[ { "title": "Isolation and characterization of the THI6 gene encoding a bifunctional thiamin-phosphate pyrophosphorylase/hydroxyethylthiazole kinase from Saccharomyces cerevisiae.", "journal": "J. Biol. Chem.", "date": "1994", "authors": "Nosaka K, Nishimura H, Kawasaki Y, Tsujihara T, Iwashima A", "reference": { "type": "PubMed", "id": "7982968", "url": "https://pubmed.ncbi.nlm.nih.gov/7982968" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41835-1", "protein_name": "Thiamine biosynthetic bifunctional enzyme", "gene_name": "THI6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P41835", "url": "https://www.uniprot.org/uniprotkb/P41835" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7982968", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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"uniprot_canonical_ac": "P33327-1", "protein_name": "NAD-specific glutamate dehydrogenase", "gene_name": "GDH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34226-1", "protein_name": "Chitin synthase regulator SKT5", "gene_name": "SKT5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43596-1", "protein_name": "ISWI one complex protein 3", "gene_name": "IOC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50105-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38276-1", "protein_name": "UPF0303 protein YBR137W", "gene_name": "YBR1013", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50089-1", "protein_name": "Uncharacterized protein YGR237C", "gene_name": "G8581", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53958-1", "protein_name": "Protein BOP3", "gene_name": "BOP3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12398-1", "protein_name": "Probable transcription factor HMS1", "gene_name": "HMS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43124-1", "protein_name": "Non-structural maintenance of chromosome element 4", "gene_name": "NSE4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03772-1", "protein_name": "Pre-mRNA-splicing factor CWC15", "gene_name": "CWC15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04110-1", "protein_name": "Protein ECM11", "gene_name": "ECM11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04461-1", "protein_name": "Transcription factor-like protein EUC1", "gene_name": "EUC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05549-1", "protein_name": "ATP-dependent helicase HRQ1", "gene_name": "HRQ1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06201-1", "protein_name": "Grand meiotic recombination cluster protein 2", "gene_name": "GMC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06488-1", "protein_name": "Chromatin structure-remodeling complex subunit RSC2", "gene_name": "RSC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06629-1", "protein_name": "HDA1 complex subunit 2", "gene_name": "HDA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08747-1", "protein_name": "Upstream activation factor subunit UAF30", "gene_name": "UAF30", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12216-1", "protein_name": "E3 SUMO-protein ligase SIZ2", "gene_name": "NFI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25569-1", "protein_name": "GID complex subunit 7", "gene_name": "GID7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38351-1", "protein_name": "RNA polymerase II-associated protein 1", "gene_name": "PAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38439-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39956-1", "protein_name": "DNA damage-responsive transcriptional repressor RPH1", "gene_name": "RPH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39997-1", "protein_name": "Ectonucleotide pyrophosphatase/phosphodiesterase 2", "gene_name": "NPP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40535-1", "protein_name": "ATF/CREB activator 2", "gene_name": "CST6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q01448-1", "protein_name": "Histone promoter control protein 2", "gene_name": "HPC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07657-1", "protein_name": "Seventh homolog of septin 1", "gene_name": "SHS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08245-1", "protein_name": "Protein ZEO1", "gene_name": "ZEO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CY07-1", "protein_name": "Silenced mating-type protein ALPHA1", "gene_name": "HMLALPHA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26637-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "CDC60", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34228-1", "protein_name": "Putative transcription factor SEF1", "gene_name": "SEF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38809-1", "protein_name": "Uncharacterized protein YHR097C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38904-1", "protein_name": "Protein SPP41", "gene_name": "SPP41", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53628-1", "protein_name": "Transcription regulatory protein SNF12", "gene_name": "SNF12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05024-1", "protein_name": "Protein TRI1", "gene_name": "TRI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06188-1", "protein_name": "NuA3 HAT complex component PDP3", "gene_name": "PDP3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06683-1", "protein_name": "Putative ATP-dependent helicase IRC3", "gene_name": "IRC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08957-1", "protein_name": "Iron-regulated transcriptional activator AFT2", "gene_name": "AFT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12427-1", "protein_name": "Protein STB3", "gene_name": "STB3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14164-1", "protein_name": "ARS-binding factor 1", "gene_name": "ABF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14291-1", "protein_name": "Protein RED1", "gene_name": "RED1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15624-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FRS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19211-1", "protein_name": "Eukaryotic translation initiation factor 5A-2", "gene_name": "ANB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20050-1", "protein_name": "Meiosis-specific protein HOP1", "gene_name": "HOP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20435-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "RPO26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23301-1", "protein_name": "Eukaryotic translation initiation factor 5A-1", "gene_name": "HYP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25364-1", "protein_name": "Forkhead transcription factor HCM1", "gene_name": "HCM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25441-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC4", "gene_name": "RPC53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32457-1", "protein_name": "Cell division control protein 3", "gene_name": "CDC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32591-1", "protein_name": "SWI/SNF complex subunit SWI3", "gene_name": "SWI3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39001-1", "protein_name": "Transcriptional regulatory protein UME6", "gene_name": "UME6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40065-1", "protein_name": "Monopolin complex subunit MAM1", "gene_name": "MAM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42846-1", "protein_name": "Protein KRI1", "gene_name": "KRI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46677-1", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06032-1", "protein_name": "Chromosome stability protein 9", "gene_name": "CST9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O13329-1", "protein_name": "DNA replication fork-blocking protein FOB1", "gene_name": "FOB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P00331-1", "protein_name": "Alcohol dehydrogenase 2", "gene_name": "ADH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02293-1", "protein_name": "Histone H2B.1", "gene_name": "HTB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02294-1", "protein_name": "Histone H2B.2", "gene_name": "HTB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04386-1", "protein_name": "Regulatory protein GAL4", "gene_name": "GAL4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04911-1", "protein_name": "Histone H2A.1", "gene_name": "HTA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04912-1", "protein_name": "Histone H2A.2", "gene_name": "HTA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05750-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06786-1", "protein_name": "DNA topoisomerase 2", "gene_name": "TOP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07244-1", "protein_name": "Bifunctional 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"uniprot_canonical_ac": "P19812-1", "protein_name": "E3 ubiquitin-protein ligase UBR1", "gene_name": "UBR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22289-1", "protein_name": "Cytochrome b-c1 complex subunit 9, mitochondrial", "gene_name": "QCR9", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P41895", "url": "https://www.uniprot.org/uniprotkb/P41895" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9133739", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a developmentally regulated septin and involvement of the septins in spore formation in Saccharomyces cerevisiae.", "journal": "J. Cell Biol.", "date": "1996", "authors": "Fares H, Goetsch L, Pringle J R", "reference": { "type": "PubMed", "id": "8636217", "url": "https://pubmed.ncbi.nlm.nih.gov/8636217" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41901-1", "protein_name": "Sporulation-regulated protein 3", "gene_name": "SPR3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P41901", "url": "https://www.uniprot.org/uniprotkb/P41901" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8636217", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SPR28, a sixth member of the septin gene family in Saccharomyces cerevisiae that is expressed specifically in sporulating cells.", "journal": "Microbiology", "date": "1996", "authors": "De Virgilio C, DeMarini D J, Pringle J R", "reference": { "type": "PubMed", "id": "8885406", "url": "https://pubmed.ncbi.nlm.nih.gov/8885406" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41901-1", "protein_name": "Sporulation-regulated protein 3", "gene_name": "SPR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32458-1", "protein_name": "Cell division control protein 11", "gene_name": "CDC11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04921-1", "protein_name": "Sporulation-regulated protein 