[ { "title": "Analysis of the RNA binding specificity of the human tap protein, a constitutive transport element-specific nuclear RNA export factor.", "journal": "Virology", "date": "1999", "authors": "Kang Y, Bogerd HP, Yang J, Cullen BR", "reference": { "type": "PubMed", "id": "10489353", "url": "https://pubmed.ncbi.nlm.nih.gov/10489353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10489353", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The C-terminal domain of TAP interacts with the nuclear pore complex and promotes export of specific CTE-bearing RNA substrates.", "journal": "RNA (New York, N.Y.)", "date": "2000", "authors": "Bachi A, Braun IC, Rodrigues JP, Pante N, Ribbeck K, von Kobbe C, Kutay U, Wilm M, Gorlich D, Carmo-Fonseca M, Izaurralde E", "reference": { "type": "PubMed", "id": "10668806", "url": "https://pubmed.ncbi.nlm.nih.gov/10668806" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUJ2-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 1", "gene_name": "HNRNPUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10668806", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complex protein interactions within the human polyadenylation machinery identify a novel component.", "journal": "Molecular and cellular biology", "date": "2000", "authors": "Takagaki Y, Manley JL", "reference": { "type": "PubMed", "id": "10669729", "url": "https://pubmed.ncbi.nlm.nih.gov/10669729" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10669729", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 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Cell. Biol.", "date": "2000", "authors": "Barnard DC, Patton JG", "reference": { "type": "PubMed", "id": "10757789", "url": "https://pubmed.ncbi.nlm.nih.gov/10757789" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JKL7-1", "protein_name": "Splicing regulatory glutamine/lysine-rich protein 1", "gene_name": "Srek1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ 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"Functional association of U2 snRNP with the ATP-independent spliceosomal complex E.", "journal": "Molecular cell", "date": "2000", "authors": "Das R, Zhou Z, Reed R", "reference": { "type": "PubMed", "id": "10882114", "url": "https://pubmed.ncbi.nlm.nih.gov/10882114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": 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"Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10882114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans.", "journal": "Nature", "date": "2000", "authors": "Zhou Z, Luo MJ, Straesser K, Katahira J, Hurt E, Reed R", "reference": { "type": "PubMed", "id": "11014198", "url": "https://pubmed.ncbi.nlm.nih.gov/11014198" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11014198", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 240 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors.", "journal": "The EMBO journal", "date": "2000", "authors": "de Vries H, Ruegsegger U, Hubner W, Friedlein A, Langen H, Keller W", "reference": { "type": "PubMed", "id": "11060040", "url": "https://pubmed.ncbi.nlm.nih.gov/11060040" }, 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"gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11060040", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture.", "journal": "Molecular and cellular biology", "date": "2000", "authors": "Herold A, Suyama M, Rodrigues JP, Braun IC, Kutay U, Carmo-Fonseca M, Bork P, Izaurralde E", "reference": { "type": "PubMed", "id": "11073998", "url": "https://pubmed.ncbi.nlm.nih.gov/11073998" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": 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"NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4D5-1", "protein_name": "Nuclear RNA export factor 3", "gene_name": "NXF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ8-1", "protein_name": "NTF2-related export protein 2", "gene_name": "NXT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 598, "end_pos": 598, "sequence_org": "E", "sequence_mut": "A", "comment": "Has no effect on FG-nucleoporin binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZY0", "url": "https://www.uniprot.org/uniprotkb/Q9GZY0" }, { "database": "PubMed", "id": "11073998", "url": 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"referenced_proteins", "table_stats": [ { "field": "total", "count": 73 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry.", "journal": "The EMBO journal", "date": "2000", "authors": "Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI", "reference": { "type": "PubMed", "id": "11101529", "url": "https://pubmed.ncbi.nlm.nih.gov/11101529" }, "referenced_glycans": [], "referenced_proteins": [ 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"uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", 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division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11101529", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 205 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The 100-kda U5 snRNP protein (hPrp28p) contacts the 5' splice site through its ATPase site.", "journal": "RNA (New York, N.Y.)", "date": "2001", "authors": "Ismaili N, Sha M, Gustafson EH, Konarska MM", "reference": { "type": "PubMed", "id": "11233976", "url": "https://pubmed.ncbi.nlm.nih.gov/11233976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11233976", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins.", "journal": "EMBO reports", "date": "2000", "authors": "Suyama M, Doerks T, Braun IC, Sattler M, Izaurralde E, Bork P", "reference": { "type": "PubMed", "id": "11256625", "url": "https://pubmed.ncbi.nlm.nih.gov/11256625" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11256625", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overexpression of TAP/p15 heterodimers bypasses nuclear retention and stimulates nuclear mRNA export.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Braun IC, Herold A, Rode M, Conti E, Izaurralde E", "reference": { "type": "PubMed", "id": "11259411", "url": "https://pubmed.ncbi.nlm.nih.gov/11259411" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11259411", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NXT1 (p15) is a crucial cellular cofactor in TAP-dependent export of intron-containing RNA in mammalian cells.", "journal": "Molecular and cellular biology", "date": "2001", "authors": "Guzik BW, Levesque L, Prasad S, Bor YC, Black BE, Paschal BM, Rekosh D, Hammarskjold ML", "reference": { "type": "PubMed", "id": "11259602", "url": "https://pubmed.ncbi.nlm.nih.gov/11259602" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11259602", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functions of SR proteins in the U12-dependent AT-AC pre-mRNA splicing pathway.", "journal": "RNA (New York, N.Y.)", "date": "2001", "authors": "Hastings ML, Krainer AR", "reference": { "type": "PubMed", "id": "11333026", "url": "https://pubmed.ncbi.nlm.nih.gov/11333026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDW3-1", "protein_name": "Zinc finger matrin-type protein 5", "gene_name": "ZMAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15696-1", "protein_name": "U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2", "gene_name": "ZRSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV90-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 25 kDa protein", "gene_name": "SNRNP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IEG0-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 48 kDa protein", "gene_name": "SNRNP48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16560-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "gene_name": "SNRNP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8D1-1", "protein_name": "Programmed cell death protein 7", "gene_name": "PDCD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LT9-1", "protein_name": "RNA-binding region-containing protein 3", "gene_name": "RNPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBF4-1", "protein_name": "Zinc finger CCHC-type and RNA-binding motif-containing protein 1", "gene_name": "ZCRB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11333026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA export mediated by tap involves NXT1-dependent interactions with the nuclear pore complex.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Levesque L, Guzik B, Guan T, Coyle J, Black BE, Rekosh D, Hammarskjold ML, Paschal BM", "reference": { "type": "PubMed", "id": "11579093", "url": "https://pubmed.ncbi.nlm.nih.gov/11579093" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11579093", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Splicing-related catalysis by protein-free snRNAs.", "journal": "Nature", "date": "2001", "authors": "Valadkhan S, Manley JL", "reference": { "type": "PubMed", "id": "11607023", "url": "https://pubmed.ncbi.nlm.nih.gov/11607023" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDW3-1", "protein_name": "Zinc finger matrin-type protein 5", "gene_name": "ZMAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15696-1", "protein_name": "U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2", "gene_name": "ZRSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV90-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 25 kDa protein", "gene_name": "SNRNP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IEG0-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 48 kDa protein", "gene_name": "SNRNP48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16560-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "gene_name": "SNRNP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8D1-1", "protein_name": "Programmed cell death protein 7", "gene_name": "PDCD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LT9-1", "protein_name": "RNA-binding region-containing protein 3", "gene_name": "RNPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBF4-1", "protein_name": "Zinc finger CCHC-type and RNA-binding motif-containing protein 1", "gene_name": "ZCRB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11607023", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Formation of Tap/NXT1 heterodimers activates Tap-dependent nuclear mRNA export by enhancing recruitment to nuclear pore complexes.