[ { "title": "Saccharomyces cerevisiae possesses two functional homologues of Escherichia coli endonuclease III.", "journal": "Biochemistry", "date": "1998-04-28", "authors": "You H J, Swanson R L, Doetsch P W", "reference": { "type": "PubMed", "id": "9558341", "url": "https://pubmed.ncbi.nlm.nih.gov/9558341" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08214-1", "protein_name": "Endonuclease III homolog 2", "gene_name": "NTG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P31378-1", "protein_name": "Endonuclease III homolog 1", "gene_name": "NTG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08214", "url": "https://www.uniprot.org/uniprotkb/Q08214" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9558341", "abstract": "", 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Doetsch P W, Dizdaroglu M, Boiteux S", "reference": { "type": "PubMed", "id": "9826748", "url": "https://pubmed.ncbi.nlm.nih.gov/9826748" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08214-1", "protein_name": "Endonuclease III homolog 2", "gene_name": "NTG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P31378-1", "protein_name": "Endonuclease III homolog 1", "gene_name": "NTG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08214", "url": "https://www.uniprot.org/uniprotkb/Q08214" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9826748", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Kuras Laurent, Borggrefe Tilman, Kornberg Roger D", "reference": { "type": "PubMed", "id": "14623974", "url": "https://pubmed.ncbi.nlm.nih.gov/14623974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08278-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 7", "gene_name": "MED7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32570-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "SRB6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53114-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 5", "gene_name": "NUT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19263-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 14", "gene_name": "RGR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08278", "url": "https://www.uniprot.org/uniprotkb/Q08278" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14623974", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Sequence analysis of a 12 801 bp fragment of the left arm of yeast chromosome XV containing a putative 6-phosphofructo-2-kinase gene, a gene for a possible glycophospholipid-anchored surface protein and six other open reading frames.", "journal": "Yeast", "date": "1996", "authors": "Aldea M, Piedrafita L, Casas C, Casamayor A, Khalid H, Balcells L, Ari\u00f1o J, Herrero E", "reference": { "type": "PubMed", "id": "8896270", "url": "https://pubmed.ncbi.nlm.nih.gov/8896270" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08278-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 7", "gene_name": "MED7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08270-1", "protein_name": "Uncharacterized protein YOL131W", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08281-1", "protein_name": "Restriction of telomere capping protein 1", "gene_name": "RTC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08271-1", "protein_name": "1,3-beta-glucanosyltransferase GAS4", "gene_name": "GAS4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08280-1", "protein_name": "Bypass of stop codon protein 6", "gene_name": "BSC6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12471-1", "protein_name": "6-phosphofructo-2-kinase 2", "gene_name": "PFK27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08273-1", "protein_name": "RING-box protein HRT1", "gene_name": "HRT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08278", "url": "https://www.uniprot.org/uniprotkb/Q08278" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8896270", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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[] } ] }, { "title": "Sld7, an Sld3-associated protein required for efficient chromosomal DNA replication in budding yeast.", "journal": "The EMBO journal", "date": "2011-05-18", "authors": "Tanaka Tamon, Umemori Toshiko, Endo Shizuko, Muramatsu Sachiko, Kanemaki Masato, Kamimura Yoichiro, Obuse Chikashi, Araki Hiroyuki", "reference": { "type": "PubMed", "id": "21487389", "url": "https://pubmed.ncbi.nlm.nih.gov/21487389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08457-1", "protein_name": "Mitochondrial morphogenesis protein SLD7", "gene_name": "SLD7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53135-1", "protein_name": "DNA replication regulator SLD3", "gene_name": "SLD3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08457", "url": "https://www.uniprot.org/uniprotkb/Q08457" } ], "common_name": "Baker's