28", "gene_name": "SPR28", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04930-1", "protein_name": "Transcription factor CRF1", "gene_name": "CRF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04935-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P41901", "url": "https://www.uniprot.org/uniprotkb/P41901" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8885406", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae.", "journal": "Nature biotechnology", "date": "2002-03", "authors": "Ficarro Scott B, McCleland Mark L, Stukenberg P Todd, Burke Daniel J, Ross Mark M, Shabanowitz Jeffrey, Hunt Donald F, White Forest M", "reference": { "type": "PubMed", "id": "11875433", "url": "https://pubmed.ncbi.nlm.nih.gov/11875433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41911-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, mitochondrial", "gene_name": "GPD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42839-1", "protein_name": "Low affinity vacuolar monovalent cation/H(+) antiporter", "gene_name": "VNX1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46963-1", "protein_name": "CTD kinase subunit gamma", "gene_name": "CTK3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47818-1", "protein_name": "Protein CCC1", "gene_name": "CCC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48563-1", "protein_name": "Protein MON2", "gene_name": "MON2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53540-1", "protein_name": "Spindle pole body component SPC98", "gene_name": "SPC98", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03714-1", "protein_name": "U1 SNP1-associating protein 1", "gene_name": "USA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03957-1", "protein_name": "CTD kinase subunit alpha", "gene_name": "CTK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07528-1", "protein_name": "Autophagy-related protein 20", "gene_name": "ATG20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07533-1", "protein_name": "Cytokinesis protein 3", "gene_name": "CYK3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08723-1", "protein_name": "26S proteasome regulatory subunit RPN8", "gene_name": "RPN8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q92317-1", "protein_name": "Negative cofactor 2 complex subunit beta", "gene_name": "NCB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P30619-1", "protein_name": "Protein transport protein SEC1", "gene_name": "SEC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P31688-1", "protein_name": "Trehalose-phosphatase", "gene_name": "TPS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32356-1", "protein_name": "Cytosolic neutral trehalase", "gene_name": "NTH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32386-1", "protein_name": "ATP-dependent bile acid permease", "gene_name": "YBT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32458-1", "protein_name": "Cell division control protein 11", "gene_name": "CDC11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32499-1", "protein_name": "Nucleoporin NUP2", "gene_name": "NUP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32521-1", "protein_name": "Actin cytoskeleton-regulatory complex protein PAN1", "gene_name": "PAN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32525-1", "protein_name": "Protein ECM25", "gene_name": "ECM25", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32527-1", "protein_name": "Zuotin", "gene_name": "ZUO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32566-1", "protein_name": "Cell wall assembly regulator SMI1", "gene_name": "SMI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32657-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32861-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase", "gene_name": "UGP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32901-1", "protein_name": "Peptide transporter PTR2", "gene_name": "PTR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33302-1", "protein_name": "Pleiotropic ABC efflux transporter of multiple drugs", "gene_name": "PDR5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33338-1", "protein_name": "Protein SLA2", "gene_name": "SLA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33748-1", "protein_name": "Zinc finger protein MSN2", "gene_name": "MSN2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35197-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein GCS1", "gene_name": "GCS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36421-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "TYS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37303-1", "protein_name": "Low specificity L-threonine aldolase", "gene_name": "GLY1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37370-1", "protein_name": "Verprolin", "gene_name": "VRP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38080-1", "protein_name": "Serine/threonine-protein kinase AKL1", "gene_name": "AKL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38085-1", "protein_name": "Valine/tyrosine/tryptophan amino-acid permease 1", "gene_name": "TAT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38426-1", "protein_name": "Trehalose synthase complex regulatory subunit TPS3", "gene_name": "TPS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38427-1", "protein_name": "Trehalose synthase complex regulatory subunit TSL1", "gene_name": "TSL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38691-1", "protein_name": "Serine/threonine-protein kinase KSP1", "gene_name": "KSP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38873-1", "protein_name": "Target of rapamycin complex 1 subunit KOG1", "gene_name": "KOG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39969-1", "protein_name": "BEM1-interacting protein 2", "gene_name": "BOI2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40956-1", "protein_name": "Protein GTS1", "gene_name": "GTS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43583-1", "protein_name": "Proteasome activator BLM10", "gene_name": "BLM10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50278-1", "protein_name": "6-phosphogluconolactonase-like protein 1", "gene_name": "SOL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25351-1", "protein_name": "Major facilitator superfamily domain-containing protein YCR023C", "gene_name": "YCR23C; YCR241", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32047-1", "protein_name": "Protein MLF3", "gene_name": "MLF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43597-1", "protein_name": "Actin-interacting protein 5", "gene_name": "AIP5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03193-1", "protein_name": "Uncharacterized membrane protein YDR090C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03559-1", "protein_name": "Uncharacterized protein YMR295C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04336-1", "protein_name": "Uncharacterized protein YMR196W", "gene_name": "YM9646.09", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05812-1", "protein_name": "Meiotic sister-chromatid recombination protein 3", "gene_name": "MSC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12044-1", "protein_name": "Regulator of calcineurin 2", "gene_name": "RCN2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12117-1", "protein_name": "Protein MRH1", "gene_name": "MRH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12523-1", "protein_name": "WD repeat-containing protein YPL247C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37262-1", "protein_name": "6-phosphogluconolactonase-like protein 2", "gene_name": "SOL2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53890-1", "protein_name": "Bud neck protein 5", "gene_name": "BNI5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53911-1", "protein_name": "Chromatin modification-related protein EAF7", "gene_name": "EAF7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54003-1", "protein_name": "Protein SUR7", "gene_name": "SUR7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00055-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)] 1", "gene_name": "GPD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03306-1", "protein_name": "Serine/threonine-protein kinase PKH3", "gene_name": "PKH3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03640-1", "protein_name": "Tricalbin-3", "gene_name": "TCB3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06385-1", "protein_name": "Vacuolar protein sorting-associated protein 74", "gene_name": "VPS74", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06440-1", "protein_name": "Coronin-like protein", "gene_name": "CRN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07824-1", "protein_name": "Polyamine transporter 1", "gene_name": "TPO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07878-1", "protein_name": "Intermembrane lipid transfer protein VPS13", "gene_name": "VPS13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08548-1", "protein_name": "Lysophospholipid acyltransferase", "gene_name": "ALE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08972-1", "protein_name": "[NU+] prion formation protein 1", "gene_name": "NEW1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12055-1", "protein_name": "Adenylate kinase isoenzyme 6 homolog FAP7", "gene_name": "FAP7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12213-1", "protein_name": "Large ribosomal subunit protein uL30B", "gene_name": "RPL7B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12256-1", "protein_name": "Polyamine transporter 4", "gene_name": "TPO4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12445-1", "protein_name": "Nucleoporin POM34", "gene_name": "POM34", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38250-1", "protein_name": "Increased sodium tolerance protein 2", "gene_name": "IST2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38329-1", "protein_name": "Vacuolar cation-chloride cotransporter 1", "gene_name": "VHC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39720-1", "protein_name": "Oleate-activated transcription factor 1", "gene_name": "OAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08412-1", "protein_name": "Ubiquitin-binding protein CUE5", "gene_name": "CUE5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12186-1", "protein_name": "Branchpoint-bridging protein", "gene_name": "MSL5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12389-1", "protein_name": "ATP-dependent RNA helicase DBP10", "gene_name": "DBP10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16965-1", "protein_name": "ATPase-stabilizing factor 15 kDa