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Wiegand HL, Coburn GA, Zeng Y, Kang Y, Bogerd HP, Cullen BR", "reference": { "type": "PubMed", "id": "11739738", "url": "https://pubmed.ncbi.nlm.nih.gov/11739738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11739738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complex formation between Tap and p15 affects binding to FG-repeat nucleoporins and nucleocytoplasmic shuttling.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Katahira J, Straesser K, Saiwaki T, Yoneda Y, Hurt E", "reference": { "type": "PubMed", "id": "11756420", "url": "https://pubmed.ncbi.nlm.nih.gov/11756420" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11756420", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TREX is a conserved complex coupling transcription with messenger RNA export.", "journal": "Nature", "date": "2002", "authors": "Strasser K, Masuda S, Mason P, Pfannstiel J, Oppizzi M, Rodriguez-Navarro S, Rondon AG, Aguilera A, Struhl K, Reed R, Hurt E", "reference": { "type": "PubMed", "id": "11979277", "url": "https://pubmed.ncbi.nlm.nih.gov/11979277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53552-1", "protein_name": "THO complex subunit 2", "gene_name": "THO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12159-1", "protein_name": "RNA annealing protein YRA1", "gene_name": "YRA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O13539-1", "protein_name": "THO complex subunit THP2", "gene_name": "THP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33441-1", "protein_name": "THO complex subunit MFT1", "gene_name": "MFT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07478-1", "protein_name": "ATP-dependent RNA helicase SUB2", "gene_name": "SUB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53851-1", "protein_name": "Protein TEX1", "gene_name": "TEX1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17629-1", "protein_name": "THO complex subunit HPR1", "gene_name": "HPR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11979277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 64 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.", "journal": "RNA (New York, N.Y.)", "date": "2002", "authors": "Jurica MS, Licklider LJ, Gygi SR, Grigorieff N, Moore MJ", "reference": { "type": "PubMed", "id": "11991638", "url": "https://pubmed.ncbi.nlm.nih.gov/11991638" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": 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"protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DF8-1", "protein_name": "Splicing factor ESS-2 homolog", "gene_name": "ESS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRX9-1", "protein_name": "WD repeat domain-containing protein 83", "gene_name": "WDR83", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60506-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein Q", "gene_name": "SYNCRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14331-1", "protein_name": "Protein FRG1", "gene_name": "FRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NZY4-1", "protein_name": "Zinc finger CCHC domain-containing protein 8", "gene_name": "ZCCHC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11991638", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 211 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling.", "journal": "The EMBO journal", "date": "2002", "authors": "Lejeune F, Ishigaki Y, Li X, Maquat LE", "reference": { "type": "PubMed", "id": "12093754", "url": "https://pubmed.ncbi.nlm.nih.gov/12093754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99JX7-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "Nxf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12093754", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Large-scale proteomic analysis of the human spliceosome.", "journal": "Genome research", "date": "2002", "authors": "Rappsilber J, Ryder U, Lamond AI, Mann M", "reference": { "type": "PubMed", "id": "12176931", "url": "https://pubmed.ncbi.nlm.nih.gov/12176931" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AE4-1", "protein_name": "Far upstream element-binding protein 1", "gene_name": "FUBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02040-1", "protein_name": "A-kinase anchor protein 17A", "gene_name": "AKAP17A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXA9-1", "protein_name": "Splicing regulatory glutamine/lysine-rich protein 1", "gene_name": "SREK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12176931", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 207 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome.", "journal": "Science (New York, N.Y.)", "date": "2002", "authors": "Makarov EM, Makarova OV, Urlaub H, Gentzel M, Will CL, Wilm M, Luhrmann R", "reference": { "type": "PubMed", "id": "12411573", "url": "https://pubmed.ncbi.nlm.nih.gov/12411573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12411573", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "5' exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly.", "journal": "Genes & development", "date": "2002", "authors": "Reichert VL, Le Hir H, Jurica MS, Moore MJ", "reference": { "type": "PubMed", "id": "12414731", "url": "https://pubmed.ncbi.nlm.nih.gov/12414731" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B 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"gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12414731", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2002", "authors": "Hartmuth K, Urlaub H, Vornlocher HP, Will CL, Gentzel M, Wilm M, Luhrmann R", "reference": { "type": "PubMed", "id": "12477934", "url": "https://pubmed.ncbi.nlm.nih.gov/12477934" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12477934", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SRp55 is a regulator of calcitonin/CGRP alternative RNA splicing.", "journal": "Biochemistry", "date": "2003", "authors": "Tran Q, Roesser JR", "reference": { "type": "PubMed", "id": "12549914", "url": "https://pubmed.ncbi.nlm.nih.gov/12549914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3TWW8-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "Srsf6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "G3V6S8-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "Srsf6", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12549914", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular evidence that the eukaryotic THO/TREX complex is required for efficient transcription elongation.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Rondon AG, Jimeno S, Garcia-Rubio M, Aguilera A", "reference": { "type": "PubMed", "id": "12871933", "url": "https://pubmed.ncbi.nlm.nih.gov/12871933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53552-1", "protein_name": "THO complex subunit 2", "gene_name": "THO2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O13539-1", "protein_name": "THO complex subunit THP2", "gene_name": "THP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33441-1", "protein_name": "THO complex subunit MFT1", "gene_name": "MFT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07478-1", "protein_name": "ATP-dependent RNA helicase SUB2", "gene_name": "SUB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17629-1", "protein_name": "THO complex subunit HPR1", "gene_name": "HPR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12871933", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 62 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A simple whole cell lysate system for in vitro splicing reveals a stepwise assembly of the exon-exon junction complex.