": "Tumor necrosis factor receptor superfamily member 10D", "gene_name": "TNFRSF10D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P78545", "url": "https://www.uniprot.org/uniprotkb/P78545" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38787503", "abstract": "", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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Part A", "date": "2010-12", "authors": "Khayat Morad, Hardouf Hagar, Zlotogora Joel, Shalev Stavit Allon", "reference": { "type": "PubMed", "id": "21108394", "url": "https://pubmed.ncbi.nlm.nih.gov/21108394" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13216", "url": "https://www.uniprot.org/uniprotkb/Q13216" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21108394", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The C-terminal Region and SUMOylation of Cockayne Syndrome Group B Protein Play Critical Roles in Transcription-coupled Nucleotide Excision Repair.", "journal": "J. Biol. Chem.", "date": "2016", "authors": "Sin Y, Tanaka K, Saijo M", "reference": { "type": "PubMed", "id": "26620705", "url": "https://pubmed.ncbi.nlm.nih.gov/26620705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13216", "url": "https://www.uniprot.org/uniprotkb/Q13216" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1457, "end_pos": 1457, "sequence_org": "K", "sequence_mut": "R", "comment": "No loss of sumoylation; when associated with R-1487 and R-1489.", "evidence": [ { "database": "UniProtKB", "id": "Q03468", "url": "https://www.uniprot.org/uniprotkb/Q03468" }, { "database": "PubMed", "id": "26620705", "url": "https://pubmed.ncbi.nlm.nih.gov/26620705" } ], "uniprot_canonical_ac": "Q03468-1" }, { "start_pos": 1487, "end_pos": 1487, "sequence_org": "K", "sequence_mut": "R", "comment": "No loss of sumoylation; when associated with R-1457 and R-1489. No loss of sumoylation; when associated with R-1489.", "evidence": [ { "database": "UniProtKB", "id": "Q03468", "url": "https://www.uniprot.org/uniprotkb/Q03468" }, { "database": "PubMed", "id": "26620705", "url": "https://pubmed.ncbi.nlm.nih.gov/26620705" } ], "uniprot_canonical_ac": "Q03468-1" }, { "start_pos": 1489, "end_pos": 1489, "sequence_org": "K", "sequence_mut": "R", "comment": "No loss of sumoylation; when associated with R-1457 and R-1487. No loss of sumoylation; when associated with R-1487.", "evidence": [ { "database": "UniProtKB", "id": "Q03468", "url": "https://www.uniprot.org/uniprotkb/Q03468" }, { "database": "PubMed", "id": "26620705", "url": "https://pubmed.ncbi.nlm.nih.gov/26620705" } ], "uniprot_canonical_ac": "Q03468-1" }, { "start_pos": 205, "end_pos": 205, "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of sumoylation and defects in transcription-coupled nucleotide excision repair.", "evidence": [ { "database": "UniProtKB", "id": "Q03468", "url": "https://www.uniprot.org/uniprotkb/Q03468" }, { "database": "PubMed", "id": "26620705", "url": "https://pubmed.ncbi.nlm.nih.gov/26620705" } ], "uniprot_canonical_ac": "Q03468-1" } ], "record_id": "pubmed.26620705", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CSA and CSB play a role in the response to DNA breaks.", "journal": "Oncotarget", "date": "2018", "authors": "Pascucci B, Fragale A, Marabitti V, Leuzzi G, Calcagnile AS, Parlanti E, Franchitto A, Dogliotti E, D'Errico M", "reference": { "type": "PubMed", "id": "29545921", "url": "https://pubmed.ncbi.nlm.nih.gov/29545921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" 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"end_pos": 577, "sequence_org": "C", "sequence_mut": "A", "comment": "Defects in transcription-coupled nucleotide excision repair (TC-NER); when associated with A-567, A-585 and A-588.", "evidence": [ { "database": "UniProtKB", "id": "Q2YD98", "url": "https://www.uniprot.org/uniprotkb/Q2YD98" }, { "database": "PubMed", "id": "38316879", "url": "https://pubmed.ncbi.nlm.nih.gov/38316879" } ], "uniprot_canonical_ac": "Q2YD98-1" }, { "start_pos": 585, "end_pos": 585, "sequence_org": "C", "sequence_mut": "A", "comment": "Defects in transcription-coupled nucleotide excision repair (TC-NER); when associated with A-567, A-577 and A-588.", "evidence": [ { "database": "UniProtKB", "id": "Q2YD98", "url": "https://www.uniprot.org/uniprotkb/Q2YD98" }, { "database": "PubMed", "id": "38316879", "url": "https://pubmed.ncbi.nlm.nih.gov/38316879" } ], "uniprot_canonical_ac": "Q2YD98-1" }, { "start_pos": 588, "end_pos": 588, "sequence_org": "H", "sequence_mut": "A", "comment": "Defects in 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"evidence": [ { "database": "UniProtKB", "id": "P60002", "url": "https://www.uniprot.org/uniprotkb/P60002" }, { "database": "PubMed", "id": "38316879", "url": "https://pubmed.ncbi.nlm.nih.gov/38316879" } ], "uniprot_canonical_ac": "P60002-1" }, { "start_pos": 55, "end_pos": 55, "sequence_org": "E", "sequence_mut": "A", "comment": "Does not affect transcription-coupled nucleotide excision repair (TC-NER); when associated with A-79.", "evidence": [ { "database": "UniProtKB", "id": "P60002", "url": "https://www.uniprot.org/uniprotkb/P60002" }, { "database": "PubMed", "id": "38316879", "url": "https://pubmed.ncbi.nlm.nih.gov/38316879" } ], "uniprot_canonical_ac": "P60002-1" }, { "start_pos": 79, "end_pos": 79, "sequence_org": "E", "sequence_mut": "A", "comment": "Does not affect transcription-coupled nucleotide excision repair (TC-NER); when associated with A-55.", "evidence": [ { "database": "UniProtKB", "id": "P60002", "url": "https://www.uniprot.org/uniprotkb/P60002" }, { "database": 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Iyer N, McDaniel L D, Reagan M S, Legerski R, Schultz R A, Stefanini M, Lehmann A R, Mayne L V, Friedberg E C", "reference": { "type": "PubMed", "id": "7664335", "url": "https://pubmed.ncbi.nlm.nih.gov/7664335" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13216", "url": "https://www.uniprot.org/uniprotkb/Q13216" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7664335", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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{ "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fine mapping of chromosome 3q22.3 identifies two haplotype blocks in ESYT3 associated with coronary artery disease in female Han Chinese.", "journal": "Atherosclerosis", "date": "2011", "authors": "Jiang F, Dong Y, Wu C, Yang X, Zhao L, Guo J, Li Y, Dong J, Zheng GY, Cao H, Jin L, Ren Y, Cheng W, Li W, Tian XL, Li X", "reference": { "type": "PubMed", "id": "21733517", "url": "https://pubmed.ncbi.nlm.nih.gov/21733517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0FGR9-1", "protein_name": "Extended synaptotagmin-3", "gene_name": "ESYT3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "A0FGR9", "url": "https://www.uniprot.org/uniprotkb/A0FGR9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Extended Synaptotagmin Interaction with the Fibroblast Growth Factor Receptor Depends on Receptor Conformation, Not Catalytic Activity.", "journal": "The Journal of biological chemistry", "date": "2015", 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