yeast", 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Separation into two components that are required for both cleavage and polyadenylation of mRNA 3' ends.", "journal": "J. Biol. Chem.", "date": "1996", "authors": "Kessler M M, Zhao J, Moore C L", "reference": { "type": "PubMed", "id": "8900210", "url": "https://pubmed.ncbi.nlm.nih.gov/8900210" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08685-1", "protein_name": "mRNA cleavage and polyadenylation factor CLP1", "gene_name": "CLP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25298-1", "protein_name": "mRNA 3'-end-processing protein RNA14", "gene_name": "RNA14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25299-1", "protein_name": "mRNA 3'-end-processing protein RNA15", "gene_name": "RNA15", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08685", "url": "https://www.uniprot.org/uniprotkb/Q08685" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8900210", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The major yeast poly(A)-binding protein is associated with cleavage factor IA and functions in premessenger RNA 3'-end formation.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Minvielle-Sebastia L, Preker P J, Wiederkehr T, Strahm Y, Keller W", "reference": { "type": "PubMed", "id": "9223284", "url": "https://pubmed.ncbi.nlm.nih.gov/9223284" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08685-1", "protein_name": "mRNA cleavage and polyadenylation factor CLP1", "gene_name": "CLP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25298-1", "protein_name": "mRNA 3'-end-processing protein RNA14", "gene_name": "RNA14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04147-1", "protein_name": "Polyadenylate-binding protein, cytoplasmic and nuclear", "gene_name": "PAB1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08685", "url": "https://www.uniprot.org/uniprotkb/Q08685" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9223284", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-Terminal modifications of the 19S regulatory particle subunits of the yeast proteasome.", "journal": "Archives of biochemistry and biophysics", "date": "2003-01-15", "authors": "Kimura Yayoi, Saeki Yasushi, Yokosawa Hideyoshi, Polevoda Bogdan, Sherman Fred, Hirano Hisashi", "reference": { "type": "PubMed", "id": "12504901", "url": "https://pubmed.ncbi.nlm.nih.gov/12504901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08723-1", "protein_name": "26S proteasome regulatory subunit RPN8", "gene_name": "RPN8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12250-1", "protein_name": "26S proteasome regulatory subunit RPN5", "gene_name": "RPN5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32496-1", "protein_name": "26S proteasome regulatory subunit RPN12", "gene_name": "RPN12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33297-1", "protein_name": "26S proteasome regulatory subunit 6A", "gene_name": "RPT5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33298-1", "protein_name": "26S proteasome regulatory subunit 6B homolog", "gene_name": "RPT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38764-1", "protein_name": "26S proteasome regulatory subunit RPN1", "gene_name": "RPN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38886-1", "protein_name": "26S proteasome regulatory subunit RPN10", "gene_name": "RPN10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40327-1", "protein_name": "26S proteasome regulatory subunit 4 homolog", "gene_name": "RPT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43588-1", "protein_name": "Ubiquitin C-terminal hydrolase RPN11", "gene_name": "RPN11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12377-1", "protein_name": "26S proteasome regulatory subunit RPN6", "gene_name": "RPN6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40016-1", "protein_name": "26S proteasome regulatory subunit RPN3", "gene_name": "RPN3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53549-1", "protein_name": "26S proteasome subunit RPT4", "gene_name": "RPT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04062-1", "protein_name": "26S proteasome regulatory subunit RPN9", "gene_name": "RPN9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32565-1", "protein_name": "26S proteasome regulatory subunit RPN2", "gene_name": "RPN2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33299-1", "protein_name": "26S proteasome regulatory subunit 7 homolog", "gene_name": "RPT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q01939-1", "protein_name": "26S proteasome regulatory subunit 8 homolog", "gene_name": "RPT6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06103-1", "protein_name": "26S proteasome regulatory subunit