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Kataoka N, Dreyfuss G", "reference": { "type": "PubMed", "id": "14625303", "url": "https://pubmed.ncbi.nlm.nih.gov/14625303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", 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subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14625303", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA.", "journal": "The EMBO journal", "date": "2004", "authors": "Xu YZ, Newnham CM, Kameoka S, Huang T, Konarska MM, Query CC", "reference": { "type": "PubMed", "id": "14713954", "url": "https://pubmed.ncbi.nlm.nih.gov/14713954" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14713954", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase.", "journal": "The EMBO journal", "date": "2004", "authors": "Kaufmann I, Martin G, Friedlein A, Langen H, Keller W", "reference": { "type": "PubMed", "id": "14749727", "url": "https://pubmed.ncbi.nlm.nih.gov/14749727" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": 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"protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14749727", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors.", "journal": "Journal of neurochemistry", "date": "2004", "authors": "Wang J, Gao QS, Wang Y, Lafyatis R, Stamm S, Andreadis A", "reference": { "type": "PubMed", "id": "15009664", "url": "https://pubmed.ncbi.nlm.nih.gov/15009664" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SZQ8-1", "protein_name": "CUGBP Elav-like family member 3", "gene_name": "CELF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZC1-1", "protein_name": "CUGBP Elav-like family member 4", "gene_name": "CELF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4V898-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "Rbmx", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "D3ZTQ1-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "Sfswap", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15009664", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.", "journal": "RNA (New York, N.Y.)", "date": "2004-04", "authors": "Ryan Kevin, Calvo Olga, Manley James L", "reference": { "type": "PubMed", "id": "15037765", "url": "https://pubmed.ncbi.nlm.nih.gov/15037765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06224-1", "protein_name": "Endoribonuclease YSH1", "gene_name": "YSH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": 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"gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": 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"gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.", "journal": "Nature", "date": "2004", "authors": "West S, Gromak N, Proudfoot NJ", "reference": { "type": "PubMed", "id": "15565158", "url": "https://pubmed.ncbi.nlm.nih.gov/15565158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15565158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SR proteins: a conserved family of pre-mRNA splicing factors.", "journal": "Genes Dev.", "date": "1992", "authors": "Zahler A M, Lane W S, Stolk J A, Roth M B", "reference": { "type": "PubMed", "id": "1577277", "url": "https://pubmed.ncbi.nlm.nih.gov/1577277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1577277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Recruitment of the human TREX complex to mRNA during splicing.", "journal": "Genes & development", "date": "2005", "authors": "Masuda S, Das R, Cheng H, Hurt E, Dorman N, Reed R", "reference": { "type": "PubMed", "id": "15998806", "url": "https://pubmed.ncbi.nlm.nih.gov/15998806" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15998806", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in tap uncouple RNA export activity from translocation through the nuclear pore complex.", "journal": "Molecular biology of the cell", "date": "2006", "authors": "Levesque L, Bor YC, Matzat LH, Jin L, Berberoglu S, Rekosh D, Hammarskjold ML, Paschal BM", "reference": { "type": "PubMed", "id": "16314397", "url": "https://pubmed.ncbi.nlm.nih.gov/16314397" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16314397", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core.", "journal": "RNA (New York, N.Y.)", "date": "2005", "authors": "Tange TO, Shibuya T, Jurica MS, Moore MJ", "reference": { "type": "PubMed", "id": "16314458", "url": "https://pubmed.ncbi.nlm.nih.gov/16314458" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16314458", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions.", "journal": "Molecular and cellular biology", "date": "2006", "authors": "Deckert J, Hartmuth K, Boehringer D, Behzadnia N, Will CL, Kastner B, Stark H, Urlaub H, Luhrmann R", "reference": { "type": "PubMed", "id": "16809785", "url": "https://pubmed.ncbi.nlm.nih.gov/16809785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16809785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The solution structure of REF2-I reveals interdomain interactions and regions involved in binding mRNA export factors and RNA.", "journal": "RNA (New York, N.Y.)", "date": "2006", "authors": "Golovanov AP, Hautbergue GM, Tintaru AM, Lian LY, Wilson SA", "reference": { "type": "PubMed", "id": "17000901", "url": "https://pubmed.ncbi.nlm.nih.gov/17000901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JJW6-1", "protein_name": "Aly/REF export factor 2", "gene_name": "Alyref2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17000901", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment.", "journal": "RNA (New York, N.Y.)", "date": "2007", "authors": "Merz C, Urlaub H, Will CL, Luhrmann R", "reference": { "type": "PubMed", "id": "17095540", "url": "https://pubmed.ncbi.nlm.nih.gov/17095540" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W1-1", "protein_name": "Thyroid hormone receptor-associated protein 3", "gene_name": "THRAP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00571-1", "protein_name": "ATP-dependent RNA helicase DDX3X", "gene_name": "DDX3X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17095540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 206 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease.", "journal": "Nature", "date": "2006", "authors": "Mandel CR, Kaneko S, Zhang H, Gebauer D, Vethantham V, Manley JL, Tong L", "reference": { "type": "PubMed", "id": "17128255", "url": "https://pubmed.ncbi.nlm.nih.gov/17128255" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12102-1", "protein_name": "Cleavage factor two protein 2", "gene_name": "CFT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 75, "end_pos": 76, "sequence_org": "DH", "sequence_mut": "KA", "comment": "Loss of histone 3'-end processing.", "evidence": [ { "database": "UniProtKB", "id": "Q9UKF6", "url": "https://www.uniprot.org/uniprotkb/Q9UKF6" }, { "database": "PubMed", "id": "17128255", "url": "https://pubmed.ncbi.nlm.nih.gov/17128255" } ], "uniprot_canonical_ac": "Q9UKF6-1" } ], "record_id": "pubmed.17128255", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 127 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human mRNA export machinery recruited to the 5' end of mRNA.", "journal": "Cell", "date": "2006", "authors": "Cheng H, Dufu K, Lee CS, Hsu JL, Dias A, Reed R", "reference": { "type": "PubMed", "id": "17190602", "url": "https://pubmed.ncbi.nlm.nih.gov/17190602" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17190602", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17332742", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Splicing remodels messenger ribonucleoprotein architecture via eIF4A3-dependent and -independent recruitment of exon junction complex components.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007", "authors": "Zhang Z, Krainer AR", "reference": { "type": "PubMed", "id": "17606899", "url": "https://pubmed.ncbi.nlm.nih.gov/17606899" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17606899", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing.", "journal": "RNA (New York, N.Y.)", "date": "2007", "authors": "Valadkhan S, Mohammadi A, Wachtel C, Manley JL", "reference": { "type": "PubMed", "id": "17940139", "url": "https://pubmed.ncbi.nlm.nih.gov/17940139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDW3-1", "protein_name": "Zinc finger matrin-type protein 5", "gene_name": "ZMAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15696-1", "protein_name": "U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2", "gene_name": "ZRSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": 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"protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IEG0-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 48 kDa protein", "gene_name": "SNRNP48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16560-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "gene_name": "SNRNP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8D1-1", "protein_name": "Programmed cell death protein 7", "gene_name": "PDCD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LT9-1", "protein_name": "RNA-binding region-containing protein 3", "gene_name": "RNPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBF4-1", "protein_name": "Zinc finger CCHC-type and RNA-binding motif-containing protein 1", "gene_name": "ZCRB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17940139", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ATP-dependent recruitment of export factor Aly/REF onto intronless mRNAs by RNA helicase UAP56.", "journal": "Molecular and cellular biology", "date": "2008", "authors": "Taniguchi I, Ohno M", "reference": { "type": "PubMed", "id": "17984224", "url": "https://pubmed.ncbi.nlm.nih.gov/17984224" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": 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"P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 95, "end_pos": 95, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of ATPase and helicase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q13838", "url": "https://www.uniprot.org/uniprotkb/Q13838" }, { "database": "PubMed", "id": "17562711", "url": "https://pubmed.ncbi.nlm.nih.gov/17562711" }, { "database": "PubMed", "id": "17984224", "url": "https://pubmed.ncbi.nlm.nih.gov/17984224" } ], "uniprot_canonical_ac": "Q13838-1" } ], "record_id": "pubmed.17984224", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs.", "journal": "Nature", "date": "2008", "authors": "Mellman DL, Gonzales ML, Song C, Barlow CA, Wang P, Kendziorski C, Anderson