protein", "gene_name": "STF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25619-1", "protein_name": "30 kDa heat shock protein", "gene_name": "HSP30", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37304-1", "protein_name": "Protein PAM1", "gene_name": "PAM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38079-1", "protein_name": "Protein YRO2", "gene_name": "YRO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38809-1", "protein_name": "Uncharacterized protein YHR097C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40528-1", "protein_name": "Phosphate exporter SYG1", "gene_name": "SYG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43598-1", "protein_name": "Inhibitor of glycogen debranching 1", "gene_name": "IGD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53283-1", "protein_name": "Polyamine transporter 2", "gene_name": "TPO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53388-1", "protein_name": "Dicarboxylic amino acid permease", "gene_name": "DIP5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53438-1", "protein_name": "Protein SOK2", "gene_name": "SOK2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53898-1", "protein_name": "Protein NSG2", "gene_name": "NSG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04183-1", "protein_name": "Trafficking protein particle complex II-specific subunit 120", "gene_name": "TRS120", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05672-1", "protein_name": "RNA-binding suppressor of PAS kinase protein 1", "gene_name": "RBS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06451-1", "protein_name": "Polyamine transporter 3", "gene_name": "TPO3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07651-1", "protein_name": "SUR7 family protein FMP45", "gene_name": "FMP45", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07653-1", "protein_name": "Protein HBT1", "gene_name": "HBT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08422-1", "protein_name": "AN1-type zinc finger protein TMC1", "gene_name": "TMC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12359-1", "protein_name": "Ammonia transport outward protein 3", "gene_name": "ATO3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9P305-1", "protein_name": "mRNA stability protein IGO2", "gene_name": "IGO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14126-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14164-1", "protein_name": "ARS-binding factor 1", "gene_name": "ABF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14180-1", "protein_name": "Chitin synthase 2", "gene_name": "CHS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14680-1", "protein_name": "Dual specificity protein kinase YAK1", "gene_name": "YAK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15891-1", "protein_name": "Actin-binding protein", "gene_name": "ABP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15992-1", "protein_name": "Heat shock protein 26", "gene_name": "HSP26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16387-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial", "gene_name": "PDA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16521-1", "protein_name": "Elongation factor 3A", "gene_name": "YEF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16862-1", "protein_name": "ATP-dependent 6-phosphofructokinase subunit beta", "gene_name": "PFK2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19657-1", "protein_name": "Plasma membrane ATPase 2", "gene_name": "PMA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20459-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit alpha", "gene_name": "SUI2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21192-1", "protein_name": "Metallothionein expression activator", "gene_name": "ACE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22579-1", "protein_name": "Transcriptional regulatory protein SIN3", "gene_name": "SIN3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23293-1", "protein_name": "Serine/threonine-protein kinase BUR1", "gene_name": "SGV1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23337-1", "protein_name": "Glycogen [starch] synthase isoform 1", "gene_name": "GSY1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23585-1", "protein_name": "High-affinity glucose transporter HXT2", "gene_name": "HXT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P24276-1", "protein_name": "Protein SSD1", "gene_name": "SSD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P24279-1", "protein_name": "DNA replication licensing factor MCM3", "gene_name": "MCM3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25087-1", "protein_name": "Sterol 24-C-methyltransferase ERG6", "gene_name": "ERG6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25358-1", "protein_name": "Fatty acid elongase 2", "gene_name": "ELO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25644-1", "protein_name": "Deadenylation-dependent mRNA-decapping factor PAT1", "gene_name": "PAT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27472-1", "protein_name": "Glycogen [starch] synthase isoform 2", "gene_name": "GSY2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32793-1", "protein_name": "Protein YSC84", "gene_name": "YSC84", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34216-1", "protein_name": "EH domain-containing and endocytosis protein 1", "gene_name": "EDE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34223-1", "protein_name": "UBX domain-containing protein 1", "gene_name": "SHP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38132-1", "protein_name": "DNA replication licensing factor MCM7", "gene_name": "MCM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38431-1", "protein_name": "Eukaryotic translation initiation factor 5", "gene_name": "TIF5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38968-1", "protein_name": "Protein transport protein SEC31", "gene_name": "SEC31", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40484-1", "protein_name": "DBF2 kinase activator protein MOB1", "gene_name": "MOB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47136-1", "protein_name": "Bud site selection protein 4", "gene_name": "BUD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48813-1", "protein_name": "High-affinity glutamine permease", "gene_name": "GNP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53741-1", "protein_name": "UBP3-associated protein BRE5", "gene_name": "BRE5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06631-1", "protein_name": "Protein BFR2", "gene_name": "BFR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12265-1", "protein_name": "Ribose-phosphate pyrophosphokinase 5", "gene_name": "PRS5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "D6VTK4-1", "protein_name": "Pheromone alpha factor receptor", "gene_name": "STE2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P00924-1", "protein_name": "Enolase 1", "gene_name": "ENO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P00925-1", "protein_name": "Enolase 2", "gene_name": "ENO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P01120-1", "protein_name": "Ras-like protein 2", "gene_name": "RAS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02400-1", "protein_name": "Large ribosomal subunit protein P2B", "gene_name": "RPP2B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04456-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL25", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04806-1", "protein_name": "Hexokinase-1", "gene_name": "HXK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04807-1", "protein_name": "Hexokinase-2", "gene_name": "HXK2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04911-1", "protein_name": "Histone H2A.1", "gene_name": "HTA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05030-1", "protein_name": "Plasma membrane ATPase 1", "gene_name": "PMA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05318-1", "protein_name": "Large ribosomal subunit protein P1A", "gene_name": "RPP1A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05737-1", "protein_name": "Large ribosomal subunit protein uL30A", "gene_name": "RPL7A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05759-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS31", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06102-1", "protein_name": "General negative regulator of transcription subunit 3", "gene_name": "NOT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07278-1", "protein_name": "cAMP-dependent protein kinase regulatory subunit", "gene_name": "BCY1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07560-1", "protein_name": "Ras-related protein SEC4", "gene_name": "SEC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P08018-1", "protein_name": "MAP kinase kinase PBS2", "gene_name": "PBS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX38-1", "protein_name": "Small ribosomal subunit protein eS6B", "gene_name": "RPS6B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX53-1", "protein_name": "Large ribosomal subunit protein uL11A", "gene_name": "RPL12A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX54-1", "protein_name": "Large ribosomal subunit protein uL11B", "gene_name": "RPL12B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10823-1", "protein_name": "Guanine nucleotide-binding protein alpha-2 subunit", "gene_name": "GPA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10964-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA190", "gene_name": "RPA190", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11972-1", "protein_name": "Protein SST2", "gene_name": "SST2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22211-1", "protein_name": "Nitrogen permease reactivator protein", "gene_name": "NPR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25302-1", "protein_name": "Regulatory protein SWI4", "gene_name": "SWI4", "tax_name": "Baker's yeast" }, { 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"url": "https://pubmed.ncbi.nlm.nih.gov/27821475" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41911-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, mitochondrial", "gene_name": "GPD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41948-1", "protein_name": "Ammonium transporter MEP2", "gene_name": "MEP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42845-1", "protein_name": "Protein STB1", "gene_name": "STB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47160-1", "protein_name": "Epsin-3", "gene_name": "ENT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48164-1", "protein_name": "Small ribosomal subunit protein