[ { "title": "Bromodomain factor 1 corresponds to a missing piece of yeast TFIID.", "journal": "Genes & development", "date": "2000-04-15", "authors": "Matangkasombut O, Buratowski R M, Swilling N W, Buratowski S", "reference": { "type": "PubMed", "id": "10783167", "url": "https://pubmed.ncbi.nlm.nih.gov/10783167" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35817-1", "protein_name": "Bromodomain-containing factor 1", "gene_name": "BDF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05021-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07442-1", "protein_name": "Bromodomain-containing factor 2", "gene_name": "BDF2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35817", "url": "https://www.uniprot.org/uniprotkb/P35817" } ], 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"Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35817", "url": "https://www.uniprot.org/uniprotkb/P35817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15255905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary.", "journal": "Genetics", "date": "2005", "authors": "Jambunathan Nithya, Martinez Adam W, Robert Elizabeth C, Agochukwu Nneamaka B, Ibos Megan E, Dugas Sandra L, Donze David", "reference": { "type": "PubMed", "id": "16079223", "url": "https://pubmed.ncbi.nlm.nih.gov/16079223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35817-1", "protein_name": "Bromodomain-containing factor 1", "gene_name": "BDF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40963-1", "protein_name": "Histone acetyltransferase SAS2", "gene_name": "SAS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06488-1", "protein_name": "Chromatin structure-remodeling complex subunit RSC2", "gene_name": "RSC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q99314-1", "protein_name": "Something about silencing protein 5", "gene_name": "SAS5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40340-1", "protein_name": "ATPase histone chaperone YTA7", "gene_name": "YTA7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04003-1", "protein_name": "Something about silencing protein 4", "gene_name": "SAS4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32561-1", "protein_name": "Histone deacetylase RPD3", "gene_name": "RPD3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35817", "url": "https://www.uniprot.org/uniprotkb/P35817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16079223", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNAs.", "journal": "Nucleic acids research", "date": "1994-12-11", "authors": "Lygerou Z, Conesa C, Lesage P, Swanson R N, Ruet A, Carlson M, Sentenac A, S\u00e9raphin B", "reference": { "type": "PubMed", "id": "7816623", "url": "https://pubmed.ncbi.nlm.nih.gov/7816623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35817-1", "protein_name": "Bromodomain-containing factor 1", "gene_name": "BDF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06053-1", "protein_name": "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]", "gene_name": "DUS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35207-1", "protein_name": "Antiviral helicase SKI2", "gene_name": "SKI2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35817", "url": "https://www.uniprot.org/uniprotkb/P35817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7816623", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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Cell. Biol.", "date": "1993", "authors": "Widner W R, Wickner R B", "reference": { "type": "PubMed", "id": "8321235", "url": "https://pubmed.ncbi.nlm.nih.gov/8321235" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35817-1", "protein_name": "Bromodomain-containing factor 1", "gene_name": "BDF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35207-1", "protein_name": "Antiviral helicase SKI2", "gene_name": "SKI2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35817", "url": "https://www.uniprot.org/uniprotkb/P35817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8321235", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The bromodomain revisited.", "journal": "Trends Biochem. Sci.", "date": "1997", "authors": "Jeanmougin F, Wurtz J M, Le Douarin B, Chambon P, Losson R", "reference": { "type": "PubMed", "id": "9175470", "url": "https://pubmed.ncbi.nlm.nih.gov/9175470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35817-1", "protein_name": "Bromodomain-containing factor 1", "gene_name": "BDF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07442-1", "protein_name": "Bromodomain-containing factor 2", "gene_name": "BDF2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35817", "url": "https://www.uniprot.org/uniprotkb/P35817" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9175470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ 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"name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35843", "url": "https://www.uniprot.org/uniprotkb/P35843" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11238399", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A role for yeast oxysterol-binding protein homologs in endocytosis and in the maintenance of intracellular sterol-lipid distribution.", "journal": "Journal of cell science", "date": "2004-06-15", "authors": "Beh Christopher T, Rine Jasper", "reference": { "type": "PubMed", "id": "15173322", "url": "https://pubmed.ncbi.nlm.nih.gov/15173322" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35843-1", "protein_name": "Oxysterol-binding protein homolog 5", "gene_name": "HES1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35845-1", "protein_name": "Oxysterol-binding protein homolog 1", "gene_name": "SWH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38713-1", "protein_name": "Oxysterol-binding protein homolog 3", "gene_name": "OSH3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38755-1", "protein_name": "Oxysterol-binding protein homolog 7", "gene_name": "OSH7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12451-1", "protein_name": "Oxysterol-binding protein homolog 2", "gene_name": "OSH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02201-1", "protein_name": "Oxysterol-binding protein homolog 6", "gene_name": "OSH6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35844-1", "protein_name": "Oxysterol-binding protein homolog 