RA", "reference": { "type": "PubMed", "id": "18288197", "url": "https://pubmed.ncbi.nlm.nih.gov/18288197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { 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8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed 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"Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", 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"gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 216, "end_pos": 216, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes adenylyltransferase activity; when associated with A-218.", "evidence": [ { "database": "UniProtKB", "id": "Q9H6E5", "url": "https://www.uniprot.org/uniprotkb/Q9H6E5" }, { "database": "PubMed", "id": "18288197", "url": "https://pubmed.ncbi.nlm.nih.gov/18288197" } ], "uniprot_canonical_ac": "Q9H6E5-1" }, { "start_pos": 218, "end_pos": 218, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes adenylyltransferase activity; when associated with A-216.", "evidence": [ { "database": "UniProtKB", "id": "Q9H6E5", "url": "https://www.uniprot.org/uniprotkb/Q9H6E5" }, { "database": "PubMed", "id": "18288197", "url": "https://pubmed.ncbi.nlm.nih.gov/18288197" } ], "uniprot_canonical_ac": "Q9H6E5-1" } ], "record_id": "pubmed.18288197", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 127 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation of an active step I spliceosome and composition of its RNP core.", "journal": "Nature", "date": "2008", "authors": "Bessonov S, Anokhina M, Will CL, Urlaub H, Luhrmann R", "reference": { "type": "PubMed", "id": "18322460", "url": "https://pubmed.ncbi.nlm.nih.gov/18322460" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", 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"protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18322460", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutually exclusive interactions drive handover of mRNA from export adaptors to TAP.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008", "authors": "Hautbergue GM, Hung ML, Golovanov AP, Lian LY, Wilson SA", "reference": { "type": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JJW6-1", "protein_name": "Aly/REF export factor 2", "gene_name": "Alyref2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 24, "end_pos": 24, "sequence_org": "R", "sequence_mut": "E", "comment": "Impairs interaction with NXF1.", "evidence": [ { "database": "UniProtKB", "id": "Q9JJW6", "url": "https://www.uniprot.org/uniprotkb/Q9JJW6" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9JJW6-1" }, { "start_pos": 29, "end_pos": 29, "sequence_org": "R", "sequence_mut": "E", "comment": "Abolishes interaction with NXF1; when associated with E-30.", "evidence": [ { "database": "UniProtKB", "id": "Q9JJW6", "url": "https://www.uniprot.org/uniprotkb/Q9JJW6" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9JJW6-1" }, { "start_pos": 30, "end_pos": 30, "sequence_org": "R", "sequence_mut": "E", "comment": "Abolishes interaction with NXF1; when associated with E-29.", "evidence": [ { "database": "UniProtKB", "id": "Q9JJW6", "url": "https://www.uniprot.org/uniprotkb/Q9JJW6" }, { "database": "PubMed", "id": "18364396", "url": 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"sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-81, A-82, A-89, A-91, A-97, A-98 and A-100.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 71, "end_pos": 71, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-78, A-81, A-82, A-89, A-91, A-97, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 78, "end_pos": 78, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-81, A-82, A-89, A-91, A-97, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 81, "end_pos": 81, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-82, A-89, A-91, A-97, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 82, "end_pos": 82, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-81, A-89, A-91, A-97, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 89, "end_pos": 89, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-81, A-82, A-91, A-97, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 91, "end_pos": 91, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-81, A-82, A-89, A-97, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 97, "end_pos": 97, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-81, A-82, A-89, A-91, A-98, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 98, "end_pos": 98, "sequence_org": "R", "sequence_mut": "A", "comment": "Greatly reduces RNA binding and no effect on interaction with ALYREF/THOC4; when associated with A-71, A-78, A-81, A-82, A-89, A-91, A-97, A-100 and A-105.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "18364396", "url": "https://pubmed.ncbi.nlm.nih.gov/18364396" } ], "uniprot_canonical_ac": "Q9UBU9-1" } ], "record_id": "pubmed.18364396", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Binding of ATP to UAP56 is necessary for mRNA export.", "journal": "Journal of cell science", "date": "2008", "authors": "Kota KP, Wagner SR, Huerta E, Underwood JM, Nickerson JA", "reference": { "type": "PubMed", "id": "18411249", "url": "https://pubmed.ncbi.nlm.nih.gov/18411249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18411249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 88 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SKAR links pre-mRNA splicing to mTOR/S6K1-mediated enhanced translation efficiency of spliced mRNAs.", "journal": "Cell", "date": "2008", "authors": "Ma XM, Yoon SO, Richardson CJ, Julich K, Blenis J", "reference": { "type": "PubMed", "id": "18423201", "url": "https://pubmed.ncbi.nlm.nih.gov/18423201" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18423201", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct activities of the DExD/H-box splicing factor hUAP56 facilitate stepwise assembly of the spliceosome.", "journal": "Genes & development", "date": "2008", "authors": "Shen H, Zheng X, Shen J, Zhang L, Zhao R, Green MR", "reference": { "type": "PubMed", "id": "18593880", "url": "https://pubmed.ncbi.nlm.nih.gov/18593880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18593880", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.", "journal": "Cell", "date": "2008", "authors": "Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RK, Lemoine S, Blugeon C, Boulay J, Jensen TH, Stutz F, Devaux F, Libri D", "reference": { "type": "PubMed", "id": "18957205", "url": "https://pubmed.ncbi.nlm.nih.gov/18957205" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18957205", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spliceosomal cleavage generates the 3' end of telomerase RNA.", "journal": "Nature", "date": "2008", "authors": "Box JA, Bunch JT, Tang W, Baumann P", "reference": { "type": "PubMed", "id": "19052544", "url": "https://pubmed.ncbi.nlm.nih.gov/19052544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDW3-1", "protein_name": "Zinc finger matrin-type protein 5", "gene_name": "ZMAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15696-1", "protein_name": "U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2", "gene_name": "ZRSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV90-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 25 kDa protein", "gene_name": "SNRNP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IEG0-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 48 kDa protein", "gene_name": "SNRNP48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16560-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "gene_name": "SNRNP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8D1-1", "protein_name": "Programmed cell death protein 7", "gene_name": "PDCD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LT9-1", "protein_name": "RNA-binding region-containing protein 3", "gene_name": "RNPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBF4-1", "protein_name": "Zinc finger CCHC-type and RNA-binding motif-containing protein 1", "gene_name": "ZCRB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19052544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of post-splicing lariat-intron complexes.", "journal": "Nucleic acids research", "date": "2009", "authors": "Yoshimoto R, Kataoka N, Okawa K, Ohno M", "reference": { "type": "PubMed", "id": "19103666", "url": "https://pubmed.ncbi.nlm.nih.gov/19103666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19103666", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TFIP11 interacts with mDEAH9, an RNA helicase involved in spliceosome disassembly.", "journal": "International journal of molecular sciences", "date": "2008", "authors": "Wen X, Tannukit S, Paine ML", "reference": { "type": "PubMed", "id": "19165350", "url": "https://pubmed.ncbi.nlm.nih.gov/19165350" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ERA6-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "Tfip11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 166, "end_pos": 166, "sequence_org": "G", "sequence_mut": "A", "comment": "No effect on nuclear speckled pattern localization; when associated with A-168 and R-170.", "evidence": [ { "database": "UniProtKB", "id": "Q9ERA6", "url": "https://www.uniprot.org/uniprotkb/Q9ERA6" }, { "database": "PubMed", "id": "19165350", "url": "https://pubmed.ncbi.nlm.nih.gov/19165350" } ], "uniprot_canonical_ac": "Q9ERA6-1" }, { "start_pos": 168, "end_pos": 168, "sequence_org": "G", "sequence_mut": "A", "comment": "No