eS7B", "gene_name": "RPS7B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02205-1", "protein_name": "Protein MEH1", "gene_name": "MEH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02642-1", "protein_name": "Nascent polypeptide-associated complex subunit beta-1", "gene_name": "EGD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02725-1", "protein_name": "Vacuolar transporter chaperone 3 complex subunit 3", "gene_name": "VTC3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28708-1", "protein_name": "Serine/threonine-protein kinase PRR1", "gene_name": "PRR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32350-1", "protein_name": "Dual specificity protein kinase KNS1", "gene_name": "KNS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32379-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PUP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32566-1", "protein_name": "Cell wall assembly regulator SMI1", "gene_name": "SMI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32861-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase", "gene_name": "UGP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32945-1", "protein_name": "Serine/threonine-protein phosphatase PPQ", "gene_name": "PPQ1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33753-1", "protein_name": "tRNA (uracil(54)-C(5))-methyltransferase", "gene_name": "TRM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34760-1", "protein_name": "Peroxiredoxin TSA1", "gene_name": "TSA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35197-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein GCS1", "gene_name": "GCS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35732-1", "protein_name": "RNA polymerase II degradation factor 1", "gene_name": "DEF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38011-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "ASC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38764-1", "protein_name": "26S proteasome regulatory subunit RPN1", "gene_name": "RPN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40693-1", "protein_name": "Ribosome biogenesis protein RLP7", "gene_name": "RLP7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41832-1", "protein_name": "Protein BNI1", "gene_name": "BNI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46676-1", "protein_name": "Suppressor of mar1-1 protein", "gene_name": "SUM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25351-1", "protein_name": "Major facilitator superfamily domain-containing protein YCR023C", "gene_name": "YCR23C; YCR241", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40157-1", "protein_name": "Vacuolar import and degradation protein 27", "gene_name": "VID27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40361-1", "protein_name": "Inactive deaminase YJL070C", "gene_name": "HRD888; J1095", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46949-1", "protein_name": "Protein FYV8", "gene_name": "FYV8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12515-1", "protein_name": "Protein PAR32", "gene_name": "PAR32", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38082-1", "protein_name": "Probable transcriptional regulator NRG2", "gene_name": "NRG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53860-1", "protein_name": "Phosphatidylinositol transfer protein PDR16", "gene_name": "PDR16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03262-1", "protein_name": "Phosphoribomutase", "gene_name": "PRM15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04958-1", "protein_name": "Lysophospholipase NTE1", "gene_name": "NTE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06488-1", "protein_name": "Chromatin structure-remodeling complex subunit RSC2", "gene_name": "RSC2", "tax_name": "Baker's 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Biol. Chem.", "date": "1993", "authors": "Kopp M, M\u00fcller H, Holzer H", "reference": { "type": "PubMed", "id": "8444853", "url": "https://pubmed.ncbi.nlm.nih.gov/8444853" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41920-1", "protein_name": "Ran-specific GTPase-activating protein 1", "gene_name": "YRB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32356-1", "protein_name": "Cytosolic neutral trehalase", "gene_name": "NTH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P41920", "url": "https://www.uniprot.org/uniprotkb/P41920" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8444853", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics.", "journal": "J. Proteome Res.", "date": "2006", "authors": "Reinders Joerg, Zahedi Ren\u00e9 P, Pfanner Nikolaus, Meisinger Chris, Sickmann Albert", "reference": { "type": "PubMed", "id": "16823961", "url": "https://pubmed.ncbi.nlm.nih.gov/16823961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41921-1", "protein_name": "Glutathione reductase", "gene_name": "GLR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43122-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "QRI7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43616-1", "protein_name": "Cys-Gly metallodipeptidase DUG1", "gene_name": "DUG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47025-1", "protein_name": "Mitochondrial division protein 1", "gene_name": "MDV1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47039-1", "protein_name": "Probable kynurenine--oxoglutarate transaminase BNA3", "gene_name": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A 43.5 kb segment of yeast chromosome XIV, which contains MFA2, MEP2, CAP/SRV2, NAM9, FKB1/FPR1/RBP1, MOM22 and CPT1, predicts an adenosine deaminase gene and 14 new open reading frames.", "journal": "Yeast", "date": "1995", "authors": "Mallet L, Bussereau F, Jacquet M", "reference": { "type": "PubMed", "id": "8619318", "url": "https://pubmed.ncbi.nlm.nih.gov/8619318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P41948-1", "protein_name": "Ammonium transporter MEP2", "gene_name": "MEP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53540-1", "protein_name": "Spindle pole body component SPC98", "gene_name": "SPC98", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53552-1", "protein_name": "THO complex subunit 2", "gene_name": "THO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53909-1", "protein_name": "Adenine 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"Tubulin-specific chaperone B", "gene_name": "ALF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53911-1", "protein_name": "Chromatin modification-related protein EAF7", "gene_name": "EAF7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53915-1", "protein_name": "Nicotinamide riboside kinase", "gene_name": "NRK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53917-1", "protein_name": "Factor arrest protein 11", "gene_name": "FAR11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53919-1", "protein_name": "H/ACA ribonucleoprotein complex non-core subunit NAF1", "gene_name": "NAF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53903-1", "protein_name": "Processing of GAS1 and ALP protein 2", "gene_name": "PGA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53913-1", "protein_name": "Protein FYV6", "gene_name": "FYV6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53916-1", "protein_name": 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"protein_name": "RNA cytidine acetyltransferase", "gene_name": "KRE33", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49334-1", "protein_name": "Mitochondrial import receptor subunit TOM22", "gene_name": "TOM22", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P41948", "url": "https://www.uniprot.org/uniprotkb/P41948" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8619318", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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Genet.", "date": "1998", "authors": "Hamada K, Fukuchi S, Arisawa M, Baba M, Kitada K", "reference": { "type": "PubMed", "id": "9613572", "url": "https://pubmed.ncbi.nlm.nih.gov/9613572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42835-1", "protein_name": "Protein EGT2", "gene_name": "EGT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47033-1", "protein_name": "Cell wall protein PRY3", "gene_name": "PRY3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53301-1", "protein_name": "Congo red hypersensitive protein 1", "gene_name": "CRH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32623-1", "protein_name": "Congo red hypersensitive protein 2", "gene_name": "UTR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12282-1", "protein_name": "Sorulation-regulated protein 2", "gene_name": "SPR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53872-1", "protein_name": "Hydrophilin YNL190W", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequencing analysis of a 24.7 kb fragment of yeast chromosome XIV identifies six known genes, a new member of the hexose transporter family and ten new open reading frames.", "journal": "Yeast", "date": "1995", "authors": "Maftahi M, Nicaud J M, Levesque H, Gaillardin C", "reference": { "type": "PubMed", "id": "7502583", "url": "https://pubmed.ncbi.nlm.nih.gov/7502583" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42839-1", "protein_name": "Low affinity vacuolar monovalent cation/H(+) antiporter", "gene_name": "VNX1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42843-1", "protein_name": "F-box protein SKP2", "gene_name": "SKP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42844-1", "protein_name": "Mitochondrial protein import protein ZIM17", "gene_name": "ZIM17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42845-1", "protein_name": "Protein STB1", "gene_name": "STB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42840-1", "protein_name": "Uncharacterized membrane protein YNL320W", "gene_name": "N0342", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21705-1", "protein_name": "Protein DAL82", "gene_name": "DAL82", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32452-1", "protein_name": "Probable prephenate dehydratase", "gene_name": "PHA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32453-1", "protein_name": "Protein ATP11, mitochondrial", "gene_name": "ATP11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42833-1", "protein_name": "Hexose transporter HXT14", "gene_name": "HXT14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42841-1", "protein_name": "Polyadenylation factor subunit 2", "gene_name": "PFS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42842-1", "protein_name": "Essential for maintenance of the cell wall protein 