[ { "title": "The Ink4a tumor suppressor gene product, p19Arf, interacts with MDM2 and neutralizes MDM2's inhibition of p53.", "journal": "Cell", "date": "1998-03-20", "authors": "Pomerantz J, Schreiber-Agus N, Li\u00e9geois N J, Silverman A, Alland L, Chin L, Potes J, Chen K, Orlow I, Lee H W, Cordon-Cardo C, DePinho R A", "reference": { "type": "PubMed", "id": "9529248", "url": "https://pubmed.ncbi.nlm.nih.gov/9529248" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64364-1", "protein_name": "Tumor suppressor ARF", "gene_name": "Cdkn2a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64364", "url": "https://www.uniprot.org/uniprotkb/Q64364" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9529248", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Genet.", "date": "2007", "authors": "Bowman AB, Lam YC, Jafar-Nejad P, Chen HK, Richman R, Samaco RC, Fryer JD, Kahle JJ, Orr HT, Zoghbi HY", "reference": { "type": "PubMed", "id": "17322884", "url": "https://pubmed.ncbi.nlm.nih.gov/17322884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TQH0-1", "protein_name": "Ataxin-2-like protein", "gene_name": "Atxn2l", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q924A2-4", "protein_name": "Protein capicua homolog", "gene_name": "Cic", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0C7T6-1", "protein_name": "Ataxin-1-like", "gene_name": "Atxn1l", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P54254-1", "protein_name": "Ataxin-1", "gene_name": "Atxn1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TQH0", "url": "https://www.uniprot.org/uniprotkb/Q7TQH0" } ], "common_name": "Mouse", "glygen_name": "Mouse", 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gastrulation in mice lacking the gene of the ADP-ribosylation factor-related protein 1.", "journal": "Mol. 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Biol.", "date": "2012", "authors": "Hesse D, Jaschke A, Kanzleiter T, Witte N, Augustin R, Hommel A, Puschel GP, Petzke KJ, Joost HG, Schupp M, Schurmann A", "reference": { "type": "PubMed", "id": "22927645", "url": "https://pubmed.ncbi.nlm.nih.gov/22927645" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BXL7-1", "protein_name": "ADP-ribosylation factor-related protein 1", "gene_name": "Arfrp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BXL7", "url": "https://www.uniprot.org/uniprotkb/Q8BXL7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22927645", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aberrant membranes and double-membrane structures accumulate in the axons of Atg5-null Purkinje cells before neuronal death.", "journal": "Autophagy", "date": "2007", "authors": "Nishiyama Jun, Miura Eriko, Mizushima Noboru, Watanabe Masahiko, Yuzaki Michisuke", "reference": { "type": "PubMed", "id": "17912025", "url": "https://pubmed.ncbi.nlm.nih.gov/17912025" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99J83-1", "protein_name": "Autophagy protein 5", "gene_name": "Atg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99J83", "url": "https://www.uniprot.org/uniprotkb/Q99J83" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17912025", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The autophagy gene ATG5 plays an essential role in B lymphocyte development.", "journal": "Autophagy", "date": "2008-04", "authors": "Miller Brian C, Zhao Zijiang, Stephenson Linda M, Cadwell Ken, Pua Heather H, Lee Heung Kyu, Mizushima Noboru N, Iwasaki Akiko, He You-Wen, Swat Wojciech, Virgin Herbert W", "reference": { "type": "PubMed", "id": "18188005", "url": "https://pubmed.ncbi.nlm.nih.gov/18188005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99J83-1", "protein_name": "Autophagy protein 5", "gene_name": "Atg5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99J83", "url": "https://www.uniprot.org/uniprotkb/Q99J83" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18188005", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Atg8 conjugation system is indispensable for proper development of autophagic isolation membranes in mice.", "journal": "Mol. Biol. Cell", "date": "2008", "authors": "Sou YS, Waguri S, Iwata J, Ueno T, Fujimura T, Hara T, Sawada N, Yamada A, Mizushima N, Uchiyama Y, Kominami E, Tanaka K, Komatsu M", "reference": { "type": "PubMed", "id": "18768753", "url": "https://pubmed.ncbi.nlm.nih.gov/18768753" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99J83-1", "protein_name": "Autophagy protein 5", "gene_name": "Atg5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CQY1-1", "protein_name": "Ubiquitin-like protein ATG12", "gene_name": "Atg12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CPX6-1", "protein_name": "Ubiquitin-like-conjugating enzyme ATG3", "gene_name": "Atg3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99J83", "url": "https://www.uniprot.org/uniprotkb/Q99J83" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": 