4", "gene_name": "KES1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35843", "url": "https://www.uniprot.org/uniprotkb/P35843" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15173322", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sterol binding assay using surface plasmon fluorescence spectroscopy.", "journal": "Analytical chemistry", "date": "2006-01-15", "authors": "Wiltschi Birgit, Schober Michael, Kohlwein Sepp D, Oesterhelt Dieter, Sinner Eva-Kathrin", "reference": { "type": "PubMed", "id": "16408938", "url": "https://pubmed.ncbi.nlm.nih.gov/16408938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35843-1", "protein_name": "Oxysterol-binding protein homolog 5", "gene_name": "HES1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35843", "url": "https://www.uniprot.org/uniprotkb/P35843" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16408938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Cell Sci.", "date": "2004", "authors": "Kvam Erik, Goldfarb David S", "reference": { "type": "PubMed", "id": "15367582", "url": "https://pubmed.ncbi.nlm.nih.gov/15367582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35845-1", "protein_name": "Oxysterol-binding protein homolog 1", "gene_name": "SWH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38881-1", "protein_name": "Nucleus-vacuole junction protein 1", "gene_name": "NVJ1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35845", "url": "https://www.uniprot.org/uniprotkb/P35845" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15367582", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Mol. Life Sci.", "date": "2015", "authors": "Weber-Boyvat Marion, Kentala Henriikka, Per\u00e4nen Johan, Olkkonen Vesa M", "reference": { "type": "PubMed", "id": "25420878", "url": "https://pubmed.ncbi.nlm.nih.gov/25420878" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35845-1", "protein_name": "Oxysterol-binding protein homolog 1", "gene_name": "SWH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35845", "url": "https://www.uniprot.org/uniprotkb/P35845" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.25420878", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Mol. Genet.", "date": "1999", "authors": "Branda S S, Yang Z Y, Chew A, Isaya G", "reference": { "type": "PubMed", "id": "10332043", "url": "https://pubmed.ncbi.nlm.nih.gov/10332043" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35999-1", "protein_name": "Mitochondrial intermediate peptidase", "gene_name": "OCT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35999", "url": "https://www.uniprot.org/uniprotkb/P35999" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10332043", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Biol. Chem.", "date": "2015", "authors": "Reed Benjamin J, Locke Melissa N, Gardner Richard G", "reference": { "type": "PubMed", "id": "26149687", "url": "https://pubmed.ncbi.nlm.nih.gov/26149687" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36009-1", "protein_name": "Probable ATP-dependent RNA helicase DHR2", "gene_name": "DHR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53874-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 10", "gene_name": "UBP10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53254-1", "protein_name": "U3 small nucleolar RNA-associated protein 22", "gene_name": "UTP22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11978-1", "protein_name": "Regulatory protein SIR4", "gene_name": "SIR4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36009", "url": 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that distinguish the centromere-specific function of histone variant Cse4p from histone H3.", "journal": "Molecular and cellular biology", "date": "1999-09", "authors": "Keith K C, Baker R E, Chen Y, Harris K, Stoler S, Fitzgerald-Hayes M", "reference": { "type": "PubMed", "id": "10454560", "url": "https://pubmed.ncbi.nlm.nih.gov/10454560" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36012-1", "protein_name": "Histone H3-like centromeric protein CSE4", "gene_name": "CSE4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36012", "url": "https://www.uniprot.org/uniprotkb/P36012" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10454560", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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active centromeres in budding yeast.", "journal": "Eukaryotic cell", "date": "2004-12", "authors": "Morey Lisa, Barnes Kelly, Chen Yinhuai, Fitzgerald-Hayes Molly, Baker Richard E", "reference": { "type": "PubMed", "id": "15590827", "url": "https://pubmed.ncbi.nlm.nih.gov/15590827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36012-1", "protein_name": "Histone H3-like centromeric protein CSE4", "gene_name": "CSE4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36012", "url": "https://www.uniprot.org/uniprotkb/P36012" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15590827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Biol.", "date": "2006", "authors": "Bloom Kerry, Sharma Shantanu, Dokholyan Nikolay V", "reference": { "type": "PubMed", "id": "16631569", "url": "https://pubmed.ncbi.nlm.nih.gov/16631569" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36012-1", "protein_name": "Histone H3-like centromeric protein CSE4", "gene_name": "CSE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02294-1", "protein_name": "Histone H2B.2", "gene_name": "HTB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02309-1", "protein_name": "Histone H4", "gene_name": "HHF1; HHF2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36012", "url": "https://www.uniprot.org/uniprotkb/P36012" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16631569", "abstract": 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Bacteriol.", "date": "1998", "authors": "Boles E, de Jong-Gubbels P, Pronk J T", "reference": { "type": "PubMed", "id": "9603875", "url": "https://pubmed.ncbi.nlm.nih.gov/9603875" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36013-1", "protein_name": "NAD-dependent malic enzyme, mitochondrial", "gene_name": "MAE1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36013", "url": "https://www.uniprot.org/uniprotkb/P36013" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9603875", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Natl. Acad. Sci. U.S.A.", "date": "1993", "authors": "Li Y Y, Yeh E, Hays T, Bloom K", "reference": { "type": "PubMed", "id": "8234262", "url": "https://pubmed.ncbi.nlm.nih.gov/8234262" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36022-1", "protein_name": "Dynein heavy chain, cytoplasmic", "gene_name": "DYN1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36022", "url": "https://www.uniprot.org/uniprotkb/P36022" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8234262", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytoplasmic dynein is required for normal nuclear segregation in yeast.