1", "gene_name": "EMW1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42847-1", "protein_name": "Small ribosomal subunit protein uS11m", "gene_name": "MRPS18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21965-1", "protein_name": "Protein kinase MCK1", "gene_name": "MCK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26754-1", "protein_name": "Replication factor A protein 2", "gene_name": "RFA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42846-1", "protein_name": "Protein KRI1", "gene_name": "KRI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P17260-1", "protein_name": "Protein KRE1", "gene_name": "KRE1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42839", "url": "https://www.uniprot.org/uniprotkb/P42839" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7502583", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional interaction of 13 yeast SCF complexes with a set of yeast E2 enzymes in vitro.", "journal": "Proteins", "date": "2004", "authors": "Kus Bart M, Caldon Catherine E, Andorn-Broza Ronit, Edwards Aled M", "reference": { "type": "PubMed", "id": "14747994", "url": "https://pubmed.ncbi.nlm.nih.gov/14747994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42843-1", "protein_name": "F-box protein SKP2", "gene_name": "SKP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47005-1", "protein_name": "F-box protein DAS1", "gene_name": "DAS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03899-1", "protein_name": "F-box protein YDR131C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04511-1", "protein_name": "Ubiquitin ligase complex F-box protein UFO1", "gene_name": "UFO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05930-1", "protein_name": "Mitochondrial distribution and morphology protein 30", "gene_name": "MDM30", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05947-1", "protein_name": "F-box protein UCC1", "gene_name": "UCC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06640-1", "protein_name": "F-box protein YDR306C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12347-1", "protein_name": "F-box protein HRT3", "gene_name": "HRT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P24814-1", "protein_name": "SCF E3 ubiquitin ligase complex F-box protein GRR1", "gene_name": "GRR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08496-1", "protein_name": "Protein DIA2", "gene_name": "DIA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07834-1", "protein_name": "Cell division control protein 4", "gene_name": "CDC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12018-1", "protein_name": "Cell division control protein 53", "gene_name": "CDC53", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42843", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking.", "journal": "Mol. Cell. Proteomics", "date": "2006", "authors": "Tagwerker Christian, Flick Karin, Cui Meng, Guerrero Cortnie, Dou Yimeng, Auer Bernhard, Baldi Pierre, Huang Lan, Kaiser Peter", "reference": { "type": "PubMed", "id": "16432255", "url": "https://pubmed.ncbi.nlm.nih.gov/16432255" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42843-1", "protein_name": "F-box protein SKP2", "gene_name": "SKP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02293-1", "protein_name": "Histone H2B.1", "gene_name": "HTB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36152-1", "protein_name": "Fe-S cluster assembly protein DRE2", "gene_name": "DRE2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42843", "url": "https://www.uniprot.org/uniprotkb/P42843" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16432255", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes.", "journal": "Genes Dev.", "date": "2006", "authors": "Fleischer Tracey C, Weaver Connie M, McAfee K Jill, Jennings Jennifer L, Link Andrew J", "reference": { "type": "PubMed", "id": "16702403", "url": "https://pubmed.ncbi.nlm.nih.gov/16702403" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42843-1", "protein_name": "F-box protein SKP2", "gene_name": "SKP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53109-1", "protein_name": "Probable metalloreductase AIM14", "gene_name": "AIM14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53297-1", "protein_name": "PAB1-binding protein 1", "gene_name": "PBP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35691-1", "protein_name": "Translationally-controlled tumor protein homolog", "gene_name": "TMA19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46951-1", "protein_name": "Cargo-transport protein YPP1", "gene_name": "YPP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O13587-1", "protein_name": "Uncharacterized protein YPR096C", "gene_name": "P9513.17C", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40323-1", "protein_name": "Uncharacterized protein YPL073C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06177-1", "protein_name": "Translation machinery-associated protein 10", "gene_name": "TMA10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E764-1", "protein_name": "Translation machinery-associated protein 7", "gene_name": "TMA7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47019-1", "protein_name": "Ribosome biogenesis protein ALB1", "gene_name": "ALB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53725-1", "protein_name": "M-phase phosphoprotein 6 homolog", "gene_name": "MPP6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08281-1", "protein_name": "Restriction of telomere capping protein 1", "gene_name": "RTC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12532-1", "protein_name": "Ribosome quality control complex subunit 2", "gene_name": "RQC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38828-1", "protein_name": "Protein LSM12", "gene_name": "LSM12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39729-1", "protein_name": "Ribosome-interacting GTPase 1", "gene_name": "RBG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40462-1", "protein_name": "Protein TMA108", "gene_name": "TMA108", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12276-1", "protein_name": "HMG2-induced ER-remodeling protein 1", "gene_name": "HER1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39526-1", "protein_name": "AP-1 accessory protein LAA1", "gene_name": "LAA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47018-1", "protein_name": "Maintenance of telomere capping protein 1", "gene_name": "MTC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47089-1", "protein_name": "Translation machinery-associated protein 22", "gene_name": "TMA22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P89886-1", "protein_name": "Translation machinery-associated protein 20", "gene_name": "TMA20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02875-1", "protein_name": "SMY2 homolog 2", "gene_name": "SYH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03525-1", "protein_name": "Protein TMA23", "gene_name": "TMA23", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04600-1", "protein_name": "Translation machinery-associated protein 64", "gene_name": "TMA64", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07362-1", "protein_name": "Protein PBP4", "gene_name": "PBP4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12000-1", "protein_name": "Translation machinery-associated protein 46", "gene_name": "TMA46", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12513-1", "protein_name": "Translation machinery-associated protein 17", "gene_name": "TMA17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40563-1", "protein_name": "Altered inheritance of mitochondria protein 21", "gene_name": "AIM21", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08229-1", "protein_name": "Protein NBA1", "gene_name": "NBA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25382-1", "protein_name": "Ribosome assembly protein 4", "gene_name": "RSA4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42843", "url": "https://www.uniprot.org/uniprotkb/P42843" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16702403", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel mechanism regulates H(2) S and SO(2) production in Saccharomyces cerevisiae.", "journal": "Yeast (Chichester, England)", "date": "2011-02", "authors": "Yoshida Satoshi, Imoto Jun, Minato Toshiko, Oouchi Rie, Kamada Yoshiaki, Tomita Masaru, Soga Tomoyoshi, Yoshimoto Hiroyuki", "reference": { "type": "PubMed", "id": "20936605", "url": "https://pubmed.ncbi.nlm.nih.gov/20936605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42843-1", "protein_name": "F-box protein SKP2", "gene_name": "SKP2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42843", "url": "https://www.uniprot.org/uniprotkb/P42843" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20936605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zim17, a novel zinc finger protein essential for protein import into mitochondria.", "journal": "The Journal of biological chemistry", "date": "2004-11-26", "authors": "Burri Lena, Vascotto Katherine, Fredersdorf Steffen, Tiedt Ralph, Hall Michael N, Lithgow Trevor", "reference": { "type": "PubMed", "id": "15383543", "url": "https://pubmed.ncbi.nlm.nih.gov/15383543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42844-1", "protein_name": "Mitochondrial protein import protein ZIM17", "gene_name": "ZIM17", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15383543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel member of yeast mitochondrial Hsp70-associated motor and chaperone proteins that facilitates protein translocation across the inner membrane.", "journal": "FEBS letters", "date": "2005-01-17", "authors": "Yamamoto Hayashi, Momose Takaki, Yatsukawa Yoh-Ichi, Ohshima Chi\u00e9, Ishikawa Daigo, Sato Takehiro, Tamura Yasushi, Ohwa Yukimasa, Endo Toshiya", "reference": { "type": "PubMed", "id": "15642367", "url": "https://pubmed.ncbi.nlm.nih.gov/15642367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42844-1", "protein_name": "Mitochondrial protein import protein ZIM17", "gene_name": "ZIM17", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15642367", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Maintenance of structure and function of mitochondrial Hsp70 chaperones requires the chaperone Hep1.", "journal": "The EMBO journal", "date": "2005-03-09", "authors": "Sichting Martin, Mokranjac Dejana, Azem Abdussalam, Neupert Walter, Hell Kai", "reference": { "type": "PubMed", "id": "15719019", "url": "https://pubmed.ncbi.nlm.nih.gov/15719019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42844-1", "protein_name": "Mitochondrial protein import protein