RPN7", "gene_name": "RPN7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q08723", "url": "https://www.uniprot.org/uniprotkb/Q08723" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12504901", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Co- and post-translational modifications of the 26S proteasome in yeast.", "journal": "Proteomics", "date": "2010-08", "authors": "Kikuchi Julia, Iwafune Yuko, Akiyama Tomoko, Okayama Akiko, Nakamura Hiroki, Arakawa Noriaki, Kimura Yayoi, Hirano Hisashi", "reference": { "type": "PubMed", "id": "20486117", "url": "https://pubmed.ncbi.nlm.nih.gov/20486117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08723-1", "protein_name": "26S proteasome regulatory subunit RPN8", "gene_name": "RPN8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12250-1", "protein_name": "26S proteasome regulatory subunit RPN5", "gene_name": "RPN5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32379-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PUP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33297-1", "protein_name": "26S proteasome regulatory subunit 6A", "gene_name": "RPT5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33298-1", "protein_name": "26S proteasome regulatory 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"protein_name": "26S proteasome regulatory subunit RPN6", "gene_name": "RPN6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40016-1", "protein_name": "26S proteasome regulatory subunit RPN3", "gene_name": "RPN3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53549-1", "protein_name": "26S proteasome subunit RPT4", "gene_name": "RPT4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21242-1", "protein_name": "Probable proteasome subunit alpha type-7", "gene_name": "PRE10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21243-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "SCL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22141-1", "protein_name": "Proteasome subunit beta type-4", "gene_name": "PRE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23639-1", "protein_name": "Proteasome subunit alpha type-2", "gene_name": "PRE8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": 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interaction of Lgl family with SNAREs is critical to their cellular function.", "journal": "Curr. Biol.", "date": "2005", "authors": "Gangar Akanksha, Rossi Guendalina, Andreeva Anna, Hales Robert, Brennwald Patrick", "reference": { "type": "PubMed", "id": "15964280", "url": "https://pubmed.ncbi.nlm.nih.gov/15964280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12038-1", "protein_name": "Exocytosis protein SRO7", "gene_name": "SRO7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40357-1", "protein_name": "Protein transport protein SEC9", "gene_name": "SEC9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19524-1", "protein_name": "Myosin-2", "gene_name": "MYO2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12038", "url": "https://www.uniprot.org/uniprotkb/Q12038" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeast lgl family member Sro7p is an effector of the secretory Rab GTPase Sec4p.", "journal": "The Journal of cell biology", "date": "2006-01-02", "authors": "Grosshans Bianka L, Andreeva Anna, Gangar Akanksha, Niessen Sherry, Yates John R, Brennwald Patrick, Novick Peter", "reference": { "type": "PubMed", "id": "16390997", "url": "https://pubmed.ncbi.nlm.nih.gov/16390997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12038-1", "protein_name": "Exocytosis protein SRO7", "gene_name": "SRO7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07560-1", "protein_name": "Ras-related protein SEC4", "gene_name": "SEC4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12038", "url": "https://www.uniprot.org/uniprotkb/Q12038" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16390997", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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function.", "journal": "Genetics", "date": "1998", "authors": "Kagami M, Toh-e A, Matsui Y", "reference": { "type": "PubMed", "id": "9691031", "url": "https://pubmed.ncbi.nlm.nih.gov/9691031" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12038-1", "protein_name": "Exocytosis protein SRO7", "gene_name": "SRO7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38163-1", "protein_name": "Exocytosis protein SRO77", "gene_name": "SRO77", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12038", "url": "https://www.uniprot.org/uniprotkb/Q12038" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9691031", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"evidence": [ { "database": "UniProtKB", "id": "Q12043", "url": "https://www.uniprot.org/uniprotkb/Q12043" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20016004", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Regulation