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"Armcx1 Reduces Neurological Damage Via a Mitochondrial Transport Pathway Involving Miro1 After Traumatic Brain Injury.", "journal": "Neuroscience", "date": "2024-05-03", "authors": "Li Qiuying, Ni Haibo, Rui Qin, Ding Jiasheng, Kong Xianghu, Kan Xugang, Gao Rong, Shen Hongbo", "reference": { "type": "PubMed", "id": "38492796", "url": "https://pubmed.ncbi.nlm.nih.gov/38492796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CX83-1", "protein_name": "Armadillo repeat-containing X-linked protein 1", "gene_name": "Armcx1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CX83", "url": "https://www.uniprot.org/uniprotkb/Q9CX83" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38492796", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Biol. Chem.", "date": "2001", "authors": "Peters CS, Liang X, Li S, Kannan S, Peng Y, Taub R, Diamond RH", "reference": { "type": "PubMed", "id": "11278933", "url": "https://pubmed.ncbi.nlm.nih.gov/11278933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70191-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "Atf5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q63739-1", "protein_name": "Protein tyrosine phosphatase type IVA 1", "gene_name": "Ptp4a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70191", "url": "https://www.uniprot.org/uniprotkb/O70191" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 104, "end_pos": 104, "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes activity.", "evidence": [ { "database": "UniProtKB", "id": "Q63739", "url": "https://www.uniprot.org/uniprotkb/Q63739" }, { "database": "PubMed", "id": "11278933", "url": "https://pubmed.ncbi.nlm.nih.gov/11278933" } ], "uniprot_canonical_ac": "Q63739-1" } ], "record_id": "pubmed.11278933", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of human Siglec-11. A recently evolved signaling molecule that can interact with SHP-1 and SHP-2 and is expressed by tissue macrophages, including brain microglia.", "journal": "J. Biol. Chem.", "date": "2002", "authors": "Angata T, Kerr SC, Greaves DR, Varki NM, Crocker PR, Varki A", "reference": { "type": "PubMed", "id": "11986327", "url": "https://pubmed.ncbi.nlm.nih.gov/11986327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70191-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "Atf5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K3G5-1", "protein_name": "Serine/threonine-protein kinase VRK3", "gene_name": "Vrk3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RL6-1", "protein_name": "Sialic acid-binding Ig-like lectin 11", "gene_name": "SIGLEC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMB1-1", "protein_name": "Sialic acid-binding Ig-like lectin 16", "gene_name": "SIGLEC16", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70191", "url": "https://www.uniprot.org/uniprotkb/O70191" } ], 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of apoptosis by ATFx: a novel role for a member of the ATF/CREB family of mammalian bZIP transcription factors.", "journal": "Genes & development", "date": "2002", "authors": "Persengiev SP, Devireddy LR, Green MR", "reference": { "type": "PubMed", "id": "12130540", "url": "https://pubmed.ncbi.nlm.nih.gov/12130540" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70191-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "Atf5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70191", "url": "https://www.uniprot.org/uniprotkb/O70191" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12130540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Genet.", "date": "1996", "authors": "Pulst S M, Nechiporuk A, Nechiporuk T, Gispert S, Chen X N, Lopes-Cendes I, Pearlman S, Starkman S, Orozco-Diaz G, Lunkes A, DeJong P, Rouleau G A, Auburger G, Korenberg J R, Figueroa C, Sahba S", "reference": { "type": "PubMed", "id": "8896555", "url": "https://pubmed.ncbi.nlm.nih.gov/8896555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70305-1", "protein_name": "Ataxin-2", "gene_name": "Atxn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99700-1", "protein_name": "Ataxin-2", "gene_name": "ATXN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWM7-1", "protein_name": "Ataxin-2-like protein", "gene_name": "ATXN2L", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70305", "url": "https://www.uniprot.org/uniprotkb/O70305" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8896555", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The mouse SCA2 gene: cDNA sequence, alternative splicing and protein expression.", "journal": "Hum. Mol. Genet.", "date": "1998", "authors": "Nechiporuk T, Huynh DP, Figueroa K, Sahba S, Nechiporuk A, Pulst