ZIM17", "gene_name": "ZIM17", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15719019", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, 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"url": "https://www.uniprot.org/uniprotkb/P42844" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 106, "end_pos": 107, "sequence_org": "RH", "sequence_mut": "AA", "comment": "In TIM15-2RH; Abolishes interaction with SSC1, and leads to self-aggregation of mtHSP70 and accumulation of uncleaved precursor proteins.", "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" }, { "database": "PubMed", "id": "17571076", "url": "https://pubmed.ncbi.nlm.nih.gov/17571076" } ], "uniprot_canonical_ac": "P42844-1" }, { "start_pos": 111, "end_pos": 111, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes interaction with SSC1, and leads to self-aggregation of mtHSP70 and accumulation of uncleaved precursor proteins.", "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" }, { "database": "PubMed", "id": "17571076", "url": "https://pubmed.ncbi.nlm.nih.gov/17571076" } ], "uniprot_canonical_ac": "P42844-1" }, { "start_pos": 133, "end_pos": 137, "sequence_org": "QVSQD", "sequence_mut": "", "comment": "Temperature sensitive; only partly prevents self-aggregation of mtHSP70 and leads to accumulation of uncleaved precursor proteins at high temperatures.", "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" }, { "database": "PubMed", "id": "17571076", "url": "https://pubmed.ncbi.nlm.nih.gov/17571076" } ], "uniprot_canonical_ac": "P42844-1" }, { "start_pos": 140, "end_pos": 148, "sequence_org": "DLEFEDIPD", "sequence_mut": "ALAFAAIPA", "comment": "In TIM15-5DE; no effect.", "evidence": [ { "database": "UniProtKB", "id": "P42844", "url": "https://www.uniprot.org/uniprotkb/P42844" }, { "database": "PubMed", "id": "17571076", "url": "https://pubmed.ncbi.nlm.nih.gov/17571076" } ], "uniprot_canonical_ac": "P42844-1" 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"protein_name": "Transcription factor CSR2", "gene_name": "CSR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32900-1", "protein_name": "Protein SKG6", "gene_name": "SKG6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34252-1", "protein_name": "DNA replication regulator SLD2", "gene_name": "SLD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39705-1", "protein_name": "Nucleoporin NUP60", "gene_name": "NUP60", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40020-1", "protein_name": "Factor interacting with REF2", "gene_name": "FIR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08206-1", "protein_name": "Uncharacterized protein YOL036W", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36167-1", "protein_name": "Protein SRL3", "gene_name": "SRL3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06266-1", "protein_name": "Protein TOS4", "gene_name": "TOS4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08581-1", "protein_name": "Kinetochore protein SLK19", "gene_name": "SLK19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12416-1", "protein_name": "G1-specific transcriptional repressor WHI5", "gene_name": "WHI5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39685-1", "protein_name": "Nucleoporin POM152", "gene_name": "POM152", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02455-1", "protein_name": "Protein MLP1", "gene_name": "MLP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03790-1", "protein_name": "Nucleoporin NUP53", "gene_name": "NUP53", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05166-1", "protein_name": "Nucleoporin ASM4", "gene_name": "ASM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25579-1", "protein_name": "Laminarase-resistance protein LRE1", "gene_name": "LRE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39734-1", "protein_name": "Protein HPH2", "gene_name": "FRT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40473-1", "protein_name": "Transcriptional activator POG1", "gene_name": "POG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50078-1", "protein_name": "Protein TOS2", "gene_name": "TOS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04383-1", "protein_name": "Protein PLM2", "gene_name": "PLM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04930-1", "protein_name": "Transcription factor CRF1", "gene_name": "CRF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08471-1", "protein_name": "G1-specific transcription factors activator MSA1", "gene_name": "MSA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20676-1", "protein_name": "Nucleoporin NUP1", "gene_name": "NUP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25364-1", "protein_name": "Forkhead transcription factor HCM1", "gene_name": "HCM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26309-1", "protein_name": "APC/C activator protein CDC20", "gene_name": "CDC20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32944-1", "protein_name": "Mitosis inhibitor protein kinase SWE1", "gene_name": "SWE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47136-1", "protein_name": "Bud site selection protein 4", "gene_name": "BUD4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03532-1", "protein_name": "ATP-dependent RNA helicase HAS1", "gene_name": "HAS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03898-1", "protein_name": "Filament protein FIN1", "gene_name": "FIN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06604-1", "protein_name": "F-actin capping regulator BSP1", "gene_name": "BSP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P00546-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDC28", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08229-1", "protein_name": "Protein NBA1", "gene_name": "NBA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42845", "url": "https://www.uniprot.org/uniprotkb/P42845" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14574415", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 34 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the Saccharomyces cerevisiae genes STB1-STB5 encoding Sin3p binding proteins.", "journal": "Mol. Gen. Genet.", "date": "1997", "authors": "Kasten M M, Stillman D J", "reference": { "type": "PubMed", "id": "9393435", "url": "https://pubmed.ncbi.nlm.nih.gov/9393435" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42845-1", "protein_name": "Protein STB1", "gene_name": "STB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36085-1", "protein_name": "Protein STB6", "gene_name": "STB6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46679-1", "protein_name": "Protein STB2", "gene_name": "STB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38699-1", "protein_name": "Protein STB5", "gene_name": "STB5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P50104-1", "protein_name": "Probable transcriptional regulatory protein STB4", "gene_name": "STB4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12427-1", "protein_name": "Protein STB3", "gene_name": "STB3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22579-1", "protein_name": "Transcriptional regulatory protein SIN3", "gene_name": "SIN3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42845", "url": "https://www.uniprot.org/uniprotkb/P42845" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9393435", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An 8.2 kb DNA segment from chromosome XIV carries the RPD3 and PAS8 genes as well as the Saccharomyces cerevisiae homologue of the thiamine-repressed nmt1 gene and a chromosome III-duplicated gene for a putative aryl-alcohol dehydrogenase.", "journal": "Yeast", "date": "1995", "authors": "Van Dyck L, Pascual-Ahuir A, Purnelle B, Goffeau A", "reference": { "type": "PubMed", "id": "8533474", "url": "https://pubmed.ncbi.nlm.nih.gov/8533474" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42884-1", "protein_name": "Putative aryl-alcohol dehydrogenase AAD14", "gene_name": "AAD14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42883-1", "protein_name": "4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase THI12", "gene_name": "THI12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32561-1", "protein_name": "Histone deacetylase RPD3", "gene_name": "RPD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33760-1", "protein_name": "Peroxisomal ATPase PEX6", "gene_name": "PEX6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42884", "url": "https://www.uniprot.org/uniprotkb/P42884" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8533474", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.", "journal": "Genes & development", "date": "2004-10-15", "authors": "Gallagher Jennifer E G, Dunbar David A, Granneman Sander, Mitchell Brianna M, Osheim Yvonne, Beyer Ann L, Baserga Susan J", "reference": { "type": "PubMed", "id": "15489292", "url": "https://pubmed.ncbi.nlm.nih.gov/15489292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42945-1", "protein_name": "U3 small nucleolar RNA-associated protein 10", "gene_name": "UTP10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53276-1", "protein_name": "U3 small nucleolar RNA-associated protein 8", "gene_name": "UTP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02931-1", "protein_name": "NET1-associated nuclear protein 1", "gene_name": "NAN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06679-1", "protein_name": "U3 small nucleolar RNA-associated protein 4", "gene_name": "UTP4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38882-1", "protein_name": "U3 small nucleolar RNA-associated protein 9", "gene_name": "UTP9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04177-1", "protein_name": "U3 small nucleolar RNA-associated protein 5", "gene_name": "UTP5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04305-1", "protein_name": "U3 small nucleolar RNA-associated protein 15", "gene_name": "UTP15", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42945", "url": "https://www.uniprot.org/uniprotkb/P42945" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15489292", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes.", "journal": "Yeast (Chichester, England)", "date": "2006-03", "authors": "Wade Christopher H, Umbarger Mark A, McAlear Michael A", "reference": { "type": "PubMed", "id": "16544271", "url": "https://pubmed.ncbi.nlm.nih.gov/16544271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42945-1", "protein_name": "U3 small nucleolar RNA-associated protein 10", "gene_name": "UTP10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47077-1", "protein_name": "Nucleolar protein 