of the yeast triacylglycerol lipases Tgl4p and Tgl5p by the presence/absence of nonpolar lipids.", "journal": "Mol. Biol. Cell", "date": "2016", "authors": "Klein Isabella, Klug Lisa, Schmidt Claudia, Zandl Martina, Korber Martina, Daum G\u00fcnther, Athenstaedt Karin", "reference": { "type": "PubMed", "id": "27170177", "url": "https://pubmed.ncbi.nlm.nih.gov/27170177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12043-1", "protein_name": "Triacylglycerol lipase 5", "gene_name": "TGL5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36165-1", "protein_name": "Triacylglycerol lipase 4", "gene_name": "TGL4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12043", "url": "https://www.uniprot.org/uniprotkb/Q12043" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.27170177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Supercomplex formation between Mlh1-Mlh3 and Sgs1-Top3 heterocomplexes in meiotic yeast cells.", "journal": "Biochem. 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Cell", "date": "2003", "authors": "Pinsky Benjamin A, Tatsutani Sean Y, Collins Kimberly A, Biggins Sue", "reference": { "type": "PubMed", "id": "14602074", "url": "https://pubmed.ncbi.nlm.nih.gov/14602074" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12143-1", "protein_name": "Kinetochore-associated protein NSL1", "gene_name": "NSL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47149-1", "protein_name": "Kinetochore-associated protein NNF1", "gene_name": "NNF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39731-1", "protein_name": "Kinetochore-associated protein MTW1", "gene_name": "MTW1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40568-1", "protein_name": "Kinetochore-associated protein DSN1", "gene_name": "DSN1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12143", "url": "https://www.uniprot.org/uniprotkb/Q12143" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14602074", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nsl1p is essential for the establishment of bipolarity and the localization of the Dam-Duo complex.", "journal": "The EMBO journal", "date": "2003-12-15", "authors": "Scharfenberger Maren, Ortiz Jennifer, Grau Nicole, Janke Carsten, Schiebel Elmar, Lechner Johannes", "reference": { "type": "PubMed", "id": "14657030", "url": "https://pubmed.ncbi.nlm.nih.gov/14657030" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12143-1", "protein_name": "Kinetochore-associated protein NSL1", "gene_name": "NSL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47149-1", "protein_name": "Kinetochore-associated protein NNF1", "gene_name": "NNF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39731-1", "protein_name": "Kinetochore-associated protein MTW1", "gene_name": "MTW1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40568-1", "protein_name": "Kinetochore-associated protein DSN1", "gene_name": "DSN1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12143", "url": "https://www.uniprot.org/uniprotkb/Q12143" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14657030", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA sequence analysis of a 13 kbp fragment of the left arm of yeast chromosome XV containing seven new open reading frames.", "journal": "Yeast", "date": "1995", "authors": "Casamayor A, Aldea M, Casas C, Herrero E, Gamo F J, Lafuente M J, Gancedo C, Ari\u00f1o J", "reference": { "type": "PubMed", "id": "8553699", "url": "https://pubmed.ncbi.nlm.nih.gov/8553699" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12146-1", "protein_name": "DNA replication complex GINS protein PSF3", "gene_name": "PSF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12517-1", "protein_name": "mRNA-decapping enzyme subunit 1", "gene_name": "DCP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12333-1", "protein_name": "Ferric/cupric reductase transmembrane component 7", "gene_name": "FRE7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12462-1", "protein_name": "Peroxisomal membrane protein PMP27", "gene_name": "PEX11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50875-1", "protein_name": "SAGA complex subunit SPT20", "gene_name": "SPT20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P89105-1", "protein_name": "RNA polymerase-associated protein CTR9", "gene_name": "CTR9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12068-1", "protein_name": "NADPH-dependent methylglyoxal reductase GRE2", "gene_name": "GRE2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12146", "url": "https://www.uniprot.org/uniprotkb/Q12146" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8553699", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p.", "journal": "Molecular and cellular