[ { "title": "The Saccharomyces cerevisiae gene SDS22 encodes a potential regulator of the mitotic function of yeast type 1 protein phosphatase.", "journal": "Mol. Cell. Biol.", "date": "1995", "authors": "MacKelvie S H, Andrews P D, Stark M J", "reference": { "type": "PubMed", "id": "7791785", "url": "https://pubmed.ncbi.nlm.nih.gov/7791785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36047-1", "protein_name": "Protein phosphatase 1 regulatory subunit SDS22", "gene_name": "SDS22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07236-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "MST1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36047", "url": "https://www.uniprot.org/uniprotkb/P36047" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7791785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"reference": { "type": "PubMed", "id": "8091858", "url": "https://pubmed.ncbi.nlm.nih.gov/8091858" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36048-1", "protein_name": "Pre-mRNA-splicing factor SNU114", "gene_name": "SNU114", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36049-1", "protein_name": "rRNA-processing protein EBP2", "gene_name": "EBP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34239-1", "protein_name": "Protein LST4", "gene_name": "LST4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34240-1", "protein_name": "Zinc-regulated transporter 3", "gene_name": "ZRT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35996-1", "protein_name": "Large ribosomal subunit protein uL14m", "gene_name": "MRPL38", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36004-1", "protein_name": "Probable serine/threonine-protein kinase KKQ8", "gene_name": "KKQ8", "tax_name": "Baker's yeast" }, { 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"journal": "Molecular biology of the cell", "date": "1999", "authors": "Gaynor EC, Mondesert G, Grimme SJ, Reed SI, Orlean P, Emr SD", "reference": { "type": "PubMed", "id": "10069808", "url": "https://pubmed.ncbi.nlm.nih.gov/10069808" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36051-1", "protein_name": "GPI ethanolamine phosphate transferase 1", "gene_name": "MCD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O94777-1", "protein_name": "Dolichol phosphate-mannose biosynthesis regulatory protein", "gene_name": "DPM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37287-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "PIGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H8A4-1", "protein_name": "GPI ethanolamine phosphate transferase 2, catalytic subunit", "gene_name": "PIGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBF5-1", "protein_name": "GPI 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[] } ] }, { "title": "A novel vacuolar protein encoded by SSU21 / MCD4 is involved in cell wall integrity in yeast.", "journal": "Yeast (Chichester, England)", "date": "1999-10", "authors": "Packeiser A N, Urakov V N, Polyakova Y A, Shimanova N I, Shcherbukhin V D, Smirnov V N, Ter-Avanesyan M D", "reference": { "type": "PubMed", "id": "10514566", "url": "https://pubmed.ncbi.nlm.nih.gov/10514566" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36051-1", "protein_name": "GPI ethanolamine phosphate transferase 1", "gene_name": "MCD4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36051", "url": "https://www.uniprot.org/uniprotkb/P36051" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10514566", "abstract": "", "glycosylation": [], "mutagenesis": 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Cell", "date": "2004", "authors": "Krantz Marcus, Nordlander Bodil, Valadi Hadi, Johansson Mikael, Gustafsson Lena, Hohmann Stefan", "reference": { "type": "PubMed", "id": "15590813", "url": "https://pubmed.ncbi.nlm.nih.gov/15590813" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36060-1", "protein_name": "NADH-cytochrome b5 reductase 2", "gene_name": "MCR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36060", "url": "https://www.uniprot.org/uniprotkb/P36060" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15590813", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Integral membrane proteins in the mitochondrial outer membrane of Saccharomyces cerevisiae.", "journal": "FEBS J.", "date": "2006", "authors": "Burri Lena, Vascotto Katherine, Gentle Ian E, Chan Nickie C, Beilharz Traude, Stapleton David I, Ramage Lynn, Lithgow Trevor", "reference": { "type": "PubMed", "id": "16689936", "url": "https://pubmed.ncbi.nlm.nih.gov/16689936" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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Cell Biol.", "date": "1996", "authors": "Donaldson A D, Kilmartin J V", "reference": { "type": "PubMed", "id": "8603920", "url": "https://pubmed.ncbi.nlm.nih.gov/8603920" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36094-1", "protein_name": "Spindle pole body component SPC42", "gene_name": "SPC42", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36094", "url": "https://www.uniprot.org/uniprotkb/P36094" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8603920", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ordered assembly of the ESCRT-III complex on endosomes is required to sequester cargo during MVB formation.", "journal": "Dev. 