9", "gene_name": "NOP9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34219-1", "protein_name": "Transcriptional regulatory protein TOD6", "gene_name": "TOD6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36080-1", "protein_name": "Ribosomal RNA-processing protein 14", "gene_name": "RRP14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40470-1", "protein_name": "Regulator of rDNA transcription protein 14", "gene_name": "RRT14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36144-1", "protein_name": "Ribosome biogenesis protein UTP30", "gene_name": "UTP30", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47019-1", "protein_name": "Ribosome biogenesis protein ALB1", "gene_name": "ALB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53136-1", "protein_name": "Ribosome biogenesis protein NSA1", "gene_name": "NSA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53188-1", "protein_name": "rRNA-processing protein CGR1", "gene_name": "CGR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40078-1", "protein_name": "Ribosome biogenesis protein NSA2", "gene_name": "NSA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48234-1", "protein_name": "Ribosome biogenesis protein ENP2", "gene_name": "ENP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53335-1", "protein_name": "Protein PXR1", "gene_name": "PXR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12481-1", "protein_name": "rRNA biogenesis protein RRP36", "gene_name": "RRP36", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42945", "url": "https://www.uniprot.org/uniprotkb/P42945" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16544271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A 37.5 kb region of yeast chromosome X includes the SME1, MEF2, GSH1 and CSD3 genes, a TCP-1-related gene, an open reading frame similar to the DAL80 gene, and a tRNA(Arg).", "journal": "Yeast", "date": "1995", "authors": "Rasmussen S W", "reference": { "type": "PubMed", "id": "7483851", "url": "https://pubmed.ncbi.nlm.nih.gov/7483851" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42945-1", "protein_name": "U3 small nucleolar RNA-associated protein 10", "gene_name": "UTP10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42951-1", "protein_name": "Phosphatidylinositol 4-kinase LSB6", "gene_name": "LSB6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47025-1", "protein_name": "Mitochondrial division protein 1", "gene_name": "MDV1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32581-1", "protein_name": "Meiosis induction protein kinase IME2/SME1", "gene_name": "IME2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42949-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM16", "gene_name": "PAM16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42946-1", "protein_name": "Pheromone-regulated membrane protein 10", "gene_name": "PRM10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42947-1", "protein_name": "Uncharacterized protein YJL107C", "gene_name": "J0813", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42948-1", "protein_name": "Histone reader SET4", "gene_name": "SET4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39677-1", "protein_name": "Ribosome-releasing factor 2, mitochondrial", "gene_name": "MEF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42943-1", "protein_name": "T-complex protein 1 subunit eta", "gene_name": "CCT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42944-1", "protein_name": "Protein GZF3", "gene_name": "GZF3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42950-1", "protein_name": "Glucose starvation modulator protein 1", "gene_name": "GSM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40856-1", "protein_name": "SIT4-associating protein SAP185", "gene_name": "SAP185", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40955-1", "protein_name": "Chitin biosynthesis protein CHS6", "gene_name": "CHS6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32477-1", "protein_name": "Glutamate--cysteine ligase", "gene_name": "GSH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42945", "url": "https://www.uniprot.org/uniprotkb/P42945" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7483851", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Biol. Chem.", "date": "2002", "authors": "Han Gil-Soo, Audhya Anjon, Markley Daniel J, Emr Scott D, Carman George M", "reference": { "type": "PubMed", "id": "12361950", "url": "https://pubmed.ncbi.nlm.nih.gov/12361950" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42951-1", "protein_name": "Phosphatidylinositol 4-kinase LSB6", "gene_name": "LSB6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P42951", "url": "https://www.uniprot.org/uniprotkb/P42951" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12361950", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance.", "journal": "Nucleic acids research", "date": "2009", "authors": "Oberto J, Breuil N, Hecker A, Farina F, Brochier-Armanet C, Culetto E, Forterre P", "reference": { "type": "PubMed", "id": "19578062", "url": "https://pubmed.ncbi.nlm.nih.gov/19578062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43122-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "QRI7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43122", "url": "https://www.uniprot.org/uniprotkb/P43122" } ], "common_name": "Baker's 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A.", "journal": "The EMBO journal", "date": "2011-03-02", "authors": "Srinivasan Madhusudhan, Mehta Preeti, Yu Yao, Prugar Evelyn, Koonin Eugene V, Karzai A Wali, Sternglanz Rolf", "reference": { "type": "PubMed", "id": "21183954", "url": "https://pubmed.ncbi.nlm.nih.gov/21183954" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43122-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "QRI7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03705-1", "protein_name": "EKC/KEOPS complex subunit CGI121", "gene_name": "CGI121", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32579-1", "protein_name": "Threonylcarbamoyl-AMP synthase", "gene_name": "SUA5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36132-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "KAE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E833-1", "protein_name": "EKC/KEOPS complex 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"table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification.", "journal": "The EMBO journal", "date": "2011-03-02", "authors": "El Yacoubi Basma, Hatin Isabelle, Deutsch Christopher, Kahveci Tamer, Rousset Jean-Pierre, Iwata-Reuyl Dirk, Murzin Alexey G, de Cr\u00e9cy-Lagard Val\u00e9rie", "reference": { "type": "PubMed", "id": "21285948", "url": "https://pubmed.ncbi.nlm.nih.gov/21285948" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43122-1", "protein_name": "tRNA N6-adenosine 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F", "date": "2014", "authors": "Tominaga Takumi, Kobayashi Kan, Ishii Ryohei, Ishitani Ryuichiro, Nureki Osamu", "reference": { "type": "PubMed", "id": "25084372", "url": "https://pubmed.ncbi.nlm.nih.gov/25084372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43122-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "QRI7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43122", "url": "https://www.uniprot.org/uniprotkb/P43122" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.25084372", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence against the existence of the purported Saccharomyces cerevisiae PKC2 gene.", "journal": "Curr. Biol.", "date": "1994", "authors": "Levin D E, Stevenson W D, Watanabe M", "reference": { "type": "PubMed", "id": "7874498", "url": "https://pubmed.ncbi.nlm.nih.gov/7874498" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43132-1", "protein_name": "COMPASS component BRE2", "gene_name": "BRE2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43132", "url": "https://www.uniprot.org/uniprotkb/P43132" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7874498", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"protein_name": "Small nuclear ribonucleoprotein-associated protein B", "gene_name": "SMB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40089-1", "protein_name": "LSM complex subunit LSM5", "gene_name": "LSM5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06217-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SMD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40204-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SMX2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15116-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm1", "gene_name": "LSM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38203-1", "protein_name": "LSM complex subunit LSM2", "gene_name": "LSM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40070-1", "protein_name": "LSM complex subunit LSM4", "gene_name": "LSM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53905-1", "protein_name": "LSM complex subunit LSM7", "gene_name": "LSM7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10369684", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.", "journal": "EMBO J.", "date": "1999", "authors": "Gottschalk A, Neubauer G, Banroques J, Mann M, L\u00fchrmann R, Fabrizio P", "reference": { "type": "PubMed", "id": "10449419", "url": "https://pubmed.ncbi.nlm.nih.gov/10449419" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": 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559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10490028", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stoichiometry of the Sm proteins in yeast spliceosomal snRNPs supports the heptamer ring model of the core domain.", "journal": "J. Mol. Biol.", "date": "2001", "authors": "Walke S, Bragado-Nilsson E, S\u00e9raphin B, Nagai K", "reference": { "type": "PubMed", "id": "11302706", "url": "https://pubmed.ncbi.nlm.nih.gov/11302706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12330-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SME1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54999-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SMX3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02260-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SMD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40018-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein B", "gene_name": "SMB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06217-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SMD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40204-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SMX2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11302706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Composition