SM", "reference": { "type": "PubMed", "id": "9668173", "url": "https://pubmed.ncbi.nlm.nih.gov/9668173" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70305-1", "protein_name": "Ataxin-2", "gene_name": "Atxn2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70305", "url": "https://www.uniprot.org/uniprotkb/O70305" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9668173", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"S", "sequence_mut": "A", "comment": "No effect on the RAD9A interaction after MMS exposure. Resists to DNA damage after MMS exposure.", "evidence": [ { "database": "UniProtKB", "id": "Q96QE3", "url": "https://www.uniprot.org/uniprotkb/Q96QE3" }, { "database": "PubMed", "id": "15983387", "url": "https://pubmed.ncbi.nlm.nih.gov/15983387" } ], "uniprot_canonical_ac": "Q96QE3-1" }, { "start_pos": 1187, "end_pos": 1187, "sequence_org": "S", "sequence_mut": "A", "comment": "Weakly affects the RAD9A interaction after MMS exposure.", "evidence": [ { "database": "UniProtKB", "id": "Q96QE3", "url": "https://www.uniprot.org/uniprotkb/Q96QE3" }, { "database": "PubMed", "id": "15983387", "url": "https://pubmed.ncbi.nlm.nih.gov/15983387" } ], "uniprot_canonical_ac": "Q96QE3-1" }, { "start_pos": 1430, "end_pos": 1430, "sequence_org": "C", "sequence_mut": "G", "comment": "Abolishes RB1 binding. Abolishes RB1 binding; when associated with K-1432. Weakly detected after methyl methane-sulfonate (MMS) treatment. Expression detected after MMS treatment; when associated with K-1432. Weakly affects the RAD9A interaction after MMS exposure. No effect on the RAD9A interaction after MMS exposure; when associated with K-1432. Resists to DNA damage after MMS exposure; when associated with K-1432.", "evidence": [ { "database": "UniProtKB", "id": "Q96QE3", "url": "https://www.uniprot.org/uniprotkb/Q96QE3" }, { "database": "PubMed", "id": "15983387", "url": "https://pubmed.ncbi.nlm.nih.gov/15983387" } ], "uniprot_canonical_ac": "Q96QE3-1" }, { "start_pos": 1432, "end_pos": 1432, "sequence_org": "E", "sequence_mut": "K", "comment": "Abolishes RB1 binding; when associated with G-1430. Expression detected after methyl methane-sulfonate (MMS) treatment; when associated with G-1430. No effect on the RAD9A interaction after MMS exposure; when associated with G-1430. Resists to DNA damage after MMS exposure; when associated with G-1430.", "evidence": [ { "database": "UniProtKB", "id": "Q96QE3", "url": "https://www.uniprot.org/uniprotkb/Q96QE3" }, { "database": "PubMed", "id": "15983387", "url": "https://pubmed.ncbi.nlm.nih.gov/15983387" } ], "uniprot_canonical_ac": "Q96QE3-1" } ], "record_id": "pubmed.15983387", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Predisposition to cancer caused by genetic and functional defects of mammalian Atad5.", "journal": "PLoS genetics", "date": "2011", "authors": "Bell DW, Sikdar N, Lee KY, Price JC, Chatterjee R, Park HD, Fox J, Ishiai M, Rudd ML, Pollock LM, Fogoros SK, Mohamed H, Hanigan CL, Zhang S, Cruz P, Renaud G, Hansen NF, Cherukuri PF, Borate B, McManus KJ, Stoepel J, Sipahimalani P, Godwin AK, Sgroi DC, Merino MJ, Elliot G, Elkahloun A, Vinson C, Takata M, Mullikin JC, Wolfsberg TG, Hieter P, Lim DS, Myung K", "reference": { "type": "PubMed", "id": "21901109", "url": "https://pubmed.ncbi.nlm.nih.gov/21901109" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4QY64-1", "protein_name": "ATPase family AAA domain-containing protein 5", "gene_name": "Atad5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": 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decreases B cell division and Igh recombination.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2015", "authors": "Zanotti KJ, Maul RW, Castiblanco DP, Yang W, Choi YJ, Fox JT, Myung K, Saribasak H, Gearhart PJ", "reference": { "type": "PubMed", "id": "25404367", "url": "https://pubmed.ncbi.nlm.nih.gov/25404367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4QY64-1", "protein_name": "ATPase family AAA domain-containing protein 5", "gene_name": "Atad5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q4QY64", "url": "https://www.uniprot.org/uniprotkb/Q4QY64" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25404367", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Chem.", "date": "1987", "authors": "Shaffer JB, Sutton RB, Bewley GC", "reference": { "type": "PubMed", "id": "3654595", "url": "https://pubmed.ncbi.nlm.nih.gov/3654595" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24270-1", "protein_name": "Catalase", "gene_name": "Cat", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P24270", "url": "https://www.uniprot.org/uniprotkb/P24270" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.3654595", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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repair and accelerates senescence in Zmpste24-deficient cells.", "journal": "Cell cycle (Georgetown, Tex.)", "date": "2014", "authors": "Liu J, Yin X, Liu B, Zheng H, Zhou G, Gong L, Li M, Li X, Wang Y, Hu J, Krishnan V, Zhou Z, Wang