biology", "date": "2000-01", "authors": "Burkard K T, Butler J S", "reference": { "type": "PubMed", "id": "10611239", "url": "https://pubmed.ncbi.nlm.nih.gov/10611239" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12149-1", "protein_name": "Exosome complex exonuclease RRP6", "gene_name": "RRP6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29468-1", "protein_name": "Poly(A) polymerase", "gene_name": "PAP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q01560-1", "protein_name": "Serine/arginine (SR)-type shuttling mRNA binding protein NPL3", "gene_name": "NPL3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10611239", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Contribution of domain structure to the RNA 3' end processing and degradation functions of the nuclear exosome subunit Rrp6p.", "journal": "RNA (New York, N.Y.)", "date": "2003-09", "authors": "Phillips Seasson, Butler J Scott", "reference": { "type": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12149-1", "protein_name": "Exosome complex exonuclease RRP6", "gene_name": "RRP6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 238, "end_pos": 238, "sequence_org": "D", "sequence_mut": "A", "comment": "Temperature-sensitive mutant. Abolishes exonuclease activity and increases accumulation of 5.8S + 30 nt RNA, 5' ETSRNA, U24 + 3 nt RNA and poly(A)+ snoRNAs. No effect on subcellular localization.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 240, "end_pos": 240, "sequence_org": "E", "sequence_mut": "A", "comment": "Temperature-sensitive mutant. Abolishes exonuclease activity and increases accumulation of 5.8S + 30 nt RNA, 5' ETSRNA and U24 + 3 nt RNA.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 296, "end_pos": 296, "sequence_org": "D", "sequence_mut": "A", "comment": "Temperature-sensitive mutant. Abolishes exonuclease activity and increases accumulation of 5.8S + 30 nt RNA, 5' ETSRNA and U24 + 3 nt RNA. No effect on subcellular localization.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 361, "end_pos": 361, "sequence_org": "Y", "sequence_mut": "A", "comment": "Temperature-sensitive mutant. Abolishes exonuclease activity and increases accumulation of 5.8S + 30 nt RNA, 5' ETSRNA and U24 + 3 nt RNA.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 361, "end_pos": 361, "sequence_org": "Y", "sequence_mut": "F", "comment": "Temperature-sensitive mutant. Abolishes exonuclease activity and increases accumulation of 5.8S + 30 nt RNA, 5' ETSRNA and U24 + 3 nt RNA. No effect on subcellular localization.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 365, "end_pos": 365, "sequence_org": "D", "sequence_mut": "A", "comment": "Temperature-sensitive mutant. Abolishes exonuclease activity and increases accumulation of 5.8S + 30 nt RNA, 5' ETSRNA and U24 + 3 nt RNA.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 448, "end_pos": 448, "sequence_org": "W", "sequence_mut": "A", "comment": "No significant effects on growth at different temperatures, in vitro exonuclease activity and processing 5.8S rRNA, U24 snoRNA and ETSRNA.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 449, "end_pos": 449, "sequence_org": "R", "sequence_mut": "A", "comment": "No significant effects on growth at different temperatures and processing 5.8S rRNA, U24 snoRNA and ETSRNA. Reduces exonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 456, "end_pos": 456, "sequence_org": "D", "sequence_mut": "A", "comment": "No significant effects on growth at different temperatures, in vitro exonuclease activity and processing 5.8S rRNA, U24 snoRNA and ETSRNA.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 457, "end_pos": 457, "sequence_org": "D", "sequence_mut": "A", "comment": "No significant effects on growth rates at different temperatures, processing 5' ETSRNA and poly(A)+ snoRNAs, non-significant or moderate defects in 5.8S rRNA processing resulting in accumulation of 5.8S + 30 nt RNA, increased accumulation of extended forms of snR40 snoRNA and U24 + 3 nt snoRNA. Reduces exonuclease activity. No effect on subcellular localization.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "16882719", "url": "https://pubmed.ncbi.nlm.nih.gov/16882719" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 700, "end_pos": 721, "sequence_org": "KKRRFDPSSSDSNGPRAAKKRR", "sequence_mut": "FDPSSSDSNGPRAA", "comment": "Results in cytoplasmic accumulation of the protein. No significant effects on processing 5.8S rRNA, U24 snoRNA and ETSRNA.