and functional characterization of the yeast spliceosomal penta-snRNP.", "journal": "Mol. Cell", "date": "2002", "authors": "Stevens Scott W, Ryan Daniel E, Ge Helen Y, Moore Roger E, Young Mary K, Lee Terry D, Abelson John", "reference": { "type": "PubMed", "id": "11804584", "url": "https://pubmed.ncbi.nlm.nih.gov/11804584" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49704-1", "protein_name": "Pre-mRNA-processing factor 31", "gene_name": "PRP31", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53207-1", "protein_name": "U1 small nuclear ribonucleoprotein component SNU71", "gene_name": "SNU71", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12330-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SME1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32605-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "MUD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12368-1", "protein_name": "23 kDa U4/U6.U5 small nuclear ribonucleoprotein component", "gene_name": "SNU23", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38282-1", "protein_name": "Pre-mRNA-splicing factor SPP381", "gene_name": "SPP381", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54999-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SMX3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02260-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SMD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07508-1", "protein_name": "Protein LUC7", "gene_name": "LUC7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40018-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein B", "gene_name": "SMB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06217-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SMD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40204-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SMX2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40565-1", "protein_name": "U2 snRNP component IST3", "gene_name": "IST3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00916-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa homolog", "gene_name": "SNP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43589-1", "protein_name": "Pre-mRNA-splicing factor SAD1", "gene_name": "SAD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53830-1", "protein_name": "Cold sensitive U2 snRNA suppressor 2", "gene_name": "CUS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00723-1", "protein_name": "Pre-mRNA-splicing factor 38", "gene_name": "PRP38", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03776-1", "protein_name": "U1 small nuclear ribonucleoprotein component PRP42", "gene_name": "PRP42", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03782-1", "protein_name": "56 kDa U1 small nuclear ribonucleoprotein component", "gene_name": "SNU56", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12420-1", "protein_name": "66 kDa U4/U6.U5 small nuclear ribonucleoprotein component", "gene_name": "SNU66", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39990-1", "protein_name": "13 kDa ribonucleoprotein-associated protein", "gene_name": "SNU13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11804584", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.", "journal": "Mol. Cell. Biol.", "date": "2002", "authors": "Ohi MD, Link AJ, Ren L, Jennings JL, McDonald WH, Gould KL", "reference": { "type": "PubMed", "id": "11884590", "url": "https://pubmed.ncbi.nlm.nih.gov/11884590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46947-1", "protein_name": "Pre-mRNA-splicing factor CWC26", "gene_name": "BUD13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49955-1", "protein_name": "U2 snRNP component HSH155", "gene_name": "HSH155", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04693-1", "protein_name": "Pre-mRNA-splicing factor RSE1", "gene_name": "RSE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28004-1", "protein_name": "Pre-mRNA-processing protein 45", "gene_name": "PRP45", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28320-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32639-1", "protein_name": "Pre-mRNA-splicing helicase BRR2", "gene_name": "BRR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33334-1", "protein_name": "Pre-mRNA-splicing factor 8", "gene_name": "PRP8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36048-1", "protein_name": "Pre-mRNA-splicing factor SNU114", "gene_name": "SNU114", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38302-1", "protein_name": "Pre-mRNA-splicing factor NTC20", "gene_name": "NTC20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40968-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38241-1", "protein_name": "Pre-mRNA-splicing factor SLT11", "gene_name": "ECM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52868-1", "protein_name": 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Cell. Biol.", "date": "1991", "authors": "Robinson J S, Graham T R, Emr S D", "reference": { "type": "PubMed", "id": "1840635", "url": "https://pubmed.ncbi.nlm.nih.gov/1840635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27801-1", "protein_name": "Vacuolar membrane protein PEP3", "gene_name": "PEP3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1840635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of PEP3, a gene required for vacuolar biogenesis in Saccharomyces cerevisiae.", "journal": "Mol. Cell. Biol.", "date": "1991", "authors": "Preston R A, Manolson M F, Becherer K, Weidenhammer E, Kirkpatrick D, Wright R, Jones E W", "reference": { "type": "PubMed", "id": "1944264", "url": "https://pubmed.ncbi.nlm.nih.gov/1944264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27801-1", "protein_name": "Vacuolar membrane protein PEP3", "gene_name": "PEP3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1944264", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA cloning of the Sm proteins D2 and D3 from human small nuclear ribonucleoproteins: evidence for a direct D1-D2 interaction.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1994", "authors": "Lehmeier T, Raker V, Hermann H, L\u00fchrmann R", "reference": { "type": "PubMed", "id": "7527560", "url": "https://pubmed.ncbi.nlm.nih.gov/7527560" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Neubauer G, Gottschalk A, Fabrizio P, S\u00e9raphin B, L\u00fchrmann R, Mann M", "reference": { "type": "PubMed", "id": "9012791", "url": "https://pubmed.ncbi.nlm.nih.gov/9012791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12330-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SME1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32605-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "MUD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54999-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SMX3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02260-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SMD1", "tax_name": "Baker's yeast" }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions within the yeast Sm core complex: from proteins to amino acids.", "journal": "Mol. Cell. Biol.", "date": "1998", "authors": "Camasses A, Bragado-Nilsson E, Martin R, S\u00e9raphin B, Bordonn\u00e9 R", "reference": { "type": "PubMed", "id": "9528767", "url": "https://pubmed.ncbi.nlm.nih.gov/9528767" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43321-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SMD3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12330-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SME1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54999-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SMX3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02260-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SMD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40018-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein B", "gene_name": "SMB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06217-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SMD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40204-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SMX2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43321", "url": "https://www.uniprot.org/uniprotkb/P43321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9528767", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reciprocal regulation of anaerobic and aerobic cell wall mannoprotein gene expression in Saccharomyces cerevisiae.", "journal": "J. Bacteriol.", "date": "2001", "authors": "Abramova N, Sertil O, Mehta S, Lowry C V", "reference": { "type": "PubMed", "id": "11292809", "url": "https://pubmed.ncbi.nlm.nih.gov/11292809" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43497-1", "protein_name": "Cell wall protein CWP2", "gene_name": "CWP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47178-1", "protein_name": "Cell wall protein DAN1", "gene_name": "DAN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28319-1", "protein_name": "Cell wall protein CWP1", "gene_name": "CWP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38155-1", "protein_name": "Seripauperin-24", "gene_name": "PAU24", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33890-1", "protein_name": "Cold shock-induced protein TIR2", "gene_name": "TIR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05958-1", "protein_name": "Sterol regulatory element-binding protein 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"Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43497", "url": "https://www.uniprot.org/uniprotkb/P43497" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11292809", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The omega-site sequence of glycosylphosphatidylinositol-anchored proteins in Saccharomyces cerevisiae can determine distribution between the membrane and the cell wall.", "journal": "Mol. Microbiol.", "date": "2003", "authors": "Frieman Matthew B, Cormack Brendan P", "reference": { "type": "PubMed", "id": "14617149", "url": "https://pubmed.ncbi.nlm.nih.gov/14617149" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43497-1", "protein_name": "Cell wall protein CWP2", "gene_name": "CWP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32329-1", "protein_name": "Aspartic proteinase 3", "gene_name": "YPS1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P43497", "url": "https://www.uniprot.org/uniprotkb/P43497" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14617149", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]