effect on nuclear speckled pattern localization; when associated with A-166 and R-170.", "evidence": [ { "database": "UniProtKB", "id": "Q9ERA6", "url": "https://www.uniprot.org/uniprotkb/Q9ERA6" }, { "database": "PubMed", "id": "19165350", "url": "https://pubmed.ncbi.nlm.nih.gov/19165350" } ], "uniprot_canonical_ac": "Q9ERA6-1" }, { "start_pos": 170, "end_pos": 170, "sequence_org": "G", "sequence_mut": "R", "comment": "No effect on nuclear speckled pattern localization; when associated with A-166 and A-168.", "evidence": [ { "database": "UniProtKB", "id": "Q9ERA6", "url": "https://www.uniprot.org/uniprotkb/Q9ERA6" }, { "database": "PubMed", "id": "19165350", "url": "https://pubmed.ncbi.nlm.nih.gov/19165350" } ], "uniprot_canonical_ac": "Q9ERA6-1" } ], "record_id": "pubmed.19165350", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 205 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular architecture of the human pre-mRNA 3' processing complex.", "journal": "Molecular cell", "date": "2009-02-13", "authors": "Shi Yongsheng, Di Giammartino Dafne Campigli, Taylor Derek, Sarkeshik Ali, Rice William J, Yates John R, Frank Joachim, Manley James L", "reference": { "type": "PubMed", "id": "19217410", "url": "https://pubmed.ncbi.nlm.nih.gov/19217410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19217410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exon, intron and splice site locations in the spliceosomal B complex.", "journal": "The EMBO journal", "date": "2009", "authors": "Wolf E, Kastner B, Deckert J, Merz C, Stark H, Luhrmann R", "reference": { "type": "PubMed", "id": "19536130", "url": "https://pubmed.ncbi.nlm.nih.gov/19536130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19536130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "UIF, a New mRNA export adaptor that works together with REF/ALY, requires FACT for recruitment to mRNA.", "journal": "Current biology : CB", "date": "2009", "authors": "Hautbergue GM, Hung ML, Walsh MJ, Snijders AP, Chang CT, Jones R, Ponting CP, Dickman MJ, Wilson SA", "reference": { "type": "PubMed", "id": "19836239", "url": "https://pubmed.ncbi.nlm.nih.gov/19836239" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ZJ20-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08945-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "SSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19836239", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arginine methylation of REF/ALY promotes efficient handover of mRNA to TAP/NXF1.", "journal": "Nucleic acids research", "date": "2010", "authors": "Hung ML, Hautbergue GM, Snijders AP, Dickman MJ, Wilson SA", "reference": { "type": "PubMed", "id": "20129943", "url": "https://pubmed.ncbi.nlm.nih.gov/20129943" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14493-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "SLBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JJW6-1", "protein_name": "Aly/REF export factor 2", "gene_name": "Alyref2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20129943", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 74 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Contribution of DEAH-box protein DHX16 in human pre-mRNA splicing.", "journal": "The Biochemical journal", "date": "2010", "authors": "Gencheva M, Kato M, Newo AN, Lin RJ", "reference": { "type": "PubMed", "id": "20423332", "url": "https://pubmed.ncbi.nlm.nih.gov/20423332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": 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"protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 428, "end_pos": 428, "sequence_org": "K", "sequence_mut": "A", "comment": "Impairs pre-mRNA splicing activity.", "evidence": [ { "database": "UniProtKB", "id": "O60231", "url": "https://www.uniprot.org/uniprotkb/O60231" }, { "database": "PubMed", "id": "20423332", "url": "https://pubmed.ncbi.nlm.nih.gov/20423332" } ], "uniprot_canonical_ac": "O60231-1" }, { "start_pos": 520, "end_pos": 520, "sequence_org": "D", "sequence_mut": "A", "comment": 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Impairs pre-mRNA splicing activity. Fails to interact with any of viral RNA forms.", "evidence": [ { "database": "UniProtKB", "id": "O60231", "url": "https://www.uniprot.org/uniprotkb/O60231" }, { "database": "PubMed", "id": "35263596", "url": "https://pubmed.ncbi.nlm.nih.gov/35263596" }, { "database": "PubMed", "id": "25296192", "url": "https://pubmed.ncbi.nlm.nih.gov/25296192" }, { "database": "PubMed", "id": "20423332", "url": "https://pubmed.ncbi.nlm.nih.gov/20423332" } ], "uniprot_canonical_ac": "O60231-1" }, { "start_pos": 724, "end_pos": 724, "sequence_org": "G", "sequence_mut": "N", "comment": "Dominant-negative mutant. Impairs pre-mRNA splicing activity. Fails to interact with any of viral RNA forms.", "evidence": [ { "database": "UniProtKB", "id": "O60231", "url": "https://www.uniprot.org/uniprotkb/O60231" }, { "database": "PubMed", "id": "35263596", "url": "https://pubmed.ncbi.nlm.nih.gov/35263596" }, { "database": "PubMed", "id": "25296192", "url": "https://pubmed.ncbi.nlm.nih.gov/25296192" }, { "database": "PubMed", "id": "20841358", "url": "https://pubmed.ncbi.nlm.nih.gov/20841358" }, { "database": "PubMed", "id": "20423332", "url": "https://pubmed.ncbi.nlm.nih.gov/20423332" } ], "uniprot_canonical_ac": "O60231-1" } ], "record_id": "pubmed.20423332", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The closely related RNA helicases, UAP56 and URH49, preferentially form distinct mRNA export machineries and coordinately regulate mitotic progression.", "journal": "Molecular biology of the cell", "date": "2010", "authors": "Yamazaki T, Fujiwara N, Yukinaga H, Ebisuya M, Shiki T, Kurihara T, Kioka N, Kambe T, Nagao M, Nishida E, Masuda S", "reference": { "type": "PubMed", "id": "20573985", "url": "https://pubmed.ncbi.nlm.nih.gov/20573985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { 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"uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20573985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence that cleavage factor Im is a heterotetrameric protein complex controlling alternative polyadenylation.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2010", "authors": "Kim S, Yamamoto J, Chen Y, Aida M, Wada T, Handa H, Yamaguchi Y", "reference": { "type": "PubMed", "id": "20695905", "url": "https://pubmed.ncbi.nlm.nih.gov/20695905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16630-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 6", "gene_name": "CPSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20695905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 127 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex.", "journal": "Genes & development", "date": "2010", "authors": "Dufu K, Livingstone MJ, Seebacher J, Gygi SP, Wilson SA, Reed R", "reference": { "type": "PubMed", "id": "20844015", "url": "https://pubmed.ncbi.nlm.nih.gov/20844015" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20844015", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of purified human Bact spliceosomal complexes reveals compositional and morphological changes during spliceosome activation and first step catalysis.", "journal": "RNA (New York, N.Y.)", "date": "2010", "authors": "Bessonov S, Anokhina M, Krasauskas A, Golas MM, Sander B, Will CL, Urlaub H, Stark H, Luhrmann R", "reference": { "type": "PubMed", "id": "20980672", "url": "https://pubmed.ncbi.nlm.nih.gov/20980672" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20980672", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping.", "journal": "Structure (London, England : 1993)", "date": "2011", "authors": "Yang Q, Coseno M, Gilmartin GM, Doublie S", "reference": { "type": "PubMed", "id": "21295486", "url": "https://pubmed.ncbi.nlm.nih.gov/21295486" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": 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"uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21536652", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for base-pairing between mammalian U2 and U6 small nuclear ribonucleoprotein particles.", "journal": "Genes & development", "date": "1990", "authors": "Hausner TP, Giglio LM, Weiner AM", "reference": { "type": "PubMed", "id": "2176635", "url": "https://pubmed.ncbi.nlm.nih.gov/2176635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear 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ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2176635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The export factor Yra1 modulates mRNA 3' end processing.", "journal": "Nature structural & molecular biology", "date": "2011", "authors": "Johnson SA, Kim H, Erickson B, Bentley DL", "reference": { "type": "PubMed", "id": "21947206", "url": "https://pubmed.ncbi.nlm.nih.gov/21947206" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21947206", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional mammalian spliceosomal complex E contains SMN complex proteins in addition to U1 and U2 snRNPs.", "journal": "Nucleic acids research", "date": "2012", "authors": "Makarov EM, Owen N, Bottrill A, Makarova OV", "reference": { "type": "PubMed", "id": "22110043", "url": "https://pubmed.ncbi.nlm.nih.gov/22110043" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22110043", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "New clues to understand the role of THO and other functionally related factors in mRNP biogenesis.", "journal": "Biochimica et biophysica acta", "date": "2012", "authors": "Luna R, Rondon AG, Aguilera A", "reference": { "type": "PubMed", "id": "22207203", "url": "https://pubmed.ncbi.nlm.nih.gov/22207203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22207203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic protein-protein interaction wiring of the human spliceosome.", "journal": "Molecular cell", "date": "2012", "authors": "Hegele A, Kamburov A, Grossmann A, Sourlis C, Wowro S, Weimann M, Will CL, Pena V, Luhrmann R, Stelzl U", "reference": { "type": "PubMed", "id": "22365833", "url": "https://pubmed.ncbi.nlm.nih.gov/22365833" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": 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factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22365833", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual-specificity tyrosine phosphorylation-regulated kinase 1A (Dyrk1A) modulates serine/arginine-rich protein 55 (SRp55)-promoted Tau exon 10 inclusion.