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Biol.", "date": "2004", "authors": "Cheng Hailing, He Xiaoyuan, Moore Claire", "reference": { "type": "PubMed", "id": "15024081", "url": "https://pubmed.ncbi.nlm.nih.gov/15024081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36104-1", "protein_name": "COMPASS component SWD2", "gene_name": "SWD2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36104", "url": "https://www.uniprot.org/uniprotkb/P36104" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15024081", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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K\u00f6rner Christian, Jagasia Ravi, Keil Thomas, Baumeister Wolfgang, Cyrklaff Marek, Neupert Walter, Reichert Andreas S", "reference": { "type": "PubMed", "id": "19528297", "url": "https://pubmed.ncbi.nlm.nih.gov/19528297" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36112-1", "protein_name": "MICOS complex subunit MIC60", "gene_name": "MIC60", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36112", "url": "https://www.uniprot.org/uniprotkb/P36112" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.19528297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vps51 is part of the yeast Vps fifty-three tethering complex essential for retrograde traffic from the early endosome and Cvt vesicle completion.", "journal": "The Journal of biological chemistry", "date": "2003-02-14", "authors": "Reggiori Fulvio, Wang Chao-Wen, Stromhaug Per E, Shintani Takahiro, Klionsky Daniel J", "reference": { "type": "PubMed", "id": "12446664", "url": "https://pubmed.ncbi.nlm.nih.gov/12446664" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36116-1", "protein_name": "Vacuolar protein sorting-associated protein 51", "gene_name": "VPS51", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39904-1", "protein_name": "Vacuolar protein sorting-associated protein 52", "gene_name": "VPS52", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47061-1", "protein_name": "Vacuolar protein sorting-associated protein 53", "gene_name": "VPS53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12071-1", "protein_name": "Vacuolar protein sorting-associated protein 54", "gene_name": "VPS54", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35193-1", "protein_name": "Autophagy-related protein 19", "gene_name": "ATG19", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36116", "url": "https://www.uniprot.org/uniprotkb/P36116" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12446664", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vps51p mediates the association of the GARP (Vps52/53/54) complex with the late Golgi t-SNARE Tlg1p.", "journal": "Molecular biology of the cell", "date": "2003-04", "authors": "Conibear Elizabeth, Cleck Jessica N, Stevens Tom H", "reference": { "type": "PubMed", "id": "12686613", "url": "https://pubmed.ncbi.nlm.nih.gov/12686613" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36116-1", "protein_name": "Vacuolar protein sorting-associated protein 51", "gene_name": "VPS51", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39904-1", "protein_name": "Vacuolar protein sorting-associated protein 52", "gene_name": "VPS52", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47061-1", "protein_name": "Vacuolar protein sorting-associated protein 53", "gene_name": "VPS53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03322-1", "protein_name": "t-SNARE affecting a late Golgi compartment protein 1", "gene_name": "TLG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12071-1", "protein_name": "Vacuolar protein sorting-associated protein 54", "gene_name": "VPS54", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": 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"Decoding of the ubiquitin code for clearance of colliding ribosomes by the RQT complex.", "journal": "Nature communications", "date": "2023-01-10", "authors": "Matsuo Yoshitaka, Uchihashi Takayuki, Inada Toshifumi", "reference": { "type": "PubMed", "id": "36627279", "url": "https://pubmed.ncbi.nlm.nih.gov/36627279" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36119-1", "protein_name": "RQC trigger complex subunit RQT4", "gene_name": "RQT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05580-1", "protein_name": "E3 ubiquitin-protein ligase HEL2", "gene_name": "HEL2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38701-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53137-1", "protein_name": "RQC trigger complex subunit CUE3", "gene_name": "CUE3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae 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Cell", "date": "2006", "authors": "Barreto Lina, Garcer\u00e1 Ana, Jansson Kristina, Sunnerhagen Per, Herrero Enrique", "reference": { "type": "PubMed", "id": "16936141", "url": "https://pubmed.ncbi.nlm.nih.gov/16936141" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36156-1", "protein_name": "Glutathione S-transferase omega-like 2", "gene_name": "ECM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48239-1", "protein_name": "Glutathione S-transferase omega-like 1", "gene_name": "GTO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04806-1", "protein_name": "Glutathione S-transferase omega-like 3", "gene_name": "GTO3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36156", "url": "https://www.uniprot.org/uniprotkb/P36156" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces 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