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1993", "authors": "Eshel D, Urrestarazu L A, Vissers S, Jauniaux J C, van Vliet-Reedijk J C, Planta R J, Gibbons I R", "reference": { "type": "PubMed", "id": "8248224", "url": "https://pubmed.ncbi.nlm.nih.gov/8248224" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36022-1", "protein_name": "Dynein heavy chain, cytoplasmic", "gene_name": "DYN1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36022", "url": "https://www.uniprot.org/uniprotkb/P36022" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8248224", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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Cell. Biol.", "date": "2005", "authors": "Courel Ma\u00eft\u00e9, Lallet Sylvie, Camadro Jean-Michel, Blaiseau Pierre-Louis", "reference": { "type": "PubMed", "id": "16024809", "url": "https://pubmed.ncbi.nlm.nih.gov/16024809" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36033-1", "protein_name": "Ferric/cupric reductase transmembrane component 2", "gene_name": "FRE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12473-1", "protein_name": "Ferric reductase transmembrane component 6", "gene_name": "FRE6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08957-1", "protein_name": "Iron-regulated transcriptional activator AFT2", "gene_name": "AFT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32791-1", "protein_name": "Ferric/cupric reductase transmembrane component 1", "gene_name": "FRE1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { 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[] } ] }, { "title": "AFT1: a mediator of iron regulated transcriptional control in Saccharomyces cerevisiae.", "journal": "EMBO J.", "date": "1995", "authors": "Yamaguchi-Iwai Y, Dancis A, Klausner R D", "reference": { "type": "PubMed", "id": "7720713", "url": "https://pubmed.ncbi.nlm.nih.gov/7720713" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36033-1", "protein_name": "Ferric/cupric reductase transmembrane component 2", "gene_name": "FRE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22149-1", "protein_name": "Iron-regulated transcriptional activator AFT1", "gene_name": "AFT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32791-1", "protein_name": "Ferric/cupric reductase transmembrane component 1", "gene_name": "FRE1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36033", "url": 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left telomere of yeast chromosome XI revealed five open reading frames and recent recombination events with the right arms of chromosomes III and V.", "journal": "Yeast", "date": "1994", "authors": "Alexandraki D, Tzermia M", "reference": { "type": "PubMed", "id": "8091865", "url": "https://pubmed.ncbi.nlm.nih.gov/8091865" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36033-1", "protein_name": "Ferric/cupric reductase transmembrane component 2", "gene_name": "FRE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35994-1", "protein_name": "Seripauperin-16", "gene_name": "PAU16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35995-1", "protein_name": "Uncharacterized transcriptional regulatory protein YKL222C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36032-1", "protein_name": "Probable transporter MCH2", "gene_name": "MCH2", "tax_name": "Baker's yeast" } ], "species": [ { "name": 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Cell. Biol.", "date": "1994", "authors": "Georgatsou E, Alexandraki D", "reference": { "type": "PubMed", "id": "8164662", "url": "https://pubmed.ncbi.nlm.nih.gov/8164662" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36033-1", "protein_name": "Ferric/cupric reductase transmembrane component 2", "gene_name": "FRE2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36033", "url": "https://www.uniprot.org/uniprotkb/P36033" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8164662", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Biol. Chem.", "date": "1998", "authors": "Martins L J, Jensen L T, Simon J R, Keller G L, Winge D R, Simons J R", "reference": { "type": "PubMed", "id": "9726978", "url": "https://pubmed.ncbi.nlm.nih.gov/9726978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36033-1", "protein_name": "Ferric/cupric reductase transmembrane component 2", "gene_name": "FRE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53746-1", "protein_name": "Ferric reductase transmembrane component 4", "gene_name": "FRE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08905-1", "protein_name": "Ferric reductase transmembrane component 3", "gene_name": "FRE3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12333-1", "protein_name": "Ferric/cupric reductase transmembrane component 7", "gene_name": "FRE7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12473-1", "protein_name": "Ferric reductase transmembrane component 6", "gene_name": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GYF domain proteomics reveals interaction sites in known and novel target proteins.", "journal": "Mol. Cell. Proteomics", "date": "2005", "authors": "Kofler Michael, Motzny Kathrin, Freund Christian", "reference": { "type": "PubMed", "id": "16120600", "url": "https://pubmed.ncbi.nlm.nih.gov/16120600" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36041-1", "protein_name": "Protein EAP1", "gene_name": "EAP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12186-1", "protein_name": "Branchpoint-bridging protein", "gene_name": "MSL5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02875-1", "protein_name": "SMY2 homolog 2", "gene_name": "SYH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32909-1", "protein_name": "Protein SMY2", "gene_name": "SMY2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36041", "url": "https://www.uniprot.org/uniprotkb/P36041" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16120600", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]