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Yin X, Jin N, Gu J, Shi J, Zhou J, Gong CX, Iqbal K, Grundke-Iqbal I, Liu F", "reference": { "type": "PubMed", "id": "22767602", "url": 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"evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" }, { "database": "PubMed", "id": "22767602", "url": "https://pubmed.ncbi.nlm.nih.gov/22767602" } ], "uniprot_canonical_ac": "Q13247-1" }, { "start_pos": 303, "end_pos": 303, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes regulatory effect of DYRK1A on alternative splicing of MAPT/Tau exon 10.", "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" }, { "database": "PubMed", "id": "22767602", "url": "https://pubmed.ncbi.nlm.nih.gov/22767602" } ], "uniprot_canonical_ac": "Q13247-1" }, { "start_pos": 316, "end_pos": 316, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on regulation of alternative splicing of MAPT/Tau exon 10 by DYRK1A.", "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" }, { "database": "PubMed", "id": "22767602", "url": 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"gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22813749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export.", "journal": "Nature communications", "date": "2012", "authors": "Viphakone N, Hautbergue GM, Walsh M, Chang CT, Holland A, Folco EG, Reed R, Wilson SA", "reference": { "type": "PubMed", "id": "22893130", "url": "https://pubmed.ncbi.nlm.nih.gov/22893130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 453, "end_pos": 453, "sequence_org": "R", "sequence_mut": "A", "comment": "Impairs intramolecular interaction between RBD and NTF2.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "22893130", "url": "https://pubmed.ncbi.nlm.nih.gov/22893130" } ], "uniprot_canonical_ac": "Q9UBU9-1" }, { "start_pos": 456, "end_pos": 459, "sequence_org": "KHTR", "sequence_mut": "AAAA", "comment": "Abolishes interaction with THOC5 and CHTOP, no effect on interaction with NXT1; enhances intramolecular interaction between RBD and NTF2, reduces RNA binding and mRNA export.", "evidence": [ { "database": "UniProtKB", "id": "Q9UBU9", "url": "https://www.uniprot.org/uniprotkb/Q9UBU9" }, { "database": "PubMed", "id": "23299939", "url": "https://pubmed.ncbi.nlm.nih.gov/23299939" }, { "database": "PubMed", "id": "22893130", "url": "https://pubmed.ncbi.nlm.nih.gov/22893130" } ], "uniprot_canonical_ac": "Q9UBU9-1" } ], "record_id": "pubmed.22893130", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The proteins PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export.", "journal": "PloS one", "date": "2012", "authors": "Folco EG, Lee CS, Dufu K, Yamazaki T, Reed R", "reference": { "type": "PubMed", "id": "22928037", "url": "https://pubmed.ncbi.nlm.nih.gov/22928037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22928037", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CWC22 connects pre-mRNA splicing and exon junction complex assembly.", "journal": "Cell reports", "date": "2012", "authors": "Steckelberg AL, Boehm V, Gromadzka AM, Gehring NH", "reference": { "type": "PubMed", "id": "22959432", "url": "https://pubmed.ncbi.nlm.nih.gov/22959432" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 270, "end_pos": 270, "sequence_org": "D", "sequence_mut": "K", "comment": "Loss of CWC22-binding and loss of incorporation into EJCs; when associated with K-273.", "evidence": [ { "database": "UniProtKB", "id": "P38919", "url": "https://www.uniprot.org/uniprotkb/P38919" }, { "database": "PubMed", "id": "22959432", "url": "https://pubmed.ncbi.nlm.nih.gov/22959432" } ], "uniprot_canonical_ac": "P38919-1" }, { "start_pos": 273, "end_pos": 273, "sequence_org": "D", "sequence_mut": "K", "comment": "Loss of CWC22-binding and loss of incorporation into EJCs; when associated with K-270.", "evidence": [ { "database": "UniProtKB", "id": "P38919", "url": "https://www.uniprot.org/uniprotkb/P38919" }, { "database": "PubMed", "id": "22959432", "url": "https://pubmed.ncbi.nlm.nih.gov/22959432" } ], "uniprot_canonical_ac": "P38919-1" }, { "start_pos": 276, "end_pos": 277, "sequence_org": "TI", "sequence_mut": "GD", "comment": "Loss of CWC22-binding and loss of incorporation into EJCs.", "evidence": [ { "database": "UniProtKB", "id": "P38919", "url": "https://www.uniprot.org/uniprotkb/P38919" }, { "database": "PubMed", "id": "22959432", "url": "https://pubmed.ncbi.nlm.nih.gov/22959432" } ], "uniprot_canonical_ac": "P38919-1" }, { "start_pos": 301, "end_pos": 303, "sequence_org": "NFT", "sequence_mut": "LAG", "comment": "Loss of CWC22-binding and loss of incorporation into EJCs.", "evidence": [ { "database": "UniProtKB", "id": "P38919", "url": "https://www.uniprot.org/uniprotkb/P38919" }, { "database": "PubMed", "id": "22959432", "url": "https://pubmed.ncbi.nlm.nih.gov/22959432" } ], "uniprot_canonical_ac": "P38919-1" }, { "start_pos": 171, "end_pos": 172, "sequence_org": "NK", "sequence_mut": "DE", "comment": "Loss of EIF4A3-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9HCG8", "url": "https://www.uniprot.org/uniprotkb/Q9HCG8" }, { "database": "PubMed", "id": "22959432", "url": "https://pubmed.ncbi.nlm.nih.gov/22959432" } ], "uniprot_canonical_ac": "Q9HCG8-1" } ], "record_id": "pubmed.22959432", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly.", "journal": "Nature structural & molecular biology", "date": "2012", "authors": "Barbosa I, Haque N, Fiorini F, Barrandon C, Tomasetto C, Blanchette M, Le Hir H", "reference": { "type": "PubMed", "id": "22961380", "url": "https://pubmed.ncbi.nlm.nih.gov/22961380" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VHS8-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "CG7483", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VJ87-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "ncm", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 401, "end_pos": 401, "sequence_org": "D", "sequence_mut": "K", "comment": "Loss of incorporation into EJCs; when associated with R-402.", "evidence": [ { "database": "UniProtKB", "id": "P38919", "url": "https://www.uniprot.org/uniprotkb/P38919" }, { "database": "PubMed", "id": "22961380", "url": "https://pubmed.ncbi.nlm.nih.gov/22961380" } ], "uniprot_canonical_ac": "P38919-1" }, { "start_pos": 402, "end_pos": 402, "sequence_org": "E", "sequence_mut": "R", "comment": "Loss of incorporation into EJCs; when associated with K-401.", "evidence": [ { "database": "UniProtKB", "id": "P38919", "url": "https://www.uniprot.org/uniprotkb/P38919" }, { "database": "PubMed", "id": "22961380", "url": "https://pubmed.ncbi.nlm.nih.gov/22961380" } ], "uniprot_canonical_ac": "P38919-1" } ], "record_id": "pubmed.22961380", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 206 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aly and THO are required for assembly of the human TREX complex and association of TREX components with the spliced mRNA.", "journal": "Nucleic acids research", "date": "2013", "authors": "Chi B, Wang Q, Wu G, Tan M, Wang L, Shi M, Chang X, Cheng H", "reference": { "type": "PubMed", "id": "23222130", "url": "https://pubmed.ncbi.nlm.nih.gov/23222130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B 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"LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23222130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 234 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012", "authors": "Alexandrov A, Colognori D, Shu MD, Steitz JA", "reference": { "type": "PubMed", "id": "23236153", "url": "https://pubmed.ncbi.nlm.nih.gov/23236153" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 334, "end_pos": 334, "sequence_org": "T", "sequence_mut": "V", "comment": "Reduced incorporation into EJCs.", "evidence": [ { "database": "UniProtKB", 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"end_pos": 334, "sequence_org": "Y", "sequence_mut": "A", "comment": "Decreased EIF4A3-binding; when associated with A-331.", "evidence": [ { "database": "UniProtKB", "id": "Q9HCG8", "url": "https://www.uniprot.org/uniprotkb/Q9HCG8" }, { "database": "PubMed", "id": "23236153", "url": "https://pubmed.ncbi.nlm.nih.gov/23236153" } ], "uniprot_canonical_ac": "Q9HCG8-1" } ], "record_id": "pubmed.23236153", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rearrangements within human spliceosomes captured after exon ligation.", "journal": "RNA (New York, N.Y.)", "date": "2013", "authors": "Ilagan JO, Chalkley RJ, Burlingame AL, Jurica MS", "reference": { "type": "PubMed", "id": "23345524", "url": "https://pubmed.ncbi.nlm.nih.gov/23345524" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23345524", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping interactions between mRNA export factors in living cells.", "journal": "PloS one", "date": "2013", "authors": "Teng IF, Wilson SA", "reference": { "type": "PubMed", "id": "23826332", "url": "https://pubmed.ncbi.nlm.nih.gov/23826332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY0-1", "protein_name": "Nuclear RNA export factor 2", "gene_name": "NXF2B; NXF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23826332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The conserved intronic cleavage and polyadenylation site of CstF-77 gene imparts control of 3' end processing activity through feedback autoregulation and by U1 snRNP.", "journal": "PLoS genetics", "date": "2013", "authors": "Luo W, Ji Z, Pan Z, You B, Hoque M, Li W, Gunderson SI, Tian B", "reference": { "type": "PubMed", "id": "23874216", "url": "https://pubmed.ncbi.nlm.nih.gov/23874216" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23874216", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of human poly(A) polymerase gamma reveals a conserved catalytic core for canonical poly(A) polymerases.", "journal": "Journal of molecular biology", "date": "2014", "authors": "Yang Q, Nausch LW, Martin G, Keller W, Doublie S", "reference": { "type": "PubMed", "id": "24076191", "url": "https://pubmed.ncbi.nlm.nih.gov/24076191" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24076191", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overlapping and distinct functions of CstF64 and CstF64tau in mammalian mRNA 3' processing.", "journal": "RNA (New York, N.Y.)", "date": "2013", "authors": "Yao C, Choi EA, Weng L, Xie X, Wan J, Xing Y, Moresco JJ, Tu PG, Yates JR 3rd, Shi Y", "reference": { "type": "PubMed", "id": "24149845", "url": "https://pubmed.ncbi.nlm.nih.gov/24149845" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24149845", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA catalyses nuclear pre-mRNA splicing.", "journal": "Nature", "date": "2013", "authors": "Fica SM, Tuttle N, Novak T, Li NS, Lu J, Koodathingal P, Dai Q, Staley JP, Piccirilli JA", "reference": { "type": "PubMed", "id": "24196718", "url": "https://pubmed.ncbi.nlm.nih.gov/24196718" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24196718", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II.", "journal": "PLoS genetics", "date": "2013", "authors": "Meinel DM, Burkert-Kautzsch C, Kieser A, O'Duibhir E, Siebert M, Mayer A, Cramer P, Soding J, Holstege FC, Strasser K", "reference": { "type": "PubMed", "id": "24244187", "url": "https://pubmed.ncbi.nlm.nih.gov/24244187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P127-1", "protein_name": "Leucine zipper protein 4", "gene_name": "LUZP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3Y2-1", "protein_name": "Chromatin target of PRMT1 protein", "gene_name": "CHTOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75152-1", "protein_name": "Zinc finger CCCH domain-containing protein 11A", "gene_name": "ZC3H11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00148-1", "protein_name": "ATP-dependent RNA helicase DDX39A", "gene_name": "DDX39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD9-1", "protein_name": "UAP56-interacting factor", "gene_name": "FYTTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24244187", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel component C2ORF3 in the lariat-intron complex: lack of C2ORF3 interferes with pre-mRNA splicing via intron turnover pathway.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014", "authors": "Yoshimoto R, Okawa K, Yoshida M, Ohno M, Kataoka N", "reference": { "type": "PubMed", "id": "24304693", "url": "https://pubmed.ncbi.nlm.nih.gov/24304693" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24304693", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.", "journal": "Nature chemical biology", "date": "2014", "authors": "Liu J, Yue Y, Han D, Wang X, Fu Y, Zhang L, Jia G, Yu M, Lu Z, Deng X, Dai Q, Chen W, He C", "reference": { "type": "PubMed", "id": "24316715", "url": "https://pubmed.ncbi.nlm.nih.gov/24316715" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15007-1", "protein_name": "Pre-mRNA-splicing regulator WTAP", "gene_name": "WTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE5-1", "protein_name": "N(6)-adenosine-methyltransferase non-catalytic subunit METTL14", "gene_name": "METTL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U44-1", "protein_name": "N(6)-adenosine-methyltransferase catalytic subunit METTL3", "gene_name": "METTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24316715", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 52 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase.", "journal": "Cell research", "date": "2014", "authors": "Ping XL, Sun BF, Wang L, Xiao W, Yang X, Wang WJ, Adhikari S, Shi Y, Lv Y, Chen YS, Zhao X, Li A, Yang Y, Dahal U, Lou XM, Liu X, Huang J, Yuan WP, Zhu XF, Cheng T, Zhao YL, Wang X, Rendtlew Danielsen JM, Liu F, Yang YG", "reference": { "type": "PubMed", "id": "24407421", "url": "https://pubmed.ncbi.nlm.nih.gov/24407421" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7SXL7-1", "protein_name": "Pre-mRNA-splicing regulator WTAP", "gene_name": "wtap", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q15007-1", "protein_name": "Pre-mRNA-splicing regulator WTAP", "gene_name": "WTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE5-1", "protein_name": "N(6)-adenosine-methyltransferase non-catalytic subunit METTL14", "gene_name": "METTL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "F1R777-1", "protein_name": "N(6)-adenosine-methyltransferase subunit METTL3", "gene_name": "mettl3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86U44-1", "protein_name": "N(6)-adenosine-methyltransferase catalytic subunit METTL3", "gene_name": "METTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24407421", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mass spectrometry-based relative quantification of proteins in precatalytic and catalytically active spliceosomes by metabolic labeling (SILAC), chemical labeling (iTRAQ), and label-free spectral count.", "journal": "RNA (New York, N.Y.)", "date": "2014", "authors": "Schmidt C, Gronborg M, Deckert J, Bessonov S, Conrad T, Luhrmann R, Urlaub H", "reference": { "type": "PubMed", "id": "24448447", "url": "https://pubmed.ncbi.nlm.nih.gov/24448447" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24448447", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A missense mutation in the splicing factor gene DHX38 is associated with early-onset retinitis pigmentosa with macular coloboma.", "journal": "Journal of medical genetics", "date": "2014", "authors": "Ajmal M, Khan MI, Neveling K, Khan YM, Azam M, Waheed NK, Hamel CP, Ben-Yosef T, De Baere E, Koenekoop RK, Collin RW, Qamar R, Cremers FP", "reference": { "type": "PubMed", "id": "24737827", "url": "https://pubmed.ncbi.nlm.nih.gov/24737827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24737827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28.", "journal": "Acta crystallographica. Section D, Biological crystallography", "date": "2014", "authors": "Mohlmann S, Mathew R, Neumann P, Schmitt A, Luhrmann R, Ficner R", "reference": { "type": "PubMed", "id": "24914973", "url": "https://pubmed.ncbi.nlm.nih.gov/24914973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24914973", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites.", "journal": "Cell reports", "date": "2014", "authors": "Schwartz S, Mumbach MR, Jovanovic M, Wang T, Maciag K, Bushkin GG, Mertins P, Ter-Ovanesyan D, Habib N, Cacchiarelli D, Sanjana NE, Freinkman E, Pacold ME, Satija R, Mikkelsen TS, Hacohen N, Zhang F, Carr SA, Lander ES, Regev A", "reference": { "type": "PubMed", "id": "24981863", "url": "https://pubmed.ncbi.nlm.nih.gov/24981863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15007-1", "protein_name": "Pre-mRNA-splicing regulator WTAP", "gene_name": "WTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE5-1", "protein_name": "N(6)-adenosine-methyltransferase non-catalytic subunit METTL14", "gene_name": "METTL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U44-1", "protein_name": "N(6)-adenosine-methyltransferase catalytic subunit METTL3", "gene_name": "METTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q69YN4-1", "protein_name": "Protein virilizer homolog", "gene_name": "VIRMA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24981863", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 53 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vitro reconstitution of snRNPs: a reconstituted U4/U6 snRNP participates in splicing complex formation.", "journal": "Genes & development", "date": "1989", "authors": "Pikielny CW, Bindereif A, Green MR", "reference": { "type": "PubMed", "id": "2524422", "url": "https://pubmed.ncbi.nlm.nih.gov/2524422" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDW3-1", "protein_name": "Zinc finger matrin-type protein 5", "gene_name": "ZMAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15696-1", "protein_name": "U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2", "gene_name": "ZRSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV90-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 