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" } ], "record_id": "pubmed.12923258", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.", "journal": "Mol. Cell. Biol.", "date": "2003", "authors": "Mitchell Philip, Petfalski Elisabeth, Houalla Rym, Podtelejnikov Alexandre, Mann Matthias, Tollervey David", "reference": { "type": "PubMed", "id": "12972615", "url": "https://pubmed.ncbi.nlm.nih.gov/12972615" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12149-1", "protein_name": "Exosome complex exonuclease RRP6", "gene_name": "RRP6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38792-1", "protein_name": "Exosome complex component RRP4", "gene_name": "RRP4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38801-1", "protein_name": "Exosome complex protein LRP1", "gene_name": "LRP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12972615", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide mRNA surveillance is coupled to mRNA export.", "journal": "Genes & development", "date": "2004-11-01", "authors": "Hieronymus Haley, Yu Michael C, Silver Pamela A", "reference": { "type": "PubMed", "id": "15489286", "url": "https://pubmed.ncbi.nlm.nih.gov/15489286" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12149-1", "protein_name": "Exosome complex exonuclease RRP6", "gene_name": "RRP6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38801-1", "protein_name": "Exosome complex protein LRP1", "gene_name": "LRP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15489286", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-08-08", "authors": "Midtgaard S\u00f8ren F, Assenholt Jannie, Jonstrup Anette Thyssen, Van Lan B, Jensen Torben Heick, Brodersen Ditlev E", "reference": { "type": "PubMed", "id": "16882719", "url": "https://pubmed.ncbi.nlm.nih.gov/16882719" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12149-1", "protein_name": "Exosome complex exonuclease RRP6", "gene_name": "RRP6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 133, "end_pos": 133, "sequence_org": "Q", "sequence_mut": "A", "comment": "No significant effects on growth rates and degradation of 5' ETSRNA, increased accumulation of extended forms of snR40 snoRNA and 5.8S + 30 nt RNA; when associated with A-142.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "16882719", "url": "https://pubmed.ncbi.nlm.nih.gov/16882719" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 142, "end_pos": 142, "sequence_org": "N", "sequence_mut": "A", "comment": "No significant effects on growth rates and degradation of 5' ETSRNA, increased accumulation of extended forms of snR40 snoRNA and 5.8S + 30 nt RNA; when associated with A-133.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "16882719", "url": "https://pubmed.ncbi.nlm.nih.gov/16882719" } ], "uniprot_canonical_ac": "Q12149-1" }, { "start_pos": 457, "end_pos": 457, "sequence_org": "D", "sequence_mut": "A", "comment": "No significant effects on growth rates at different temperatures, processing 5' ETSRNA and poly(A)+ snoRNAs, non-significant or moderate defects in 5.8S rRNA processing resulting in accumulation of 5.8S + 30 nt RNA, increased accumulation of extended forms of snR40 snoRNA and U24 + 3 nt snoRNA. Reduces exonuclease activity. No effect on subcellular localization.", "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" }, { "database": "PubMed", "id": "16882719", "url": "https://pubmed.ncbi.nlm.nih.gov/16882719" }, { "database": "PubMed", "id": "12923258", "url": "https://pubmed.ncbi.nlm.nih.gov/12923258" } ], "uniprot_canonical_ac": "Q12149-1" } ], "record_id": "pubmed.16882719", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nop53p interacts with 5.8S rRNA co-transcriptionally, and regulates processing of pre-rRNA by the exosome.", "journal": "FEBS J.", "date": "2008", "authors": "Granato Daniela C, Machado-Santelli Glaucia M, Oliveira Carla C", "reference": { "type": "PubMed", "id": "18631361", "url": "https://pubmed.ncbi.nlm.nih.gov/18631361" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12149-1", "protein_name": "Exosome complex exonuclease RRP6", "gene_name": "RRP6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36070-1", "protein_name": "RNA polymerase I-specific transcription initiation factor RRN3", "gene_name": "RRN3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12080-1", "protein_name": "Ribosome biogenesis protein NOP53", "gene_name": "NOP53", "tax_name": "Baker's 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"Q12218-1", "protein_name": "Cell wall protein TIR4", "gene_name": "TIR4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12442-1", "protein_name": "ADIPOR-like receptor IZH2", "gene_name": "IZH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20052-1", "protein_name": "PHO85 cyclin PHO80", "gene_name": "PHO80", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12118-1", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein 2", "gene_name": "SGT2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12149", "url": "https://www.uniprot.org/uniprotkb/Q12149" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8896276", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"evidence": [ { "database": "UniProtKB", "id": "Q12159", "url": "https://www.uniprot.org/uniprotkb/Q12159" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15584090", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "YRA1, an essential Saccharomyces cerevisiae gene, encodes a novel nuclear protein with RNA annealing activity.", "journal": "RNA", "date": "1997", "authors": "Portman D S, O'Connor J P, Dreyfuss G", "reference": { "type": "PubMed", "id": "9149233", "url": "https://pubmed.ncbi.nlm.nih.gov/9149233" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12159-1", "protein_name": "RNA annealing protein YRA1", "gene_name": "YRA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12159", "url": "https://www.uniprot.org/uniprotkb/Q12159" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9149233", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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subunit SPC34", "gene_name": "SPC34", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36162-1", "protein_name": "DASH complex subunit DAD2", "gene_name": "DAD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53168-1", "protein_name": "DASH complex subunit DUO1", "gene_name": "DUO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53267-1", "protein_name": "DASH complex subunit DAM1", "gene_name": "DAM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03954-1", "protein_name": "DASH complex subunit SPC19", "gene_name": "SPC19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35734-1", "protein_name": "DASH complex subunit ASK1", "gene_name": "ASK1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12248", "url": "https://www.uniprot.org/uniprotkb/Q12248" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11782438", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The mitotic spindle is required for loading of the DASH complex onto the kinetochore.", "journal": "Genes Dev.", "date": "2002", "authors": "Li Yumei, Bachant Jeff, Alcasabas Annette A, Wang Yanchang, Qin Jun, Elledge Stephen J", "reference": { "type": "PubMed", "id": "11799062", "url": "https://pubmed.ncbi.nlm.nih.gov/11799062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12248-1", "protein_name": "DASH complex subunit DAD1", "gene_name": "DAD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36131-1", "protein_name": "DASH complex subunit SPC34", "gene_name": "SPC34", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36162-1", "protein_name": "DASH complex subunit DAD2", "gene_name": "DAD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03954-1", "protein_name": "DASH complex subunit SPC19", "gene_name": "SPC19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35734-1", "protein_name": "DASH complex subunit ASK1", "gene_name": "ASK1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12248", "url": "https://www.uniprot.org/uniprotkb/Q12248" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11799062", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The yeast DASH complex forms closed rings on microtubules.", "journal": "Nature structural & molecular biology", "date": "2005-02", "authors": "Miranda J J L, De Wulf Peter, Sorger Peter K, Harrison Stephen C", "reference": { "type": "PubMed", "id": "15640796", "url": "https://pubmed.ncbi.nlm.nih.gov/15640796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12248-1", "protein_name": "DASH complex subunit DAD1", "gene_name": "DAD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36131-1", "protein_name": "DASH complex subunit SPC34", "gene_name": "SPC34", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36162-1", "protein_name": "DASH complex subunit DAD2", "gene_name": "DAD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69850-1", "protein_name": "DASH complex subunit DAD3", "gene_name": "DAD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69851-1", "protein_name": "DASH complex subunit DAD4", "gene_name": "DAD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69852-1", "protein_name": "DASH complex subunit HSK3", "gene_name": "HSK3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53168-1", "protein_name": "DASH complex subunit DUO1", "gene_name": "DUO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53267-1", "protein_name": "DASH complex subunit DAM1", "gene_name": "DAM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03954-1", "protein_name": "DASH complex subunit SPC19", "gene_name": "SPC19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35734-1", "protein_name": "DASH complex subunit ASK1", "gene_name": "ASK1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12248", "url": "https://www.uniprot.org/uniprotkb/Q12248" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Formation