Z", "reference": { "type": "PubMed", "id": "24584199", "url": "https://pubmed.ncbi.nlm.nih.gov/24584199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61686-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "Cbx5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61686", "url": "https://www.uniprot.org/uniprotkb/Q61686" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 50, "end_pos": 50, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61686", "url": 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autoreactive T cells from New Zealand Black mice respond to a dominant erythrocyte Band 3 peptide.", "journal": "Immunology", "date": "1999-04", "authors": "Shen C R, Wraith D C, Elson C J", "reference": { "type": "PubMed", "id": "10233746", "url": "https://pubmed.ncbi.nlm.nih.gov/10233746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04919-1", "protein_name": "Band 3 anion transport protein", "gene_name": "Slc4a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P04919", "url": "https://www.uniprot.org/uniprotkb/P04919" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10233746", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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of the murine anion exchange protein.", "journal": "Nature", "date": "1985", "authors": "Kopito R R, Lodish H F", "reference": { "type": "PubMed", "id": "2410791", "url": "https://pubmed.ncbi.nlm.nih.gov/2410791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P04919-1", "protein_name": "Band 3 anion transport protein", "gene_name": "Slc4a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P04919", "url": "https://www.uniprot.org/uniprotkb/P04919" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2410791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, 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"Expression and location of Hsp70/Hsc-binding anti-apoptotic protein BAG-1 and its variants in normal tissues and tumor cell lines.", "journal": "Cancer Res.", "date": "1998", "authors": "Takayama S, Krajewski S, Krajewska M, Kitada S, Zapata JM, Kochel K, Knee D, Scudiero D, Tudor G, Miller GJ, Miyashita T, Yamada M, Reed JC", "reference": { "type": "PubMed", "id": "9679980", "url": "https://pubmed.ncbi.nlm.nih.gov/9679980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60739-1", "protein_name": "BAG family molecular chaperone regulator 1", "gene_name": "Bag1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99933-1", "protein_name": "BAG family molecular chaperone regulator 1", "gene_name": "BAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": 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behavior in male mice deficient for the beta1-3 N-acetylglucosaminyltransferase-I gene.", "journal": "Molecular reproduction and development", "date": "2008", "authors": "Biellmann F, Henion TR, Burki K, Hennet T", "reference": { "type": "PubMed", "id": "18008318", "url": "https://pubmed.ncbi.nlm.nih.gov/18008318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BWP8-1", "protein_name": "Beta-1,4-glucuronyltransferase 1", "gene_name": "B4gat1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z222-1", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene_name": "B3GNT2; B3gnt2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BWP8", "url": "https://www.uniprot.org/uniprotkb/Q8BWP8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18008318", "abstract": "", 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Dev.", "date": "2002", "authors": "Vacalla CM, Theil T", "reference": { "type": "PubMed", "id": "12351199", "url": "https://pubmed.ncbi.nlm.nih.gov/12351199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CWL2-1", "protein_name": "Zinc finger protein castor homolog 1", "gene_name": "Casz1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CWL2", "url": "https://www.uniprot.org/uniprotkb/Q9CWL2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12351199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and characterization of human Castor, a novel human gene upregulated during cell differentiation.", "journal": "Biochem. 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Commun.", "date": "2006", "authors": "Liu Z, Yang X, Tan F, Cullion K, Thiele CJ", "reference": { "type": "PubMed", "id": "16631614", "url": "https://pubmed.ncbi.nlm.nih.gov/16631614" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CWL2-1", "protein_name": "Zinc finger protein castor homolog 1", "gene_name": "Casz1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q86V15-1", "protein_name": "Zinc finger protein castor homolog 1", "gene_name": "CASZ1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CWL2", "url": "https://www.uniprot.org/uniprotkb/Q9CWL2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16631614", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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