25 kDa protein", "gene_name": "SNRNP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IEG0-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 48 kDa protein", "gene_name": "SNRNP48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16560-1", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "gene_name": "SNRNP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8D1-1", "protein_name": "Programmed cell death protein 7", "gene_name": "PDCD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LT9-1", "protein_name": "RNA-binding region-containing protein 3", "gene_name": "RNPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBF4-1", "protein_name": "Zinc finger CCHC-type and RNA-binding motif-containing protein 1", "gene_name": "ZCRB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2524422", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing.", "journal": "Genes & development", "date": "2014", "authors": "Chan SL, Huppertz I, Yao C, Weng L, Moresco JJ, Yates JR 3rd, Ule J, Manley JL, Shi Y", "reference": { "type": "PubMed", "id": "25301780", "url": "https://pubmed.ncbi.nlm.nih.gov/25301780" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25301780", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.", "journal": "Genes & development", "date": "2014", "authors": "Schonemann L, Kuhn U, Martin G, Schafer P, Gruber AR, Keller W, Zavolan M, Wahle E", "reference": { "type": "PubMed", "id": "25301781", "url": "https://pubmed.ncbi.nlm.nih.gov/25301781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6E5-1", "protein_name": "Speckle targeted PIP5K1A-regulated poly(A) polymerase", "gene_name": "TUT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QC0-1", "protein_name": "Serine/threonine-protein phosphatase 1 regulatory subunit 10", "gene_name": "PPP1R10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWT3-1", "protein_name": "Poly(A) polymerase gamma", "gene_name": "PAPOLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6E9-1", "protein_name": "E3 ubiquitin-protein ligase RBBP6", "gene_name": "RBBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25301781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 126 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.", "journal": "eLife", "date": "2015", "authors": "Kondo Y, Oubridge C, van Roon AM, Nagai K", "reference": { "type": "PubMed", "id": "25555158", "url": "https://pubmed.ncbi.nlm.nih.gov/25555158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49756-1", "protein_name": "RNA-binding protein 25", "gene_name": "RBM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12972-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "PPP1R8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NC0-1", "protein_name": "Zinc finger matrin-type protein 2", "gene_name": "ZMAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13523-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14498-1", "protein_name": "RNA-binding protein 39", "gene_name": "RBM39", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0G5-1", "protein_name": "Nuclear speckle splicing regulatory protein 1", "gene_name": "NSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08621-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "SNRNP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09234-1", "protein_name": "U1 small nuclear ribonucleoprotein C", "gene_name": "SNRPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NAV1-1", "protein_name": "Pre-mRNA-splicing factor 38A", "gene_name": "PRPF38A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAD8-1", "protein_name": "Smad nuclear-interacting protein 1", "gene_name": "SNIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99633-1", "protein_name": "Pre-mRNA-splicing factor 18", "gene_name": "PRPF18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43395-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp3", "gene_name": "PRPF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H875-1", "protein_name": "PRKR-interacting protein 1", "gene_name": "PRKRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16383-1", "protein_name": "Intron Large complex component GCFC2", "gene_name": "GCFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRR8-1", "protein_name": "G patch domain-containing protein 1", "gene_name": "GPATCH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTD8-1", "protein_name": "RNA-binding protein 42", "gene_name": "RBM42", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15541-1", "protein_name": "E3 ubiquitin-protein ligase RNF113A", "gene_name": "RNF113A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ49-1", "protein_name": "Splicing regulator SDE2", "gene_name": "SDE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL1-1", "protein_name": "Ubiquitin-like protein 5", "gene_name": "UBL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13123-1", "protein_name": "Protein Red", "gene_name": "IK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13427-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase G", "gene_name": "PPIG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TBE0-1", "protein_name": "CWF19-like protein 2", "gene_name": "CWF19L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14562-1", "protein_name": "ATP-dependent RNA helicase DHX8", "gene_name": "DHX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUD4-1", "protein_name": "Coiled-coil domain-containing protein 12", "gene_name": "CCDC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVK2-1", "protein_name": "U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein", "gene_name": "SNRNP27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW85-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUQ7-1", "protein_name": "Splicing factor Cactin", "gene_name": "CACTIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09012-1", "protein_name": "U1 small nuclear ribonucleoprotein A", "gene_name": "SNRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5Z1-1", "protein_name": "Probable ATP-dependent RNA helicase DHX35", "gene_name": "DHX35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95777-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm8", "gene_name": "LSM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13356-1", "protein_name": "RING-type E3 ubiquitin-protein ligase PPIL2", "gene_name": "PPIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 39", "gene_name": "USP39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXF0-1", "protein_name": "Serine/arginine-rich splicing factor 12", "gene_name": "SRSF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43290-1", "protein_name": "U4/U6.U5 tri-snRNP-associated protein 1", "gene_name": "SART1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV3-1", "protein_name": "Apoptotic chromatin condensation inducer in the nucleus", "gene_name": "ACIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55081-1", "protein_name": "Microfibrillar-associated protein 1", "gene_name": "MFAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95391-1", "protein_name": "Pre-mRNA-splicing factor SLU7", "gene_name": "SLU7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98175-1", "protein_name": "RNA-binding protein 10", "gene_name": "RBM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y421-1", "protein_name": "Protein FAM32A", "gene_name": "FAM32A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14776-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "TCERG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5F7-1", "protein_name": "NF-kappa-B-activating protein", "gene_name": "NKAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H307-1", "protein_name": "Pinin", "gene_name": "PNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00422-1", "protein_name": "Histone deacetylase complex subunit SAP18", "gene_name": "SAP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75554-1", "protein_name": "WW domain-binding protein 4", "gene_name": "WBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75494-1", "protein_name": "Serine/arginine-rich splicing factor 10", "gene_name": "SRSF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y388-1", "protein_name": "RNA-binding motif protein, X-linked 2", "gene_name": "RBMX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRD0-1", "protein_name": "BUD13 homolog", "gene_name": "BUD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95232-1", "protein_name": "Luc7-like protein 3", "gene_name": "LUC7L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43447-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase H", "gene_name": "PPIH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ63-1", "protein_name": "Splicing factor C9orf78", "gene_name": "C9orf78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW82-1", "protein_name": "WD repeat-containing protein 70", "gene_name": "WDR70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15637-1", "protein_name": "Splicing factor 1", "gene_name": "SF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBB9-1", "protein_name": "Tuftelin-interacting protein 11", "gene_name": "TFIP11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13247", "url": "https://www.uniprot.org/uniprotkb/Q13247" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25555158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 204 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]