of a dynamic kinetochore- microtubule interface through assembly of the Dam1 ring complex.", "journal": "Molecular cell", "date": "2005-01-21", "authors": "Westermann Stefan, Avila-Sakar Agustin, Wang Hong-Wei, Niederstrasser Hanspeter, Wong Jonathan, Drubin David G, Nogales Eva, Barnes Georjana", "reference": { "type": "PubMed", "id": "15664196", "url": "https://pubmed.ncbi.nlm.nih.gov/15664196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12248-1", "protein_name": "DASH complex subunit DAD1", "gene_name": "DAD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36131-1", "protein_name": "DASH complex subunit SPC34", "gene_name": "SPC34", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36162-1", "protein_name": "DASH complex subunit DAD2", "gene_name": "DAD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69850-1", "protein_name": "DASH complex subunit DAD3", "gene_name": "DAD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69851-1", "protein_name": "DASH complex subunit DAD4", "gene_name": "DAD4", "tax_name": "Baker's yeast" }, 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Biol.", "date": "2014", "authors": "Aravamudhan Pavithra, Felzer-Kim Isabella, Gurunathan Kaushik, Joglekar Ajit P", "reference": { "type": "PubMed", "id": "24930965", "url": "https://pubmed.ncbi.nlm.nih.gov/24930965" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12248-1", "protein_name": "DASH complex subunit DAD1", "gene_name": "DAD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36131-1", "protein_name": "DASH complex subunit SPC34", "gene_name": "SPC34", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36162-1", "protein_name": "DASH complex subunit DAD2", "gene_name": "DAD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69850-1", "protein_name": "DASH complex subunit DAD3", "gene_name": "DAD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P69851-1", "protein_name": "DASH complex subunit DAD4", "gene_name": "DAD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53267-1", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "SAC1 encodes a regulated lipid phosphoinositide phosphatase, defects in which can be suppressed by the homologous Inp52p and Inp53p phosphatases.", "journal": "The Journal of biological chemistry", "date": "2000-01-14", "authors": "Hughes W E, Woscholski R, Cooke F T, Patrick R S, Dove S K, McDonald N Q, Parker P J", "reference": { "type": "PubMed", "id": "10625610", "url": "https://pubmed.ncbi.nlm.nih.gov/10625610" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12271-1", "protein_name": "Polyphosphatidylinositol phosphatase INP53", "gene_name": "INP53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50942-1", "protein_name": "Polyphosphatidylinositol phosphatase INP52", "gene_name": "INP52", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32368-1", "protein_name": "Phosphatidylinositol-3-phosphatase SAC1", "gene_name": "SAC1", "tax_name": "Baker's yeast" } ], "species": [ { 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[] } ] }, { "title": "Identification and characterization of an essential family of inositol polyphosphate 5-phosphatases (INP51, INP52 and INP53 gene products) in the yeast Saccharomyces cerevisiae.", "journal": "Genetics", "date": "1998-04", "authors": "Stolz L E, Huynh C V, Thorner J, York J D", "reference": { "type": "PubMed", "id": "9560389", "url": "https://pubmed.ncbi.nlm.nih.gov/9560389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12271-1", "protein_name": "Polyphosphatidylinositol phosphatase INP53", "gene_name": "INP53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40559-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase INP51", "gene_name": "INP51", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50942-1", "protein_name": "Polyphosphatidylinositol phosphatase INP52", "gene_name": "INP52", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Synaptojanin family members are implicated in endocytic membrane traffic in yeast.", "journal": "Journal of cell science", "date": "1998-11", "authors": "Singer-Kr\u00fcger B, Nemoto Y, Daniell L, Ferro-Novick S, De Camilli P", "reference": { "type": "PubMed", "id": "9788876", "url": "https://pubmed.ncbi.nlm.nih.gov/9788876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12271-1", "protein_name": "Polyphosphatidylinositol phosphatase INP53", "gene_name": "INP53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40559-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase INP51", "gene_name": "INP51", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50942-1", "protein_name": "Polyphosphatidylinositol phosphatase INP52", "gene_name": "INP52", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { 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